Lsi03G009050.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGTAAAAAGAATTTAAGGATAATGTTTAATGTAGTAGTAAACATGAAAGGAGGCGGTAAAGTTGGAATGAGAATGGGCGATGAAAGTGGAGGAAGGAAATAGTCAACGCAATTGACCAACTCCAAATCCATTTCACTTTCTTCTCCGTTTTATTCTCCACTTCTTATGCTTTATTCAACTTTTTTTTCTTCCCACTTTTTCCCAAAATCTTTCTTTAATTCCCTTTTCCCCCATCCACATACGCCTCTTCAAATTCCCCCCCCCCTCCCCCCCCATCTTTCAATATTAACCCTAACAGTTATTCTAAAAATCTTATTCCAAAATTATTAAATTATTTTCATTCCATTTTATTTTTTACAACAGAAAATAAAACCCAGCTTCTACCAACTTCAAAATACAAATGTTTAGTACTTTTAGATAATTACATTTGTTTTTATGAAAAGTTTTAAAAGTCGTCAAAGAATATTTGGATAGTCACGTTTGTTTTGTACAATTTTTTAATGAAATTATCTTTAAATATTGTATTATTTTAACAATATCGTTCTATTTTTCAGTTAATTTATATATTAATTTCAAATAATTACATTTAAATGACATTTTAGTGACTTTAATAAGTTAATATTTTATTTTTATGAATTCTATTTATATTAATTTTATATATATTCTTTTAAAACAAGATAACTTATAATATTTTGAAATTTTTATAAAAAAATCACATTAAATATTAACTTTGATTTAGATTTGAAATGGTTAGACAAATTATATGGTTGATAGTATTTGTTTTAATCGATCATTCTTATTTAAATTGAGAAATTTTTTAAAGAAAGGATAGTAATTTGTGATTTTTTTTAAAATATTAAACAATCACTATTGAAAATGTATAAATAAAATTGAAAAGTTCTCAATGGAAAATAAATTGAGCTATATATTATACAATTTAAATATAATACTTCCATATATGTAAATGAAAACAAAAACATAGCTTATTGCTTAGAGTTATTTATTTACAGGAGGAATATATGGTTAATAATTATAAAATAAAAATAAAGAAGAGTGATATATAGCACACACAAACACACACAAAAAAATAAAAAAATAAAAAAAGAAGAAGGACAAATTAAAAAATAAAACGAAGATGCCCTCAACATGAAAAAATCTCGAAAATCTATGTTTTAAGAAGACATCCAAACCTCTTGAAATTCTCTTTTTATAAAGGAATCTAAGGATGTCCAAGTATTTTGAGATACTTGATGATTGTACATTATCACACAACAAATGGGCTTATCCAAATTTTCACAAAACAAACGACCCATTAAAATATAAAACATTGTAACTTAAAATTGTTGTCAACTTTAGTTAATATAATCGTCATCTATCGGTTGTTATTAATATTAGTAAAACATCAAAATCTAATTGTGTCCAATTTCTCTAATTTTTTTGCTTATATATTTTGCAATTATCGTTTTTATATGAAAAAAAACAATTAAGGCAACTACTGTGAATCACAAATCCTAATTAACAATATCCAAATTGACTTACTAATTTAGCAATTAGAAATTGTGGTCGGTATTAAACCTTCTTCAAGTGAAATTCTCTTGTTTTTTCTTTAAAAAAAAAATAGAATTTATCATTTGAGGGTTTATTGGTAAATTCACCTCACATGCATATTCATGATACACAAAAAGTGTAGGTCCCTTTTTAACGTAATAATTGGGAATTAATTTGTTTATCAAAATTGAGTGCTTTCTTCTCCATAATATATAAAGCCTTCAAACCCATTCAACTCATCCATATCCTCAACTACTTCAAACTCTTTTCTTCATACAAATCTCTCCCTATTCTAAAACACTTTATTTGCAAAAAATGGCTCTTCATACAAAATCATTTATTCTCTTGCTATTACTATTATCCATTATGTTCTTCAATTTAACTGCCTTTGCTGCTCCGTTAACATTCAACATTGTCGATTTTGGAGCCAAACCCGACAACGCCAAAATCGACTCATCAAAGGCCTTTCAATTGGCATGGATGCGTGCTTGTAGCTCTTCTAGACCAGCATCCATTTATGTGCCTAAGGCCAAATTCTACGTTCACAGTGCAACTTTTAATGGACCATGCAATAATAATGGCATTACTATACGTATTGATGGTACTCTCGTGGCTCCCTCAGACTTCCATCTCACTAGCAACTCTGAAGATTGGATCATTTTTCACAATGTTAATGGAGTTACTGTCTTGGGTGGTGTTATTGATGGCCAAGGATCTAGGCTTTGGGCTTGCAAAAAATCTGGCAAGACCTGTCCTCGTGGAACCACAGTATACGAACTTTACTAACCTGCATCTCGCATCTATATTTGTACAACTCACCTAATATTCCAATCACAATTTTTTACCTGATAAAGTTCTTTTTCTTTTTCTTTTATAATATTTTGAACTTTTTTCTACATAGTTGACATTTATTTTTAATTTTTTTTAAAATTTTTTTCTATATAGTTGGCAAAAATTACATAAAGATTGGTGCAATCATATTACTCCTATTTAAATTATGAGAAATAAAAATTTATCACATGATAATTCTAGTCGGCAACTAAATAGGTGCACCATATGCACATTATAGTATCACGTACAATAAATTAATTTATCTTTTACGTATAATAATATGATTAATATATATATATATGATTAAATAAATAGAAAATAAAGGATACCATTTTAAAAATTAAAATTATTATATGTTGTTTATTATTGTCACTTAGGTATAATTTTCAATTCACTTTCTAATATAAAAAGAACTATTTGTGCTTTGTGCAGTCACTGAAATTTACTAATTCCCAAAATATATTGGTTAGTGGATTAAGTTCACTAAATAGCCAAATATTCACATAGTAGTAAACGAGTGTCATAATGTAAAAATACAAGGACTAAAAGTCTCGGTCTCTAGCGATAGTCCAAACACCGATGGAATTCATGTAGGCAAATCATCTCATGTCACCATCCTCAACTCCAATATCGGCACTGGTGATGACTGCATCTCAATAGGCTCTGGCACCTCCAACTTATGGATAGAGAATATTGTTTGTGGACCTAGTCATGGAATTAGGTACGTAGACACTTGATAATTTTTTATCAATTATTTGGGGTTTCTTTTATGGATTATTCTGATTTTATTTGATTTTATTTGGTTGGTGTAGCATTGGAAGTTTAGGAAGAAAGTTCAAGGAGGACGGCGTTGAGAATGTGACAGTAAAATCATGTAGATTTATGAACACTCAAAATGGGGTGAGAATAAAAAGTTGGGAAAGGCCAAGTAGTGGATTTGCAAGAATCATCCATTTTCAACATATTACAATGACTAATGTTCAGAATCCTATCATCATCGATCAAAACTATTGTCCCCATAATCAAGGTTGCCCTGGACAGGTGTGTATTGTGTAGTTGTTAATCTTATCTTCTTTTTTTTTATTATTATTATTGTTATCTTTGACTCATTGTGCTCTCTTTTGAAATTTTTTTTTTTTTGCTAAGACGGAAATAAAAATATCAAATCTCTACCAACATAACCAAAAATTTCAACTTATAAAAGCCCTAATCAACCTTAAAAAAAAGGATAAATGCCCAACGTAAATTGCTTATTTTACAAGATTGATATATATATATATATATACACACATACATACAAACAAAGGGTACATATAAATCTATAATTTTATGTCAAATGAGGTTTTGATTCAATTAAATTCACAATGTTATCTTCATTCATTATATTTAAAGTATATGTTGATTTTTAGACTCTATCATCCCATTATTTTAGTATATTAAGTTTTGAGTAAAAAAAATATGACTTTAATATTCGTTATTTATAAGAGTAAAAATGTTCTAGGTTTAAAACTCAATTTTTGGTCCTTGAAATTTTAAGGAAGTAAAAGTTAAGGAACTCCAATTAATTGTAACGATTTATTCCTTTTTCCTTTAAAATATTTAGTTTTTGAACTTTAATATGCAACAATTTAGTCTCTATACTTTACAATTTGAAATGATTTTGTCTCTATCCTGAAAAATATATTTGAAATTTAATGAAACTTCTTATACATGTAAATTGTTTGCAACAAACTCAAGAAATAAATAATACAGAAAACGTAAATAGTAGAGAATCAACTCACAAATTTACGTGGTTCACAAACAATATGTTACATACGTCCACGAGACAGAGAGAGAACAATTTTATTAAAGAGAATGTTACAGAAAATACAAGATAGTGGCGCCTCTAGGATTAAAGAGTTTATGTAGTGCACTTCTCTAAACTTTAGGGTCTTAATCGTAAATAACCATAAATAATTAAATACGCCAAATACGAATTGAACTTAGCTTTCAGGGATGTTGCCCTTAAATCCCCACTTAGTCGTTCGAAGTGCAAATAACATATTCAAGGCACTTCAATAGATAAATTTATTACGAAACAATTTATTTATAAACTATAAAGGCTAAGCTGTTATGTAATAAAAATTAACCATTAATTTTGATGAGATTCATGACAGAGATTAATTAAATTGTAACAAATTTGAAAAGTATAGGGACTAAATCGTTACATATTAAAGTTCAATGAGTAAATTGTTGTAAATGTAAAAATGCAAAGGTTAAATCATTATAAACTAAAGTTCAGTGATTAAATTGTTAATTACTTCTATAAAAATTTAGGAATAAAACATGTTTGTTAACCAAGATTCTAAATTATTTACTTTTATAAAGATTTTTCAGAAAAAAGAAAATAATAACTAACCGTTTCTAAACAAATAAAAAAAATATATTAAAAAGCCAAATTGAGTTTAACTTGGCTATAATTGACTTGTCATCTTTTTTTTTAATTAGACAGAAGATTCAATTCGTTATCTATATAATTGTTGTACTAAAATTTAATTAAATTTGGTTGTTTGTGAATGAATAGAGTTCTAGAATTAAAGTTAGCGATGTGACATATAACGACATTCACGGGACATCGAACACACAAGTGGCCATGAAATTCGATTGTAGCCCAAAATTTCCATGCAAAGGAATAAGGTTGAAGGATGTTAAGCTGACTTACAAGAATGAAGTAGCCAAAGCTTCATGTAGTAATGCTGAAGGATTTGATGTTGGCTTGGTTCAGCCTATGGGTTGCTTTTAG ATGAGCCTTCAAACCCATTCAACTCATCCATATCCTCAACTACTTCAAACTCTTTTCTTCATACAAATCTCTCCCTATTCTAAAACACTTTATTTGCAAAAAATGGCTCTTCATACAAAATCATTTATTCTCTTGCTATTACTATTATCCATTATGTTCTTCAATTTAACTGCCTTTGCTGCTCCGTTAACATTCAACATTGTCGATTTTGGAGCCAAACCCGACAACGCCAAAATCGACTCATCAAAGGCCTTTCAATTGGCATGGATGCGTGCTTGTAGCTCTTCTAGACCAGCATCCATTTATGTGCCTAAGGCCAAATTCTACGTTCACAGTGCAACTTTTAATGGACCATGCAATAATAATGGCATTACTATACGTATTGATGGTACTCTCGTGGCTCCCTCAGACTTCCATCTCACTAGCAACTCTGAAGATTGGATCATTTTTCACAATGTTAATGGAGTTACTGTCTTGGGTGGTCCAAATATTCACATAGTAGTAAACGAGTGTCATAATGTAAAAATACAAGGACTAAAAGTCTCGGTCTCTAGCGATAGTCCAAACACCGATGGAATTCATGTAGGCAAATCATCTCATGTCACCATCCTCAACTCCAATATCGGCACTGGTGATGACTGCATCTCAATAGGCTCTGGCACCTCCAACTTATGGATAGAGAATATTGTTTGTGGACCTAGTCATGGAATTAGCATTGGAAGTTTAGGAAGAAAGTTCAAGGAGGACGGCGTTGAGAATGTGACAGTAAAATCATGTAGATTTATGAACACTCAAAATGGGGTGAGAATAAAAAGTTGGGAAAGGCCAAGTAGTGGATTTGCAAGAATCATCCATTTTCAACATATTACAATGACTAATGTTCAGAATCCTATCATCATCGATCAAAACTATTGTCCCCATAATCAAGGTTGCCCTGGACAGACGGAAATAAAAATATCAAATCTCTACCAACATAACCAAAAATTTCAACTTATAAAAGCCCTAATCAACCTTAAAAAAAAGGATAAATGCCCAACCCCAAAATTTCCATGCAAAGGAATAAGGTTGAAGGATGTTAAGCTGACTTACAAGAATGAAGTAGCCAAAGCTTCATGTAGTAATGCTGAAGGATTTGATGTTGGCTTGGTTCAGCCTATGGGTTGCTTTTAG ATGAGCCTTCAAACCCATTCAACTCATCCATATCCTCAACTACTTCAAACTCTTTTCTTCATACAAATCTCTCCCTATTCTAAAACACTTTATTTGCAAAAAATGGCTCTTCATACAAAATCATTTATTCTCTTGCTATTACTATTATCCATTATGTTCTTCAATTTAACTGCCTTTGCTGCTCCGTTAACATTCAACATTGTCGATTTTGGAGCCAAACCCGACAACGCCAAAATCGACTCATCAAAGGCCTTTCAATTGGCATGGATGCGTGCTTGTAGCTCTTCTAGACCAGCATCCATTTATGTGCCTAAGGCCAAATTCTACGTTCACAGTGCAACTTTTAATGGACCATGCAATAATAATGGCATTACTATACGTATTGATGGTACTCTCGTGGCTCCCTCAGACTTCCATCTCACTAGCAACTCTGAAGATTGGATCATTTTTCACAATGTTAATGGAGTTACTGTCTTGGGTGGTCCAAATATTCACATAGTAGTAAACGAGTGTCATAATGTAAAAATACAAGGACTAAAAGTCTCGGTCTCTAGCGATAGTCCAAACACCGATGGAATTCATGTAGGCAAATCATCTCATGTCACCATCCTCAACTCCAATATCGGCACTGGTGATGACTGCATCTCAATAGGCTCTGGCACCTCCAACTTATGGATAGAGAATATTGTTTGTGGACCTAGTCATGGAATTAGCATTGGAAGTTTAGGAAGAAAGTTCAAGGAGGACGGCGTTGAGAATGTGACAGTAAAATCATGTAGATTTATGAACACTCAAAATGGGGTGAGAATAAAAAGTTGGGAAAGGCCAAGTAGTGGATTTGCAAGAATCATCCATTTTCAACATATTACAATGACTAATGTTCAGAATCCTATCATCATCGATCAAAACTATTGTCCCCATAATCAAGGTTGCCCTGGACAGACGGAAATAAAAATATCAAATCTCTACCAACATAACCAAAAATTTCAACTTATAAAAGCCCTAATCAACCTTAAAAAAAAGGATAAATGCCCAACCCCAAAATTTCCATGCAAAGGAATAAGGTTGAAGGATGTTAAGCTGACTTACAAGAATGAAGTAGCCAAAGCTTCATGTAGTAATGCTGAAGGATTTGATGTTGGCTTGGTTCAGCCTATGGGTTGCTTTTAG MSLQTHSTHPYPQLLQTLFFIQISPYSKTLYLQKMALHTKSFILLLLLLSIMFFNLTAFAAPLTFNIVDFGAKPDNAKIDSSKAFQLAWMRACSSSRPASIYVPKAKFYVHSATFNGPCNNNGITIRIDGTLVAPSDFHLTSNSEDWIIFHNVNGVTVLGGPNIHIVVNECHNVKIQGLKVSVSSDSPNTDGIHVGKSSHVTILNSNIGTGDDCISIGSGTSNLWIENIVCGPSHGISIGSLGRKFKEDGVENVTVKSCRFMNTQNGVRIKSWERPSSGFARIIHFQHITMTNVQNPIIIDQNYCPHNQGCPGQTEIKISNLYQHNQKFQLIKALINLKKKDKCPTPKFPCKGIRLKDVKLTYKNEVAKASCSNAEGFDVGLVQPMGCF
BLAST of Lsi03G009050.1 vs. Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 1.9e-73 Identity = 138/238 (57.98%), Postives = 177/238 (74.37%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. Swiss-Prot
Match: QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2) HSP 1 Score: 216.9 bits (551), Expect = 4.0e-55 Identity = 143/382 (37.43%), Postives = 195/382 (51.05%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 9.0e-55 Identity = 116/229 (50.66%), Postives = 151/229 (65.94%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 1.0e-50 Identity = 133/389 (34.19%), Postives = 191/389 (49.10%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 3.7e-48 Identity = 137/397 (34.51%), Postives = 192/397 (48.36%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. TrEMBL
Match: A0A0A0K6Z5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G145950 PE=3 SV=1) HSP 1 Score: 474.6 bits (1220), Expect = 1.2e-130 Identity = 255/407 (62.65%), Postives = 291/407 (71.50%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. TrEMBL
Match: A0A067EKY6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041993mg PE=3 SV=1) HSP 1 Score: 377.1 bits (967), Expect = 2.6e-101 Identity = 206/393 (52.42%), Postives = 255/393 (64.89%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. TrEMBL
Match: A0A0B2QJV0_GLYSO (Polygalacturonase OS=Glycine soja GN=glysoja_029507 PE=3 SV=1) HSP 1 Score: 375.9 bits (964), Expect = 5.8e-101 Identity = 200/368 (54.35%), Postives = 252/368 (68.48%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. TrEMBL
Match: A0A0A0M095_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G627460 PE=3 SV=1) HSP 1 Score: 374.8 bits (961), Expect = 1.3e-100 Identity = 212/399 (53.13%), Postives = 249/399 (62.41%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. TrEMBL
Match: G7JIR7_MEDTR (Polygalacturonase OS=Medicago truncatula GN=MTR_4g083660 PE=3 SV=2) HSP 1 Score: 353.2 bits (905), Expect = 4.0e-94 Identity = 191/372 (51.34%), Postives = 238/372 (63.98%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. TAIR10
Match: AT1G05660.1 (AT1G05660.1 Pectin lyase-like superfamily protein) HSP 1 Score: 267.3 bits (682), Expect = 1.5e-71 Identity = 162/397 (40.81%), Postives = 219/397 (55.16%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. TAIR10
Match: AT3G59850.1 (AT3G59850.1 Pectin lyase-like superfamily protein) HSP 1 Score: 263.1 bits (671), Expect = 2.8e-70 Identity = 130/238 (54.62%), Postives = 165/238 (69.33%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. TAIR10
Match: AT2G43870.1 (AT2G43870.1 Pectin lyase-like superfamily protein) HSP 1 Score: 256.5 bits (654), Expect = 2.6e-68 Identity = 131/235 (55.74%), Postives = 164/235 (69.79%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. TAIR10
Match: AT2G43880.1 (AT2G43880.1 Pectin lyase-like superfamily protein) HSP 1 Score: 244.2 bits (622), Expect = 1.3e-64 Identity = 148/394 (37.56%), Postives = 210/394 (53.30%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. TAIR10
Match: AT2G43890.1 (AT2G43890.1 Pectin lyase-like superfamily protein) HSP 1 Score: 225.3 bits (573), Expect = 6.4e-59 Identity = 112/238 (47.06%), Postives = 153/238 (64.29%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. NCBI nr
Match: gi|700188819|gb|KGN44052.1| (hypothetical protein Csa_7G145950 [Cucumis sativus]) HSP 1 Score: 474.6 bits (1220), Expect = 1.7e-130 Identity = 255/407 (62.65%), Postives = 291/407 (71.50%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. NCBI nr
Match: gi|659094497|ref|XP_008448091.1| (PREDICTED: polygalacturonase-like [Cucumis melo]) HSP 1 Score: 455.3 bits (1170), Expect = 1.1e-124 Identity = 247/403 (61.29%), Postives = 284/403 (70.47%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. NCBI nr
Match: gi|568880467|ref|XP_006493140.1| (PREDICTED: polygalacturonase-like [Citrus sinensis]) HSP 1 Score: 378.6 bits (971), Expect = 1.3e-101 Identity = 207/393 (52.67%), Postives = 255/393 (64.89%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. NCBI nr
Match: gi|641832559|gb|KDO51591.1| (hypothetical protein CISIN_1g041993mg [Citrus sinensis]) HSP 1 Score: 377.1 bits (967), Expect = 3.7e-101 Identity = 206/393 (52.42%), Postives = 255/393 (64.89%), Query Frame = 1
BLAST of Lsi03G009050.1 vs. NCBI nr
Match: gi|734373884|gb|KHN20494.1| (Polygalacturonase [Glycine soja]) HSP 1 Score: 375.9 bits (964), Expect = 8.3e-101 Identity = 200/368 (54.35%), Postives = 252/368 (68.48%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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