Lsi03G009050 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G009050
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Polygalacturonase
Location	chr03 : 16668500 .. 16673664 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTAAAAAGAATTTAAGGATAATGTTTAATGTAGTAGTAAACATGAAAGGAGGCGGTAAAGTTGGAATGAGAATGGGCGATGAAAGTGGAGGAAGGAAATAGTCAACGCAATTGACCAACTCCAAATCCATTTCACTTTCTTCTCCGTTTTATTCTCCACTTCTTATGCTTTATTCAACTTTTTTTTCTTCCCACTTTTTCCCAAAATCTTTCTTTAATTCCCTTTTCCCCCATCCACATACGCCTCTTCAAATTCCCCCCCCCCTCCCCCCCCATCTTTCAATATTAACCCTAACAGTTATTCTAAAAATCTTATTCCAAAATTATTAAATTATTTTCATTCCATTTTATTTTTTACAACAGAAAATAAAACCCAGCTTCTACCAACTTCAAAATACAAATGTTTAGTACTTTTAGATAATTACATTTGTTTTTATGAAAAGTTTTAAAAGTCGTCAAAGAATATTTGGATAGTCACGTTTGTTTTGTACAATTTTTTAATGAAATTATCTTTAAATATTGTATTATTTTAACAATATCGTTCTATTTTTCAGTTAATTTATATATTAATTTCAAATAATTACATTTAAATGACATTTTAGTGACTTTAATAAGTTAATATTTTATTTTTATGAATTCTATTTATATTAATTTTATATATATTCTTTTAAAACAAGATAACTTATAATATTTTGAAATTTTTATAAAAAAATCACATTAAATATTAACTTTGATTTAGATTTGAAATGGTTAGACAAATTATATGGTTGATAGTATTTGTTTTAATCGATCATTCTTATTTAAATTGAGAAATTTTTTAAAGAAAGGATAGTAATTTGTGATTTTTTTTAAAATATTAAACAATCACTATTGAAAATGTATAAATAAAATTGAAAAGTTCTCAATGGAAAATAAATTGAGCTATATATTATACAATTTAAATATAATACTTCCATATATGTAAATGAAAACAAAAACATAGCTTATTGCTTAGAGTTATTTATTTACAGGAGGAATATATGGTTAATAATTATAAAATAAAAATAAAGAAGAGTGATATATAGCACACACAAACACACACAAAAAAATAAAAAAATAAAAAAAGAAGAAGGACAAATTAAAAAATAAAACGAAGATGCCCTCAACATGAAAAAATCTCGAAAATCTATGTTTTAAGAAGACATCCAAACCTCTTGAAATTCTCTTTTTATAAAGGAATCTAAGGATGTCCAAGTATTTTGAGATACTTGATGATTGTACATTATCACACAACAAATGGGCTTATCCAAATTTTCACAAAACAAACGACCCATTAAAATATAAAACATTGTAACTTAAAATTGTTGTCAACTTTAGTTAATATAATCGTCATCTATCGGTTGTTATTAATATTAGTAAAACATCAAAATCTAATTGTGTCCAATTTCTCTAATTTTTTTGCTTATATATTTTGCAATTATCGTTTTTATATGAAAAAAAACAATTAAGGCAACTACTGTGAATCACAAATCCTAATTAACAATATCCAAATTGACTTACTAATTTAGCAATTAGAAATTGTGGTCGGTATTAAACCTTCTTCAAGTGAAATTCTCTTGTTTTTTCTTTAAAAAAAAAATAGAATTTATCATTTGAGGGTTTATTGGTAAATTCACCTCACATGCATATTCATGATACACAAAAAGTGTAGGTCCCTTTTTAACGTAATAATTGGGAATTAATTTGTTTATCAAAATTGAGTGCTTTCTTCTCCATAATATATAAAGCCTTCAAACCCATTCAACTCATCCATATCCTCAACTACTTCAAACTCTTTTCTTCATACAAATCTCTCCCTATTCTAAAACACTTTATTTGCAAAAAATGGCTCTTCATACAAAATCATTTATTCTCTTGCTATTACTATTATCCATTATGTTCTTCAATTTAACTGCCTTTGCTGCTCCGTTAACATTCAACATTGTCGATTTTGGAGCCAAACCCGACAACGCCAAAATCGACTCATCAAAGGCCTTTCAATTGGCATGGATGCGTGCTTGTAGCTCTTCTAGACCAGCATCCATTTATGTGCCTAAGGCCAAATTCTACGTTCACAGTGCAACTTTTAATGGACCATGCAATAATAATGGCATTACTATACGTATTGATGGTACTCTCGTGGCTCCCTCAGACTTCCATCTCACTAGCAACTCTGAAGATTGGATCATTTTTCACAATGTTAATGGAGTTACTGTCTTGGGTGGTGTTATTGATGGCCAAGGATCTAGGCTTTGGGCTTGCAAAAAATCTGGCAAGACCTGTCCTCGTGGAACCACAGTATACGAACTTTACTAACCTGCATCTCGCATCTATATTTGTACAACTCACCTAATATTCCAATCACAATTTTTTACCTGATAAAGTTCTTTTTCTTTTTCTTTTATAATATTTTGAACTTTTTTCTACATAGTTGACATTTATTTTTAATTTTTTTTAAAATTTTTTTCTATATAGTTGGCAAAAATTACATAAAGATTGGTGCAATCATATTACTCCTATTTAAATTATGAGAAATAAAAATTTATCACATGATAATTCTAGTCGGCAACTAAATAGGTGCACCATATGCACATTATAGTATCACGTACAATAAATTAATTTATCTTTTACGTATAATAATATGATTAATATATATATATATGATTAAATAAATAGAAAATAAAGGATACCATTTTAAAAATTAAAATTATTATATGTTGTTTATTATTGTCACTTAGGTATAATTTTCAATTCACTTTCTAATATAAAAAGAACTATTTGTGCTTTGTGCAGTCACTGAAATTTACTAATTCCCAAAATATATTGGTTAGTGGATTAAGTTCACTAAATAGCCAAATATTCACATAGTAGTAAACGAGTGTCATAATGTAAAAATACAAGGACTAAAAGTCTCGGTCTCTAGCGATAGTCCAAACACCGATGGAATTCATGTAGGCAAATCATCTCATGTCACCATCCTCAACTCCAATATCGGCACTGGTGATGACTGCATCTCAATAGGCTCTGGCACCTCCAACTTATGGATAGAGAATATTGTTTGTGGACCTAGTCATGGAATTAGGTACGTAGACACTTGATAATTTTTTATCAATTATTTGGGGTTTCTTTTATGGATTATTCTGATTTTATTTGATTTTATTTGGTTGGTGTAGCATTGGAAGTTTAGGAAGAAAGTTCAAGGAGGACGGCGTTGAGAATGTGACAGTAAAATCATGTAGATTTATGAACACTCAAAATGGGGTGAGAATAAAAAGTTGGGAAAGGCCAAGTAGTGGATTTGCAAGAATCATCCATTTTCAACATATTACAATGACTAATGTTCAGAATCCTATCATCATCGATCAAAACTATTGTCCCCATAATCAAGGTTGCCCTGGACAGGTGTGTATTGTGTAGTTGTTAATCTTATCTTCTTTTTTTTTATTATTATTATTGTTATCTTTGACTCATTGTGCTCTCTTTTGAAATTTTTTTTTTTTTGCTAAGACGGAAATAAAAATATCAAATCTCTACCAACATAACCAAAAATTTCAACTTATAAAAGCCCTAATCAACCTTAAAAAAAAGGATAAATGCCCAACGTAAATTGCTTATTTTACAAGATTGATATATATATATATATATACACACATACATACAAACAAAGGGTACATATAAATCTATAATTTTATGTCAAATGAGGTTTTGATTCAATTAAATTCACAATGTTATCTTCATTCATTATATTTAAAGTATATGTTGATTTTTAGACTCTATCATCCCATTATTTTAGTATATTAAGTTTTGAGTAAAAAAAATATGACTTTAATATTCGTTATTTATAAGAGTAAAAATGTTCTAGGTTTAAAACTCAATTTTTGGTCCTTGAAATTTTAAGGAAGTAAAAGTTAAGGAACTCCAATTAATTGTAACGATTTATTCCTTTTTCCTTTAAAATATTTAGTTTTTGAACTTTAATATGCAACAATTTAGTCTCTATACTTTACAATTTGAAATGATTTTGTCTCTATCCTGAAAAATATATTTGAAATTTAATGAAACTTCTTATACATGTAAATTGTTTGCAACAAACTCAAGAAATAAATAATACAGAAAACGTAAATAGTAGAGAATCAACTCACAAATTTACGTGGTTCACAAACAATATGTTACATACGTCCACGAGACAGAGAGAGAACAATTTTATTAAAGAGAATGTTACAGAAAATACAAGATAGTGGCGCCTCTAGGATTAAAGAGTTTATGTAGTGCACTTCTCTAAACTTTAGGGTCTTAATCGTAAATAACCATAAATAATTAAATACGCCAAATACGAATTGAACTTAGCTTTCAGGGATGTTGCCCTTAAATCCCCACTTAGTCGTTCGAAGTGCAAATAACATATTCAAGGCACTTCAATAGATAAATTTATTACGAAACAATTTATTTATAAACTATAAAGGCTAAGCTGTTATGTAATAAAAATTAACCATTAATTTTGATGAGATTCATGACAGAGATTAATTAAATTGTAACAAATTTGAAAAGTATAGGGACTAAATCGTTACATATTAAAGTTCAATGAGTAAATTGTTGTAAATGTAAAAATGCAAAGGTTAAATCATTATAAACTAAAGTTCAGTGATTAAATTGTTAATTACTTCTATAAAAATTTAGGAATAAAACATGTTTGTTAACCAAGATTCTAAATTATTTACTTTTATAAAGATTTTTCAGAAAAAAGAAAATAATAACTAACCGTTTCTAAACAAATAAAAAAAATATATTAAAAAGCCAAATTGAGTTTAACTTGGCTATAATTGACTTGTCATCTTTTTTTTTAATTAGACAGAAGATTCAATTCGTTATCTATATAATTGTTGTACTAAAATTTAATTAAATTTGGTTGTTTGTGAATGAATAGAGTTCTAGAATTAAAGTTAGCGATGTGACATATAACGACATTCACGGGACATCGAACACACAAGTGGCCATGAAATTCGATTGTAGCCCAAAATTTCCATGCAAAGGAATAAGGTTGAAGGATGTTAAGCTGACTTACAAGAATGAAGTAGCCAAAGCTTCATGTAGTAATGCTGAAGGATTTGATGTTGGCTTGGTTCAGCCTATGGGTTGCTTTTAG

mRNA sequence

ATGAGCCTTCAAACCCATTCAACTCATCCATATCCTCAACTACTTCAAACTCTTTTCTTCATACAAATCTCTCCCTATTCTAAAACACTTTATTTGCAAAAAATGGCTCTTCATACAAAATCATTTATTCTCTTGCTATTACTATTATCCATTATGTTCTTCAATTTAACTGCCTTTGCTGCTCCGTTAACATTCAACATTGTCGATTTTGGAGCCAAACCCGACAACGCCAAAATCGACTCATCAAAGGCCTTTCAATTGGCATGGATGCGTGCTTGTAGCTCTTCTAGACCAGCATCCATTTATGTGCCTAAGGCCAAATTCTACGTTCACAGTGCAACTTTTAATGGACCATGCAATAATAATGGCATTACTATACGTATTGATGGTACTCTCGTGGCTCCCTCAGACTTCCATCTCACTAGCAACTCTGAAGATTGGATCATTTTTCACAATGTTAATGGAGTTACTGTCTTGGGTGGTCCAAATATTCACATAGTAGTAAACGAGTGTCATAATGTAAAAATACAAGGACTAAAAGTCTCGGTCTCTAGCGATAGTCCAAACACCGATGGAATTCATGTAGGCAAATCATCTCATGTCACCATCCTCAACTCCAATATCGGCACTGGTGATGACTGCATCTCAATAGGCTCTGGCACCTCCAACTTATGGATAGAGAATATTGTTTGTGGACCTAGTCATGGAATTAGCATTGGAAGTTTAGGAAGAAAGTTCAAGGAGGACGGCGTTGAGAATGTGACAGTAAAATCATGTAGATTTATGAACACTCAAAATGGGGTGAGAATAAAAAGTTGGGAAAGGCCAAGTAGTGGATTTGCAAGAATCATCCATTTTCAACATATTACAATGACTAATGTTCAGAATCCTATCATCATCGATCAAAACTATTGTCCCCATAATCAAGGTTGCCCTGGACAGACGGAAATAAAAATATCAAATCTCTACCAACATAACCAAAAATTTCAACTTATAAAAGCCCTAATCAACCTTAAAAAAAAGGATAAATGCCCAACCCCAAAATTTCCATGCAAAGGAATAAGGTTGAAGGATGTTAAGCTGACTTACAAGAATGAAGTAGCCAAAGCTTCATGTAGTAATGCTGAAGGATTTGATGTTGGCTTGGTTCAGCCTATGGGTTGCTTTTAG

Coding sequence (CDS)

ATGAGCCTTCAAACCCATTCAACTCATCCATATCCTCAACTACTTCAAACTCTTTTCTTCATACAAATCTCTCCCTATTCTAAAACACTTTATTTGCAAAAAATGGCTCTTCATACAAAATCATTTATTCTCTTGCTATTACTATTATCCATTATGTTCTTCAATTTAACTGCCTTTGCTGCTCCGTTAACATTCAACATTGTCGATTTTGGAGCCAAACCCGACAACGCCAAAATCGACTCATCAAAGGCCTTTCAATTGGCATGGATGCGTGCTTGTAGCTCTTCTAGACCAGCATCCATTTATGTGCCTAAGGCCAAATTCTACGTTCACAGTGCAACTTTTAATGGACCATGCAATAATAATGGCATTACTATACGTATTGATGGTACTCTCGTGGCTCCCTCAGACTTCCATCTCACTAGCAACTCTGAAGATTGGATCATTTTTCACAATGTTAATGGAGTTACTGTCTTGGGTGGTCCAAATATTCACATAGTAGTAAACGAGTGTCATAATGTAAAAATACAAGGACTAAAAGTCTCGGTCTCTAGCGATAGTCCAAACACCGATGGAATTCATGTAGGCAAATCATCTCATGTCACCATCCTCAACTCCAATATCGGCACTGGTGATGACTGCATCTCAATAGGCTCTGGCACCTCCAACTTATGGATAGAGAATATTGTTTGTGGACCTAGTCATGGAATTAGCATTGGAAGTTTAGGAAGAAAGTTCAAGGAGGACGGCGTTGAGAATGTGACAGTAAAATCATGTAGATTTATGAACACTCAAAATGGGGTGAGAATAAAAAGTTGGGAAAGGCCAAGTAGTGGATTTGCAAGAATCATCCATTTTCAACATATTACAATGACTAATGTTCAGAATCCTATCATCATCGATCAAAACTATTGTCCCCATAATCAAGGTTGCCCTGGACAGACGGAAATAAAAATATCAAATCTCTACCAACATAACCAAAAATTTCAACTTATAAAAGCCCTAATCAACCTTAAAAAAAAGGATAAATGCCCAACCCCAAAATTTCCATGCAAAGGAATAAGGTTGAAGGATGTTAAGCTGACTTACAAGAATGAAGTAGCCAAAGCTTCATGTAGTAATGCTGAAGGATTTGATGTTGGCTTGGTTCAGCCTATGGGTTGCTTTTAG

Protein sequence

MSLQTHSTHPYPQLLQTLFFIQISPYSKTLYLQKMALHTKSFILLLLLLSIMFFNLTAFAAPLTFNIVDFGAKPDNAKIDSSKAFQLAWMRACSSSRPASIYVPKAKFYVHSATFNGPCNNNGITIRIDGTLVAPSDFHLTSNSEDWIIFHNVNGVTVLGGPNIHIVVNECHNVKIQGLKVSVSSDSPNTDGIHVGKSSHVTILNSNIGTGDDCISIGSGTSNLWIENIVCGPSHGISIGSLGRKFKEDGVENVTVKSCRFMNTQNGVRIKSWERPSSGFARIIHFQHITMTNVQNPIIIDQNYCPHNQGCPGQTEIKISNLYQHNQKFQLIKALINLKKKDKCPTPKFPCKGIRLKDVKLTYKNEVAKASCSNAEGFDVGLVQPMGCF

Homology

[Close]

BLAST of Lsi03G009050 vs. Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.9e-73
Identity = 138/238 (57.98%), Postives = 177/238 (74.37%), Query Frame = 1


Query: 153 VNGVTVLGGPNIHIVVNECHNVKIQGLKVSVSSDSPNTDGIHVGKSSHVTILNSNIGTGD 212
           V+G+  L     HIV+N+  NV++QG++VS S +SPNTDGIHV  SS VTILNS I TGD
Sbjct: 160 VSGLASLNSQMFHIVINDFQNVQMQGVRVSRSGNSPNTDGIHVQMSSGVTILNSKIATGD 219

Query: 213 DCISIGSGTSNLWIENIVCGPSHGISIGSLGRKFKEDGVENVTVKSCRFMNTQNGVRIKS 272
           DC+SIG GTSNLWIE + CGP HGISIGSLG++ +E GV+NVTVK+  F  TQNG+RIKS
Sbjct: 220 DCVSIGPGTSNLWIEGVACGPGHGISIGSLGKEQEEAGVQNVTVKTVTFSGTQNGLRIKS 279

Query: 273 WERPSSGFARIIHFQHITMTNVQNPIIIDQNYCPHNQGCPGQTE-IKISNL-YQHNQKFQ 332
           W RPS+GFAR I FQH TM NV+NPI+IDQ+YCP N+GCPGQ   ++IS++ Y+      
Sbjct: 280 WGRPSTGFARNILFQHATMVNVENPIVIDQHYCPDNKGCPGQVSGVQISDVTYEDIHGTS 339

Query: 333 LIKALINLKKKDKCPTPKFPCKGIRLKDVKLTYKNEVAKASCSNAEGFDVGLVQPMGC 389
             +  +    K  C +PK PC+ I+L+DVKLTYKN+ A++SCS+A+G   G+VQP  C
Sbjct: 340 ATEVAV----KFDC-SPKHPCREIKLEDVKLTYKNQAAESSCSHADGTTEGVVQPTSC 392

[Close]

BLAST of Lsi03G009050 vs. Swiss-Prot
Match: QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2)

HSP 1 Score: 216.9 bits (551), Expect = 4.0e-55
Identity = 143/382 (37.43%), Postives = 195/382 (51.05%), Query Frame = 1


Query: 60  AAPLTFNIVDFGAKPDNAKIDSSKAFQLAWMRACSSSRPASIYVPKAKFYVHSA-TFNGP 119
           ++P +FN+  FGAK +    D SKAF  AW  ACSS+    I  PK + Y+  A TF+GP
Sbjct: 66  SSPRSFNVNTFGAKANGN--DDSKAFMKAWEAACSSTGIVYIVAPKNRDYMLKAVTFSGP 125

Query: 120 CNNNGITIRIDGTLVA---PSDFHLTSNSEDWIIFHNVNGVTVLGGPNI----------- 179
           C ++ I  +I G + A   PSD+        WI+F NVN + V GG  I           
Sbjct: 126 CKSSLIIFKIYGRIEAWENPSDY---KERRHWIVFENVNNLRVEGGGRIDGNGHIWWPKS 185

Query: 180 -------------------------------------HIVVNECHNVKIQGLKVSVSSDS 239
                                                H+   +C NVK   L V+  +DS
Sbjct: 186 CKINPQLPCLGAPTAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPADS 245

Query: 240 PNTDGIHVGKSSHVTILNSNIGTGDDCISIGSGTSNLWIENIVCGPSHGISIGSLGRKFK 299
           PNTDGIHV  + ++ I +S + TGDDCISI SG+ N+    I CGP HGISIGSLG    
Sbjct: 246 PNTDGIHVSGTQNILIQDSIVRTGDDCISIVSGSENVRATGITCGPGHGISIGSLGEDNS 305

Query: 300 EDGVENVTVKSCRFMNTQNGVRIKSWERPSSGFARIIHFQHITMTNVQNPIIIDQNYCPH 359
           E  V NV V     + T NGVRIK+W+    G A+ I FQ I M NV NPIII+Q+YC  
Sbjct: 306 EAYVSNVVVNKATLIGTTNGVRIKTWQ-GGHGMAKNIIFQDIIMKNVTNPIIINQDYCDR 365

Query: 360 NQGCPGQ-TEIKISNLYQHNQKFQLIKALINLKKKDKCPTPKFPCKGIRLKDVKLT--YK 387
            + CP Q + +++SN+   N +    +    +  K  C +   PC+GI +++VKL    +
Sbjct: 366 VEACPEQKSAVQVSNVLYKNIQGTSSRP---IAVKFVC-SKNIPCRGISMQNVKLVDQTQ 425

[Close]

BLAST of Lsi03G009050 vs. Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 9.0e-55
Identity = 116/229 (50.66%), Postives = 151/229 (65.94%), Query Frame = 1


Query: 153 VNGVTVLGGPNIHIVVNECHNVKIQGLKVSVSSDSPNTDGIHVGKSSHVTILNSNIGTGD 212
           ++G+T +     HIV++  +NV I G+KVS   +SPNTDGIHV  S  V I NS IGTGD
Sbjct: 166 ISGLTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESSHSVHITNSRIGTGD 225

Query: 213 DCISIGSGTSNLWIENIVCGPSHGISIGSLGRKFKEDGVENVTVKSCRFMNTQNGVRIKS 272
           DCISIG G++N++I+ I CGP HGISIGSLGR  +E GV+NVTV +  FM T NGVRIK+
Sbjct: 226 DCISIGPGSTNVFIQTIRCGPGHGISIGSLGRAEEEQGVDNVTVSNVDFMGTNNGVRIKT 285

Query: 273 WERPSSGFARIIHFQHITMTNVQNPIIIDQNYCPHNQGCPGQ-TEIKISNL-YQ--HNQK 332
           W + S+ FAR I FQHI M  V+NPIIIDQ+YC H + CP Q + +K+SN+ Y+  H   
Sbjct: 286 WGKDSNSFARNIVFQHINMKMVKNPIIIDQHYCLH-KPCPKQESGVKVSNVRYEDIHGTS 345

Query: 333 FQLIKALINLKKKDKCPTPKFPCKGIRLKDVKLTYKNEVAKASCSNAEG 378
              +  L++  K+        PC GI + DV L   +  A+ASC NA G
Sbjct: 346 NTEVAVLLDCSKEK-------PCTGIVMDDVNLVSVHRPAQASCDNANG 386

[Close]

BLAST of Lsi03G009050 vs. Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.0e-50
Identity = 133/389 (34.19%), Postives = 191/389 (49.10%), Query Frame = 1


Query: 49  LSIMFFNLTAFAAPLTFNIVDFGAKPDNAKIDSSKAFQLAWMRACSSSRPASIYVPKAK- 108
           L+   F L  F +    ++  FGA  D    D S+AF  AW   CS +      VP    
Sbjct: 8   LNFSLFFLQIFTSSNALDVTQFGAVGDGVT-DDSQAFLKAWEAVCSGTGDGQFVVPAGMT 67

Query: 109 FYVHSATFNGPCNNNGITIRIDGTLVAPSDFHLTSNSEDWIIFHNV-------------- 168
           F +    F G C +  + +++ G LVAPS  +   + + WI+F ++              
Sbjct: 68  FMLQPLKFQGSCKSTPVFVQMLGKLVAPSKGNWKGDKDQWILFTDIEGLVIEGDGEINGQ 127

Query: 169 -------------------------NGVTVLGGPNIHIVVNECHNVKIQGLKVSVSSDSP 228
                                    +G+T L  P  HI ++EC+ V I  L+++    SP
Sbjct: 128 GSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSP 187

Query: 229 NTDGIHVGKSSHVTILNSNIGTGDDCISIGSGTSNLWIENIVCGPSHGISIGSLGRKFKE 288
           NTDGI VG SS+V I +  I TGDDCI+I SGTSN+ I  I CGP HGISIGSLG+  + 
Sbjct: 188 NTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGET 247

Query: 289 DGVENVTVKSCRFMNTQNGVRIKSWERPSSGFARIIHFQHITMTNVQNPIIIDQNYCPHN 348
             VENV V++C F  T NG RIK+W+   SG+AR+I F  IT+ NV+NPIIIDQ Y   N
Sbjct: 248 ATVENVCVQNCNFRGTMNGARIKTWQ-GGSGYARMITFNGITLDNVENPIIIDQFY---N 307

Query: 349 QGCPGQTEIKISNLYQHNQKFQLIKALINLKKKD-----KCPTPKFPCKGIRLKDVKL-- 389
            G     + + S+  + ++   +    I   K +     +C + + PC  I L+D+K+  
Sbjct: 308 GGDSDNAKDRKSSAVEVSK--VVFSNFIGTSKSEYGVDFRC-SERVPCTEIFLRDMKIET 367

[Close]

BLAST of Lsi03G009050 vs. Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.7e-48
Identity = 137/397 (34.51%), Postives = 192/397 (48.36%), Query Frame = 1


Query: 42  FILLLLLLSIMFFNLTAFAAPLTFNIVDFGAKPDNAKIDSSKAFQLAWMRACSSSRPASI 101
           F L+LL L+    + T       F+I  +GA   N+  D S+A   A+  AC S+ P++I
Sbjct: 9   FALVLLFLAHFGESQTG-----VFDITKYGA---NSNADISEALLNAFKEACQSTSPSTI 68

Query: 102 YVPKAKFYVHSATFNGPCNNNGITIRIDGTLVAPSDFHLTSNSEDWIIFHNVNGVTVLGG 161
            +PK  F ++     GPC  + + ++I  TL APSD       E W+  + ++  T+ GG
Sbjct: 69  VIPKGTFTMNQVKLEGPC-KSPLELQIQATLKAPSDPSQLKVGE-WLTVNKLDQFTMSGG 128

Query: 162 ----------------------PNIHIVVNECHNVKIQGL-------------------- 221
                                 PN ++  N   N  I+ +                    
Sbjct: 129 GILDGQAAAAWECKQSKKCNKLPN-NLSFNSLTNSTIKDITTLDSKSFHVNVNQCKNLTF 188

Query: 222 ---KVSVSSDSPNTDGIHVGKSSHVTILNSNIGTGDDCISIGSGTSNLWIENIVCGPSHG 281
               VS  ++SPNTDGIHV +SS V I +SN  TGDDCIS+G  T  L+I  + CGP HG
Sbjct: 189 IRFNVSAPANSPNTDGIHVSRSSSVNITDSNFSTGDDCISVGDETEQLYITRVTCGPGHG 248

Query: 282 ISIGSLGRKFKEDGVENVTVKSCRFMNTQNGVRIKSWERPSSGFARIIHFQHITMTNVQN 341
           IS+GSLG    E  V  V V++C F NT NGVRIK+W     G    +HF+ I + NV N
Sbjct: 249 ISVGSLGGNPDEKPVVGVFVRNCTFTNTDNGVRIKTWPASHPGVVNDVHFEDIIVQNVSN 308

Query: 342 PIIIDQNYCPHNQGCPGQ--TEIKISNLYQHNQKFQLIKALINLKKKDKCPTPK-FPCKG 389
           P++IDQ YCP N+ C     +++KIS +      FQ IK     +        K  PC+G
Sbjct: 309 PVVIDQVYCPFNK-CNKDLPSQVKISKV-----SFQNIKGTSRTQDAVSLLRSKGVPCEG 368

[Close]

BLAST of Lsi03G009050 vs. TrEMBL
Match: A0A0A0K6Z5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G145950 PE=3 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 1.2e-130
Identity = 255/407 (62.65%), Postives = 291/407 (71.50%), Query Frame = 1


Query: 35  MALHT-KSFILLLLLLSIMFFN-LTAFAAPLTFNIVDFGAKPDNAKIDSSKAFQLAWMRA 94
           MALHT  SF+  L L  +M FN L AFA PLTFN++DFG KP+NA+ DSSKA QLAWM A
Sbjct: 3   MALHTIASFLFFLTLTVLMLFNNLAAFATPLTFNVLDFGTKPNNAETDSSKALQLAWMHA 62

Query: 95  CSSSRPASIYVPKAKFYVHSATFNGPCNNNGITIRIDGTLVAPSD--------------- 154
           CSSS+PA+IYVPKAKFYV SATFNGPC NN ITIRIDGTLVAPSD               
Sbjct: 63  CSSSKPATIYVPKAKFYVRSATFNGPCKNNDITIRIDGTLVAPSDFRLTSNSENWILFHN 122

Query: 155 -----------------FHLTSNSEDW-------IIFHN-----VNGVTVLGGPNIHIVV 214
                                 NS +        + F N     VNG+T L     HIVV
Sbjct: 123 VNGVTVIGGIIDGQGTQLWACKNSANTCPSGTTSLEFTNSQNILVNGLTSLNSQIFHIVV 182

Query: 215 NECHNVKIQGLKVSVSSDSPNTDGIHVGKSSHVTILNSNIGTGDDCISIGSGTSNLWIEN 274
           N+C NVK+QGLKV  +S+SPNTDGIHVG SSHVTILNSNI TGDDCISIG G+SNLWIEN
Sbjct: 183 NQCRNVKMQGLKVFAASNSPNTDGIHVGDSSHVTILNSNIRTGDDCISIGPGSSNLWIEN 242

Query: 275 IVCGPSHGISIGSLGRKFKEDGVENVTVKSCRFMNTQNGVRIKSWERPSSGFARIIHFQH 334
           +VCGP HGISIGSLG++ KE GV+NVTVKSC+FM+TQNGVRIKSW R SSGFA+ I FQH
Sbjct: 243 VVCGPGHGISIGSLGKELKEKGVQNVTVKSCKFMDTQNGVRIKSWGRQSSGFAKDIRFQH 302

Query: 335 ITMTNVQNPIIIDQNYCPHNQGCPGQ------TEIKISNLYQHNQKFQLIKALINLKKKD 390
           +TMTNVQNPIIIDQNYCPHNQGCPGQ      +++K  N++  +     IK         
Sbjct: 303 LTMTNVQNPIIIDQNYCPHNQGCPGQSSGVTVSDVKYKNIHGTSATPVAIKF-------- 362

[Close]

BLAST of Lsi03G009050 vs. TrEMBL
Match: A0A067EKY6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041993mg PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 2.6e-101
Identity = 206/393 (52.42%), Postives = 255/393 (64.89%), Query Frame = 1


Query: 42  FILLLLLLSIMFFNLTAFAAPLTFNIVDFGAKPDNAKIDSSKAFQLAWMRACSSSRPASI 101
           F++ +LLLSI  FN ++ AAP ++N+V FGAKPD  + DS+KAF  AW  AC S R A+I
Sbjct: 6   FLISILLLSI--FNTSSLAAPPSYNVVSFGAKPDG-RTDSTKAFLSAWANACGSPRAATI 65

Query: 102 YVPKAKFYVHSATFNGPCNNNGITIRIDGTLVAPSDFHLTSNSEDWIIFHNVNGVTVLGG 161
           YVP  +F++ +  F GPC NN ITIRIDGTLVAPSD+ +  N+ +W+ F +V+GVT+  G
Sbjct: 66  YVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNSG 125

Query: 162 P-------------------------------NIHI-------------VVNECHNVKIQ 221
                                           NI I             V N C+NVK++
Sbjct: 126 ILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLK 185

Query: 222 GLKVSVSSDSPNTDGIHVGKSSHVTILNSNIGTGDDCISIGSGTSNLWIENIVCGPSHGI 281
           G+KV  S +SPNTDGIHV  SS VTILN+ I TGDDC+SIG GTSNLWIEN+ CGP HGI
Sbjct: 186 GVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGI 245

Query: 282 SIGSLGRKFKEDGVENVTVKSCRFMNTQNGVRIKSWERPSSGFARIIHFQHITMTNVQNP 341
           SIGSLG+   E GV+NVTVK+  F  TQNG+RIKSW RPS+GFAR I F++  M NVQNP
Sbjct: 246 SIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNP 305

Query: 342 IIIDQNYCPHNQGCPGQTE-IKISNL-YQHNQKFQLIKALINLKKKDKCPTPKFPCKGIR 389
           IIIDQNYCP N GCPGQ   +KIS++ YQ        +  +N      C + K+PC  IR
Sbjct: 306 IIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNF----DC-SSKYPCSRIR 365

[Close]

BLAST of Lsi03G009050 vs. TrEMBL
Match: A0A0B2QJV0_GLYSO (Polygalacturonase OS=Glycine soja GN=glysoja_029507 PE=3 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 5.8e-101
Identity = 200/368 (54.35%), Postives = 252/368 (68.48%), Query Frame = 1


Query: 43  ILLLLLLSIMFFNLTAFAAPLTFNIVDFGAKPDNAKIDSSKAFQLAWMRACSSSRPASIY 102
           I L ++L     +  AF A  T+N+V+FGAK D  K DS+KAF  AW +AC+S+ PASIY
Sbjct: 14  ITLRVILGCWLCSSVAFGA--TYNVVNFGAKSDG-KTDSTKAFLNAWSKACASTNPASIY 73

Query: 103 VPKAKFYVHSATFNGPCNNNGITIRIDGTLVAPSDFHLTSNSEDWIIFHNVNGVTVLG-- 162
           VP+ KF + S TFNG CNN GI+I IDGTLVAPSD+ +T ++  W+ F  V+GV++ G  
Sbjct: 74  VPQGKFLLKSVTFNGKCNNKGISITIDGTLVAPSDYSVTGSAGTWLEFERVDGVSIRGTL 133

Query: 163 ----GPNI-------------HIVVNECHNVKIQGLKVSVSSDSPNTDGIHVGKSSHVTI 222
                 NI             HIV N C NVK+QG+KV    +SPNTDGIHV  SSH+TI
Sbjct: 134 AFTNSNNIAIGGLTSMNSQMFHIVFNGCQNVKLQGVKVLADGNSPNTDGIHVQMSSHITI 193

Query: 223 LNSNIGTGDDCISIGSGTSNLWIENIVCGPSHGISIGSLGRKFKEDGVENVTVKSCRFMN 282
           LNS I TGDDCIS+G GT+NLWIENI CGP HGISIGSLG+  KE GV+NVTVK+  F  
Sbjct: 194 LNSKIRTGDDCISVGPGTTNLWIENIACGPGHGISIGSLGKDLKEAGVQNVTVKTVTFTG 253

Query: 283 TQNGVRIKSWERPSSGFARIIHFQHITMTNVQNPIIIDQNYCPHNQGCPGQTE-IKISNL 342
           TQNGVRIK+W RPS+GF R + FQ   M NV+NP+IIDQNYCP+N+GCP Q   +K+S++
Sbjct: 254 TQNGVRIKTWGRPSNGFVRNVLFQDAIMVNVENPVIIDQNYCPNNKGCPDQASGVKVSDV 313

Query: 343 -YQHNQKFQLIKALINLKKKDKCPTPKFPCKGIRLKDVKLTYKNEVAKASCSNAEGFDVG 390
            YQ         +  ++  K  C + K+PC GI+L+DVKLTYKN+ A ASC++A G  +G
Sbjct: 314 TYQDIHG----TSATHVAVKFDC-SSKYPCNGIKLEDVKLTYKNQPALASCNHAGGAALG 373

[Close]

BLAST of Lsi03G009050 vs. TrEMBL
Match: A0A0A0M095_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G627460 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 1.3e-100
Identity = 212/399 (53.13%), Postives = 249/399 (62.41%), Query Frame = 1


Query: 35  MALHTKSFILLLLLLSIMFFNLTAFAAPLTFNIVDFGAKPDNAKIDSSKAFQLAWMRACS 94
           MA H   F   L L           A+  TFN+VDFGAKP N + DSS+AF+ AW  AC 
Sbjct: 1   MAFHKTLFFPFLFL---------TLASASTFNVVDFGAKP-NVQTDSSQAFEAAWASACR 60

Query: 95  SSRPASIYVPKAKFYVHSATFNGPCNNNGITIRIDGTLVAPSDFHL-------------- 154
           +    SIYVPK +FYV S  F GPCNNN ITIRIDGTL+APS++ +              
Sbjct: 61  ARTAVSIYVPKGRFYVASLAFEGPCNNNDITIRIDGTLLAPSNYGVIANSGNWITFRRVD 120

Query: 155 ----------TSNSEDW---------------IIFHN-----VNGVTVLGGPNIHIVVNE 214
                        S  W               + F N     V+G+T L     HIV+N 
Sbjct: 121 GVTLFGGVLDAQGSGLWACKNSKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVING 180

Query: 215 CHNVKIQGLKVSVSSDSPNTDGIHVGKSSHVTILNSNIGTGDDCISIGSGTSNLWIENIV 274
           C NVK QGLKVS + +SPNTDGIHV  SS VTILNS IGTGDDCISIG GTSNLWIEN+ 
Sbjct: 181 CQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVA 240

Query: 275 CGPSHGISIGSLGRKFKEDGVENVTVKSCRFMNTQNGVRIKSWERPSSGFARIIHFQHIT 334
           CGP HGISIGSLGR+ +EDGVENVTVKS  F NTQNGVRIK+W +PS+GFAR + FQ I 
Sbjct: 241 CGPGHGISIGSLGREVQEDGVENVTVKSATFTNTQNGVRIKTWGKPSNGFARSVIFQDIV 300

Query: 335 MTNVQNPIIIDQNYCPHNQGCPGQ-TEIKISNLYQHNQKFQLIKALINLKKKDKCPTPKF 389
           M NV+NPIIIDQNYCP N+GCPGQ + +KIS++   N       +   +  K  C + KF
Sbjct: 301 MVNVENPIIIDQNYCPDNKGCPGQDSGVKISDVTYRNIHG---TSATQVAMKFDC-SSKF 360

[Close]

BLAST of Lsi03G009050 vs. TrEMBL
Match: G7JIR7_MEDTR (Polygalacturonase OS=Medicago truncatula GN=MTR_4g083660 PE=3 SV=2)

HSP 1 Score: 353.2 bits (905), Expect = 4.0e-94
Identity = 191/372 (51.34%), Postives = 238/372 (63.98%), Query Frame = 1


Query: 64  TFNIVDFGAKPDNAKIDSSKAFQLAWMRACSSSRPASIYVPKAKFYVHSATFNGPCNNNG 123
           T+N++++GAKPD  K DS+KAF   W +ACSS  PASIYVP+ KF + +ATF+G C N  
Sbjct: 8   TYNVINYGAKPDG-KTDSTKAFGNVWAKACSSPYPASIYVPQGKFLLGTATFSGKCINKA 67

Query: 124 ITIRIDGTLVAPSDFHLT--------------------------------SNSED----- 183
           I+I IDGTLVA S++ +T                                 NS+      
Sbjct: 68  ISITIDGTLVASSNYRVTGKNGNWLKFQHVDGVSIRGGLLDGQGTALWDCKNSDKSNCPI 127

Query: 184 ---WIIFHN-----VNGVTVLGGPNIHIVVNECHNVKIQGLKVSVSSDSPNTDGIHVGKS 243
               + F N     ++G+T +     HIV N C NVK+QG+ +  + +SPNTDGIHV  S
Sbjct: 128 GATTLEFSNSKNIMISGLTSMNSQMFHIVFNGCENVKMQGVNIMAAGNSPNTDGIHVQMS 187

Query: 244 SHVTILNSNIGTGDDCISIGSGTSNLWIENIVCGPSHGISIGSLGRKFKEDGVENVTVKS 303
           SHVTI+NS I TGDDCISIG GTSNLWIENI CGP HGISIGSLG K  E GV+NVTVK+
Sbjct: 188 SHVTIVNSKIRTGDDCISIGPGTSNLWIENIACGPGHGISIGSLGWKLNEPGVQNVTVKT 247

Query: 304 CRFMNTQNGVRIKSWERPSSGFARIIHFQHITMTNVQNPIIIDQNYCPHNQGCPGQTE-I 363
             F  TQNGVRIKSW RPS+GF R I FQ   M NVQNPI+IDQNYCP+N+GCPGQ   I
Sbjct: 248 VTFTGTQNGVRIKSWGRPSNGFVRNIFFQDAIMVNVQNPIVIDQNYCPNNKGCPGQASGI 307

Query: 364 KISNL-YQHNQKFQLIKALINLKKKDKCPTPKFPCKGIRLKDVKLTYKNEVAKASCSNAE 389
           K+S + YQ+       +  +    K  C + K+PC GI++KDVKLTYKN+VA+ASC++A 
Sbjct: 308 KVSGVTYQNIHGTSATQVAV----KFDC-SSKYPCSGIKMKDVKLTYKNQVAEASCNHAG 367

[Close]

BLAST of Lsi03G009050 vs. TAIR10
Match: AT1G05660.1 (AT1G05660.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 267.3 bits (682), Expect = 1.5e-71
Identity = 162/397 (40.81%), Postives = 219/397 (55.16%), Query Frame = 1


Query: 39  TKSFILLLLLLSIMFFNLTAFAAPLTFNIVDFGAKPDNAKIDSSKAFQLAWMRACSSSRP 98
           TKS I   LL +++ F   + +A   FN+V FGAKPD    DS+ AF  AW  AC S+  
Sbjct: 2   TKSVIRFSLLFTLLTFIDVSISASNVFNVVSFGAKPDGVT-DSTGAFLKAWQGACVSASS 61

Query: 99  ASIYVPKAKFYVHSATFNGPCNNNGITIRIDGTLVAPSDFHLTSNSEDWIIFHNVNGVTV 158
           A++ VPK  F +   TF GPC +  IT ++ GT++AP D+    NS  WI+F+ VN  ++
Sbjct: 62  ATVVVPKGTFLLKVITFGGPCKSK-ITFQVAGTVIAPEDYRTFGNSGFWILFNKVNRFSL 121

Query: 159 LGG--------------------PNIH-IVVNECHNVKIQGLKVSVSSDSPNT-DGI--- 218
           +GG                    P +  I  N   +V I G+K   S  +  T +G    
Sbjct: 122 VGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVTHMTLNGCTNV 181

Query: 219 -------------------HVGKSSHVTILNSNIGTGDDCISIGSGTSNLWIENIVCGPS 278
                              HV  S+ VT   S + TGDDC++IG GT NL I  + CGP 
Sbjct: 182 VVRNVKLVAPGNSPNTDGFHVQHSTGVTFTGSTVQTGDDCVAIGPGTRNLLITKLACGPG 241

Query: 279 HGISIGSLGRKFKEDGVENVTVKSCRFMNTQNGVRIKSWERPSSGFARIIHFQHITMTNV 338
           HG+SIGSL ++ KEDGVENVTV S  F  +QNGVRIKSW RPS+GF R + FQ + M NV
Sbjct: 242 HGVSIGSLAKELKEDGVENVTVSSSVFTGSQNGVRIKSWARPSNGFVRTVFFQDLVMKNV 301

Query: 339 QNPIIIDQNYCPHNQGCPGQ-TEIKISNL-YQHNQKFQLIKALINLKKKDKCPTPKFPCK 389
           +NPIIIDQNYCP ++GCP + + +KIS + Y++ Q     +  + L       +   PC 
Sbjct: 302 ENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKL-----VCSKSSPCT 361

[Close]

BLAST of Lsi03G009050 vs. TAIR10
Match: AT3G59850.1 (AT3G59850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 263.1 bits (671), Expect = 2.8e-70
Identity = 130/238 (54.62%), Postives = 165/238 (69.33%), Query Frame = 1


Query: 153 VNGVTVLGGPNIHIVVNECHNVKIQGLKVSVSSDSPNTDGIHVGKSSHVTILNSNIGTGD 212
           ++G+T L     H+ +N C NVK+ G+KVS   +SPNTDGIHV  SS V+ILNS I TGD
Sbjct: 155 ISGLTSLNSQMFHVAINGCSNVKLDGVKVSADGNSPNTDGIHVQSSSTVSILNSKISTGD 214

Query: 213 DCISIGSGTSNLWIENIVCGPSHGISIGSLGRKFKEDGVENVTVKSCRFMNTQNGVRIKS 272
           DC+SIG GT+ LWIEN+ CGP HGISIGSLG++  E GV+N+TVK+  F  T+NGVRIKS
Sbjct: 215 DCVSIGPGTNGLWIENVACGPGHGISIGSLGKESVEVGVQNITVKTATFTGTENGVRIKS 274

Query: 273 WERPSSGFARIIHFQHITMTNVQNPIIIDQNYCPHNQGCPGQTE-IKISNLYQHNQKFQL 332
           W RPS+GFA+ I FQH  M NVQNPI+IDQNYCP N+ CP Q   IKIS++      F +
Sbjct: 275 WARPSNGFAKNIRFQHCVMNNVQNPIVIDQNYCPGNENCPNQVSGIKISDV----MFFDI 334

Query: 333 I-KALINLKKKDKCPTPKFPCKGIRLKDVKLTYKNEVAKASCSNAEGFDVGLVQPMGC 389
              +   +  K  C + K PC GIR++DVKLTY+N+ A   CS+A G + G  +P  C
Sbjct: 335 HGTSATEVGVKLDCSSKK-PCTGIRIQDVKLTYRNKPATTDCSHAGGSEAGFQRPNSC 387

[Close]

BLAST of Lsi03G009050 vs. TAIR10
Match: AT2G43870.1 (AT2G43870.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 256.5 bits (654), Expect = 2.6e-68
Identity = 131/235 (55.74%), Postives = 164/235 (69.79%), Query Frame = 1


Query: 153 VNGVTVLGGPNIHIVVNECHNVKIQGLKVSVSSDSPNTDGIHVGKSSHVTILNSNIGTGD 212
           V+G+T L     H+V+N C+NVK+QG+KV  + +SPNTDGIHV  SS V+I N+ I TGD
Sbjct: 153 VSGLTSLNSQMFHVVINGCNNVKLQGVKVLAAGNSPNTDGIHVQSSSSVSIFNTKISTGD 212

Query: 213 DCISIGSGTSNLWIENIVCGPSHGISIGSLGRKFKEDGVENVTVKSCRFMNTQNGVRIKS 272
           DC+SIG GT+ LWIEN+ CGP HGISIGSLG+   E GV+NVTVK+  F  T NGVRIKS
Sbjct: 213 DCVSIGPGTNGLWIENVACGPGHGISIGSLGKDSVESGVQNVTVKTVTFTGTDNGVRIKS 272

Query: 273 WERPSSGFARIIHFQHITMTNVQNPIIIDQNYCPHNQGCPGQTE-IKISN-LYQHNQKFQ 332
           W RPSSGFA+ I FQH  M NV+NPIIIDQNYCP +  CP Q   IKIS+ L+       
Sbjct: 273 WARPSSGFAKNIRFQHCVMNNVENPIIIDQNYCP-DHDCPRQVSGIKISDVLFVDIHGTS 332

Query: 333 LIKALINLKKKDKCPTPKFPCKGIRLKDVKLTYKNEVAKASCSNAEGFDVGLVQP 386
             +  + L     C + K PC GIRL+DVKLTY+N+ A ++C++A G + G  QP
Sbjct: 333 ATEVGVKL----DCSSKK-PCTGIRLEDVKLTYQNKPAASACTHAGGIEAGFFQP 381

[Close]

BLAST of Lsi03G009050 vs. TAIR10
Match: AT2G43880.1 (AT2G43880.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 244.2 bits (622), Expect = 1.3e-64
Identity = 148/394 (37.56%), Postives = 210/394 (53.30%), Query Frame = 1


Query: 41  SFILLLLLLSI-MFFNLTAFAAPLTFNIVDFGAKPDNAKIDSSKAFQLAWMRACSSSRPA 100
           SF   ++  SI +FF + +  A  +FN+  +GA+ D  + D++K+F  AW  AC S   A
Sbjct: 6   SFPCAIIFFSINIFFLIKSSHAMPSFNVQRYGARGDG-RADATKSFLTAWSLACGSRARA 65

Query: 101 SIYVPKAKFYVHSATFNGPCNN-------------------------------NGITIRI 160
            +YVP+  + V +  F GPC N                               N I++  
Sbjct: 66  MVYVPRGTYLVKNLVFWGPCKNIITFKNDGTLVAPANYWDIGNSGYWILFAKVNRISV-Y 125

Query: 161 DGTLVAPSDFHLT-------------SNSEDWIIFHNVNGVTVLGGPNIHIVVNECHNVK 220
            GT+ A    + +             S S  W     ++G++     N+H+ V+   NV+
Sbjct: 126 GGTIDARGAGYWSCRKKGSHCPQGARSISFSWCNNVLLSGLSSFNSQNMHVTVHHSSNVR 185

Query: 221 IQGLKVSVSSDSPNTDGIHVGKSSHVTILNSNIGTGDDCISIGSGTSNLWIENIVCGPSH 280
           I+ +++   S SPNTDGIHV  SS VTI    I TGDDCI++  G+ N+WIE + CGP H
Sbjct: 186 IENVRIRAPSGSPNTDGIHVQSSSGVTISGGTIATGDDCIALSQGSRNIWIERVNCGPGH 245

Query: 281 GISIGSLGRKFKEDGVENVTVKSCRFMNTQNGVRIKSWERPSSGFARIIHFQHITMTNVQ 340
           GISIGSLG    E+GV+NVTV S  F  TQNGVRIK+W RPS GF   + F+++ M NV+
Sbjct: 246 GISIGSLGDYANEEGVQNVTVTSSVFTKTQNGVRIKTWARPSRGFVNNVVFRNLIMNNVE 305

Query: 341 NPIIIDQNYCPHNQGCPGQTE-IKISNLYQHNQKFQLIKALINLKKKDKCPTPKFPCKGI 389
           NP+IIDQNYCP+ +GCP Q+  +KIS +   N K     +   +  K  C      C G+
Sbjct: 306 NPVIIDQNYCPNGKGCPRQSSGVKISGVTFANIKG---TSTTPIAMKLDCSGSNH-CTGL 365

[Close]

BLAST of Lsi03G009050 vs. TAIR10
Match: AT2G43890.1 (AT2G43890.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 225.3 bits (573), Expect = 6.4e-59
Identity = 112/238 (47.06%), Postives = 153/238 (64.29%), Query Frame = 1


Query: 153 VNGVTVLGGPNIHIVVNECHNVKIQGLKVSVSSDSPNTDGIHVGKSSHVTILNSNIGTGD 212
           V+G+T +     H+V+N C+NV ++ +K+     SPNTDG+HV  S+ VT+ +    TGD
Sbjct: 159 VSGLTSINSQTTHLVINSCNNVIVRKVKLVAPDQSPNTDGLHVQGSAGVTVTDGTFHTGD 218

Query: 213 DCISIGSGTSNLWIENIVCGPSHGISIGSLGRKFKEDGVENVTVKSCRFMNTQNGVRIKS 272
           DCISIG GT NL++  + CGP HGISIGSLGR   E GVEN+T+ +  F  + NGVRIK+
Sbjct: 219 DCISIGPGTRNLYMSKLNCGPGHGISIGSLGRDANEAGVENITLINSVFSGSDNGVRIKT 278

Query: 273 WERPSSGFARIIHFQHITMTNVQNPIIIDQNYCPHNQGCPGQ-TEIKISN-LYQHNQKFQ 332
           W R S+GF R + FQ++ M NVQNPII+DQNYCP NQGCP Q + +KIS  +Y++ Q   
Sbjct: 279 WARQSTGFVRNVLFQNLIMKNVQNPIIVDQNYCPSNQGCPKQGSGVKISQVVYRNIQGTS 338

Query: 333 LIKALINLKKKDKCPTPKFPCKGIRLKDVKLTYKNEVAKASCSNAEGFDVGLVQPMGC 389
             +  +       C     PC+ IRL D+KLT+    A ++C N +G   G+V P GC
Sbjct: 339 RTQQALTF----DCSRSN-PCQAIRLHDIKLTFNGRSATSTCKNIKGVKAGVVMPQGC 391

[Close]

BLAST of Lsi03G009050 vs. NCBI nr
Match: gi|700188819|gb|KGN44052.1| (hypothetical protein Csa_7G145950 [Cucumis sativus])

HSP 1 Score: 474.6 bits (1220), Expect = 1.7e-130
Identity = 255/407 (62.65%), Postives = 291/407 (71.50%), Query Frame = 1


Query: 35  MALHT-KSFILLLLLLSIMFFN-LTAFAAPLTFNIVDFGAKPDNAKIDSSKAFQLAWMRA 94
           MALHT  SF+  L L  +M FN L AFA PLTFN++DFG KP+NA+ DSSKA QLAWM A
Sbjct: 3   MALHTIASFLFFLTLTVLMLFNNLAAFATPLTFNVLDFGTKPNNAETDSSKALQLAWMHA 62

Query: 95  CSSSRPASIYVPKAKFYVHSATFNGPCNNNGITIRIDGTLVAPSD--------------- 154
           CSSS+PA+IYVPKAKFYV SATFNGPC NN ITIRIDGTLVAPSD               
Sbjct: 63  CSSSKPATIYVPKAKFYVRSATFNGPCKNNDITIRIDGTLVAPSDFRLTSNSENWILFHN 122

Query: 155 -----------------FHLTSNSEDW-------IIFHN-----VNGVTVLGGPNIHIVV 214
                                 NS +        + F N     VNG+T L     HIVV
Sbjct: 123 VNGVTVIGGIIDGQGTQLWACKNSANTCPSGTTSLEFTNSQNILVNGLTSLNSQIFHIVV 182

Query: 215 NECHNVKIQGLKVSVSSDSPNTDGIHVGKSSHVTILNSNIGTGDDCISIGSGTSNLWIEN 274
           N+C NVK+QGLKV  +S+SPNTDGIHVG SSHVTILNSNI TGDDCISIG G+SNLWIEN
Sbjct: 183 NQCRNVKMQGLKVFAASNSPNTDGIHVGDSSHVTILNSNIRTGDDCISIGPGSSNLWIEN 242

Query: 275 IVCGPSHGISIGSLGRKFKEDGVENVTVKSCRFMNTQNGVRIKSWERPSSGFARIIHFQH 334
           +VCGP HGISIGSLG++ KE GV+NVTVKSC+FM+TQNGVRIKSW R SSGFA+ I FQH
Sbjct: 243 VVCGPGHGISIGSLGKELKEKGVQNVTVKSCKFMDTQNGVRIKSWGRQSSGFAKDIRFQH 302

Query: 335 ITMTNVQNPIIIDQNYCPHNQGCPGQ------TEIKISNLYQHNQKFQLIKALINLKKKD 390
           +TMTNVQNPIIIDQNYCPHNQGCPGQ      +++K  N++  +     IK         
Sbjct: 303 LTMTNVQNPIIIDQNYCPHNQGCPGQSSGVTVSDVKYKNIHGTSATPVAIKF-------- 362

[Close]

BLAST of Lsi03G009050 vs. NCBI nr
Match: gi|659094497|ref|XP_008448091.1| (PREDICTED: polygalacturonase-like [Cucumis melo])

HSP 1 Score: 455.3 bits (1170), Expect = 1.1e-124
Identity = 247/403 (61.29%), Postives = 284/403 (70.47%), Query Frame = 1


Query: 35  MALHT-KSFILLLLLLSIMFFN-LTAFAAPLTFNIVDFGAKPDNAKIDSSKAFQLAWMRA 94
           MALH   SF+L   L  +M FN L AF  PLTFN+VDFG KP+NA+ DSSKA QLAWM A
Sbjct: 1   MALHAITSFLLFSTLTVLMLFNNLAAFPTPLTFNVVDFGTKPNNAETDSSKALQLAWMHA 60

Query: 95  CSSSRPASIYVPKAKFYVHSATFNGPCNNNGITIRIDGTLVAPS---------------- 154
           CSSS+PA+IYVPKAKFYV SATFNGPC NN ITIRIDG L+APS                
Sbjct: 61  CSSSKPATIYVPKAKFYVRSATFNGPCKNNHITIRIDGALMAPSDFHLTSNSENWILFHN 120

Query: 155 ----------------DFHLTSNSEDW-------IIFHN-----VNGVTVLGGPNIHIVV 214
                                 NS +        + F N     VNG+T L     HIVV
Sbjct: 121 VNGVTVLGGILDGQGTQLWACKNSANTCPRGTTSLEFTNSQNILVNGLTALNSQLYHIVV 180

Query: 215 NECHNVKIQGLKVSVSSDSPNTDGIHVGKSSHVTILNSNIGTGDDCISIGSGTSNLWIEN 274
           N+C NVK+QGLKVS + +SPNTDGIHVG SSHVTILN+NI TGDDCISIG G+SNLWIEN
Sbjct: 181 NQCRNVKMQGLKVSAAGNSPNTDGIHVGDSSHVTILNTNIRTGDDCISIGPGSSNLWIEN 240

Query: 275 IVCGPSHGISIGSLGRKFKEDGVENVTVKSCRFMNTQNGVRIKSWERPSSGFARIIHFQH 334
           I CGP HGISIGSL + FKE GV+NVTVKSC+FM+TQNGVRIKSW R S GFAR I FQH
Sbjct: 241 IACGPGHGISIGSLAKDFKEKGVQNVTVKSCKFMDTQNGVRIKSWGRQSIGFARNIRFQH 300

Query: 335 ITMTNVQNPIIIDQNYCPHNQGCPGQTEIKISNLYQHNQKFQLIK--ALINLKKKDKCPT 390
           +TMTNVQNPIIIDQNYCPHNQGCPGQ+    S +   + K+  I+  +   +  K  C +
Sbjct: 301 LTMTNVQNPIIIDQNYCPHNQGCPGQS----SGVAVSDVKYTDIRGTSATPVAIKFDC-S 360

[Close]

BLAST of Lsi03G009050 vs. NCBI nr
Match: gi|568880467|ref|XP_006493140.1| (PREDICTED: polygalacturonase-like [Citrus sinensis])

HSP 1 Score: 378.6 bits (971), Expect = 1.3e-101
Identity = 207/393 (52.67%), Postives = 255/393 (64.89%), Query Frame = 1


Query: 42  FILLLLLLSIMFFNLTAFAAPLTFNIVDFGAKPDNAKIDSSKAFQLAWMRACSSSRPASI 101
           F++ +LLLSI  FN ++ AAP ++N+V FGAKPD  + DS+KAF  AW  AC S R A+I
Sbjct: 10  FLISILLLSI--FNTSSLAAPPSYNVVSFGAKPDG-RTDSTKAFLSAWANACGSPRAATI 69

Query: 102 YVPKAKFYVHSATFNGPCNNNGITIRIDGTLVAPSDFHLTSNSEDWIIFHNVNGVTVLGG 161
           YVP  +F++ +  F GPC NN ITIRIDGTLVAPSD+ +  N+ +W+ F +V+GVT+  G
Sbjct: 70  YVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNSG 129

Query: 162 P-------------------------------NIHI-------------VVNECHNVKIQ 221
                                           NI I             V N C+NVK++
Sbjct: 130 ILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLK 189

Query: 222 GLKVSVSSDSPNTDGIHVGKSSHVTILNSNIGTGDDCISIGSGTSNLWIENIVCGPSHGI 281
           G+KV  S +SPNTDGIHV  SS VTILN+ I TGDDC+SIG GTSNLWIEN+ CGP HGI
Sbjct: 190 GVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGI 249

Query: 282 SIGSLGRKFKEDGVENVTVKSCRFMNTQNGVRIKSWERPSSGFARIIHFQHITMTNVQNP 341
           SIGSLG+   E GV+NVTVK+  F  TQNG+RIKSW RPS+GFAR I FQ+  M NVQNP
Sbjct: 250 SIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFQNAIMKNVQNP 309

Query: 342 IIIDQNYCPHNQGCPGQTE-IKISNL-YQHNQKFQLIKALINLKKKDKCPTPKFPCKGIR 389
           IIIDQNYCP N GCPGQ   +KIS++ YQ        +  +N      C + K+PC  IR
Sbjct: 310 IIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNF----DC-SSKYPCSRIR 369

[Close]

BLAST of Lsi03G009050 vs. NCBI nr
Match: gi|641832559|gb|KDO51591.1| (hypothetical protein CISIN_1g041993mg [Citrus sinensis])

HSP 1 Score: 377.1 bits (967), Expect = 3.7e-101
Identity = 206/393 (52.42%), Postives = 255/393 (64.89%), Query Frame = 1


Query: 42  FILLLLLLSIMFFNLTAFAAPLTFNIVDFGAKPDNAKIDSSKAFQLAWMRACSSSRPASI 101
           F++ +LLLSI  FN ++ AAP ++N+V FGAKPD  + DS+KAF  AW  AC S R A+I
Sbjct: 6   FLISILLLSI--FNTSSLAAPPSYNVVSFGAKPDG-RTDSTKAFLSAWANACGSPRAATI 65

Query: 102 YVPKAKFYVHSATFNGPCNNNGITIRIDGTLVAPSDFHLTSNSEDWIIFHNVNGVTVLGG 161
           YVP  +F++ +  F GPC NN ITIRIDGTLVAPSD+ +  N+ +W+ F +V+GVT+  G
Sbjct: 66  YVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNSG 125

Query: 162 P-------------------------------NIHI-------------VVNECHNVKIQ 221
                                           NI I             V N C+NVK++
Sbjct: 126 ILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLK 185

Query: 222 GLKVSVSSDSPNTDGIHVGKSSHVTILNSNIGTGDDCISIGSGTSNLWIENIVCGPSHGI 281
           G+KV  S +SPNTDGIHV  SS VTILN+ I TGDDC+SIG GTSNLWIEN+ CGP HGI
Sbjct: 186 GVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGI 245

Query: 282 SIGSLGRKFKEDGVENVTVKSCRFMNTQNGVRIKSWERPSSGFARIIHFQHITMTNVQNP 341
           SIGSLG+   E GV+NVTVK+  F  TQNG+RIKSW RPS+GFAR I F++  M NVQNP
Sbjct: 246 SIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNP 305

Query: 342 IIIDQNYCPHNQGCPGQTE-IKISNL-YQHNQKFQLIKALINLKKKDKCPTPKFPCKGIR 389
           IIIDQNYCP N GCPGQ   +KIS++ YQ        +  +N      C + K+PC  IR
Sbjct: 306 IIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNF----DC-SSKYPCSRIR 365

[Close]

BLAST of Lsi03G009050 vs. NCBI nr
Match: gi|734373884|gb|KHN20494.1| (Polygalacturonase [Glycine soja])

HSP 1 Score: 375.9 bits (964), Expect = 8.3e-101
Identity = 200/368 (54.35%), Postives = 252/368 (68.48%), Query Frame = 1


Query: 43  ILLLLLLSIMFFNLTAFAAPLTFNIVDFGAKPDNAKIDSSKAFQLAWMRACSSSRPASIY 102
           I L ++L     +  AF A  T+N+V+FGAK D  K DS+KAF  AW +AC+S+ PASIY
Sbjct: 14  ITLRVILGCWLCSSVAFGA--TYNVVNFGAKSDG-KTDSTKAFLNAWSKACASTNPASIY 73

Query: 103 VPKAKFYVHSATFNGPCNNNGITIRIDGTLVAPSDFHLTSNSEDWIIFHNVNGVTVLG-- 162
           VP+ KF + S TFNG CNN GI+I IDGTLVAPSD+ +T ++  W+ F  V+GV++ G  
Sbjct: 74  VPQGKFLLKSVTFNGKCNNKGISITIDGTLVAPSDYSVTGSAGTWLEFERVDGVSIRGTL 133

Query: 163 ----GPNI-------------HIVVNECHNVKIQGLKVSVSSDSPNTDGIHVGKSSHVTI 222
                 NI             HIV N C NVK+QG+KV    +SPNTDGIHV  SSH+TI
Sbjct: 134 AFTNSNNIAIGGLTSMNSQMFHIVFNGCQNVKLQGVKVLADGNSPNTDGIHVQMSSHITI 193

Query: 223 LNSNIGTGDDCISIGSGTSNLWIENIVCGPSHGISIGSLGRKFKEDGVENVTVKSCRFMN 282
           LNS I TGDDCIS+G GT+NLWIENI CGP HGISIGSLG+  KE GV+NVTVK+  F  
Sbjct: 194 LNSKIRTGDDCISVGPGTTNLWIENIACGPGHGISIGSLGKDLKEAGVQNVTVKTVTFTG 253

Query: 283 TQNGVRIKSWERPSSGFARIIHFQHITMTNVQNPIIIDQNYCPHNQGCPGQTE-IKISNL 342
           TQNGVRIK+W RPS+GF R + FQ   M NV+NP+IIDQNYCP+N+GCP Q   +K+S++
Sbjct: 254 TQNGVRIKTWGRPSNGFVRNVLFQDAIMVNVENPVIIDQNYCPNNKGCPDQASGVKVSDV 313

Query: 343 -YQHNQKFQLIKALINLKKKDKCPTPKFPCKGIRLKDVKLTYKNEVAKASCSNAEGFDVG 390
            YQ         +  ++  K  C + K+PC GI+L+DVKLTYKN+ A ASC++A G  +G
Sbjct: 314 TYQDIHG----TSATHVAVKFDC-SSKYPCNGIKLEDVKLTYKNQPALASCNHAGGAALG 373

The following BLAST results are available for this feature:

BLAST of Lsi03G009050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PGLR_PRUPE	1.9e-73	57.98	Polygalacturonase OS=Prunus persica PE=2 SV=1	[more]
QRT2_ARATH	4.0e-55	37.43	Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2	[more]
PGLR6_ARATH	9.0e-55	50.66	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 S...	[more]
PGLR3_ARATH	1.0e-50	34.19	Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 S...	[more]
PGLR_TOBAC	3.7e-48	34.51	Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1	[more]

BLAST of Lsi03G009050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6Z5_CUCSA	1.2e-130	62.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G145950 PE=3 SV=1	[more]
A0A067EKY6_CITSI	2.6e-101	52.42	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041993mg PE=3 SV=1	[more]
A0A0B2QJV0_GLYSO	5.8e-101	54.35	Polygalacturonase OS=Glycine soja GN=glysoja_029507 PE=3 SV=1	[more]
A0A0A0M095_CUCSA	1.3e-100	53.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G627460 PE=3 SV=1	[more]
G7JIR7_MEDTR	4.0e-94	51.34	Polygalacturonase OS=Medicago truncatula GN=MTR_4g083660 PE=3 SV=2	[more]

BLAST of Lsi03G009050 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05660.1	1.5e-71	40.81	Pectin lyase-like superfamily protein	[more]
AT3G59850.1	2.8e-70	54.62	Pectin lyase-like superfamily protein	[more]
AT2G43870.1	2.6e-68	55.74	Pectin lyase-like superfamily protein	[more]
AT2G43880.1	1.3e-64	37.56	Pectin lyase-like superfamily protein	[more]
AT2G43890.1	6.4e-59	47.06	Pectin lyase-like superfamily protein	[more]

BLAST of Lsi03G009050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188819\|gb\|KGN44052.1\|	1.7e-130	62.65	hypothetical protein Csa_7G145950 [Cucumis sativus]	[more]
gi\|659094497\|ref\|XP_008448091.1\|	1.1e-124	61.29	PREDICTED: polygalacturonase-like [Cucumis melo]	[more]
gi\|568880467\|ref\|XP_006493140.1\|	1.3e-101	52.67	PREDICTED: polygalacturonase-like [Citrus sinensis]	[more]
gi\|641832559\|gb\|KDO51591.1\|	3.7e-101	52.42	hypothetical protein CISIN_1g041993mg [Citrus sinensis]	[more]
gi\|734373884\|gb\|KHN20494.1\|	8.3e-101	54.35	Polygalacturonase [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0004650	polygalacturonase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR012334	Pectin_lyas_fold
IPR011050	Pectin_lyase_fold/virulence
IPR006626	PbH1
IPR000743	Glyco_hydro_28

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004650	polygalacturonase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G009050.1	Lsi03G009050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 152..375 score: 1.6
IPR000743	Glycoside hydrolase, family 28	PROSITE	PS00502	POLYGALACTURONASE	coord: 228..241 scor
IPR006626	Parallel beta-helix repeat	SMART	SM00710	pbh1	coord: 198..219 score: 740.0coord: 251..272 score: 1.6coord: 221..241 score: 1600.0coord: 281..302 score: 10000.0coord: 171..197 score: 2
IPR011050	Pectin lyase fold/virulence factor	unknown	SSF51126	Pectin lyase-like	coord: 50..389 score: 2.67
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 62..156 score: 6.3E-16coord: 157..378 score: 6.7
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 1..389 score: 1.5E
None	No IPR available	PANTHER	PTHR31375:SF2	POLYGALACTURONASE/PECTINASE	coord: 1..389 score: 1.5E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G009050	Watermelon (97103) v2	lsiwmbB246
Lsi03G009050	Wax gourd	lsiwgoB320
Lsi03G009050	Cucurbita maxima (Rimu)	cmalsiB482
Lsi03G009050	Cucurbita moschata (Rifu)	cmolsiB466
Lsi03G009050	Cucurbita pepo (Zucchini)	cpelsiB168
Lsi03G009050	Cucurbita pepo (Zucchini)	cpelsiB206
Lsi03G009050	Watermelon (Charleston Gray)	lsiwcgB211