Lsi03G004930.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G004930.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ribulose bisphosphate carboxylase large chain
Location	chr03 : 5657245 .. 5659579 (-)
Sequence length	375

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGTTGGATAACATGTAACAACTCAACCCATTGAATTTGAATATTGCTTTGAAATGTCTTTTGTGTAGCGCCGTATATTCCAAAAATGGTAAAGAAGTTCAAAGGAGAAAAAGAAAGAAAAAGCTTTTTATAGGTAATAAAGTGGTTTTCAAAAGCATTTTTATGGTGTGGTGGGGCCATTATTTTGAGAATATGGAGGCAAACCAATTTTCTGTTTGTTTCTTGGGAAAATTCTAGCCTAGGCATTTGGTGGGTGGCTGTGGATTTTGATTCCCACCTCTCTTTTTTTTTTTTTTTCCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTCTTTTCTTTTTTTTTTTATAATATATATTTTCGATGTTAATTTCTATATGGTCTCTAGATTTCAAAATGTTACATATTTAGTCTTTAAATTTTGAGTTTGGTTTCAATTTAGTCTTTAAGTTTTAAAATGTAACAATTTTATCACTGAGATTTGAGTCTTGTTTCAATTTGGATTCCTAAATTTAAGTATTATAACTTTTTCGTCTTATTAATTAATTTAAAAGAAATAAAAGAATTATAATTAACTAAGTTTCACTATTTTTCATCACTATTAGAATTAAATATAAAATTTCATTTCATAATTTTTTTTAAAAATTAATTCATAGACATTAACGTTAATGACTGAAATTGAGAATTTAATGAAAGTCGAGATTAAAAGTGTATATCTCGAGATCTAGTGCCCAACTTGAATCAAAACTCTAATCTCAAACGTAAAATTGTAACATTTTGAAACCTAGAGACTAAATTGAAACCAAACTCAAAACTTTAGTCCTCGTTTGGTAACCATTTTGTTTTTTATTTTTATTTTTGAAAATTAAGCTTATTTCCTCACATTTTTTTACCATGGATTACATCTTTTTTTAGTACACGAGTTGAATTCTTAGCTAAATACCAAAAACAAAAATATTTTTTTGCAAGCTACATTTTTTATTTTTCAAAATTTGGCTTGATTTTTTAAAAGATGGGTAAAAAGTAGATAAGAAAACAAGAAATTTAGGTATGAGAGGGGTGTTTGTAGACTTAATTTTTAAAAACTAAAAATAAAAAATCAAATGGTTACCAAACAAAGCCTTAAAGACTAAATAATGTATAACATTTTGAAACCCTAGGGACAAAATGGAAACTAGCTAGACCTAAAACCTCTAGACCAATTTTTTTATTTTTTTACTTCAAATATAATCCATCATACATATAAACCATCAAAGGTTGACCTAGTGTTAAATAAGAGACATGAGTTTAATAAAGGACTTTTTCTATTTTTCATATAGTTGCCAGAAGGAAAGAGTTTCAATTCATATTGGTCACCTACCTAAGATTTAATATCTTATAAGTTTTCTTTGACACCCAAAAATCATAAGATCAGGTTGTCCCGTGGTCCCAGACACTCATACATATCAAAAAAAAAAAAAAATCTCACTCACTGACTTTACTCACTCATTCACCTTGAAGGCAATCTCTTCCTTTTGATTTGCTTGACTCTTTTTGTCACATCCTTATGTCTTTCTTTTCTCTTTTTCTATGAGCTGATTCCATTTGGGTGGATATGATTTGCCTTTTCCAATTTAGCATCATCTTCTTTTTCAAAATATTTTGTGCCAATAATTCAATGTCCAAACTATTGTGTGCATATCCTTATTTTCTTTCATAGCTTACTCACATACGTGTCATTGAGAGCTTTCTTGTTCTTATAAGTGGGAGTTATGGTCAAAATTCAATTGAATTGAGACATCTTTTAATTTTTCCTGAATATGAAAACAAAAATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGGGAGTTCCACCTGAGGAAGCAGGGGCCGCCGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATGTAACTTTAACTTTTGTAGTTGCCAAATGTTTTATCTACAAATGGAAATTATAA

mRNA sequence

ATGTTGCTTACTCACATACGTGTCATTGAGAGCTTTCTTGTTCTTATAAGTGGGAGTTATGGTCAAAATTCAATTGAATTGAGACATCTTTTAATTTTTCCTGAATATGAAAACAAAAATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGGGAGTTCCACCTGAGGAAGCAGGGGCCGCCGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATGTAACTTTAACTTTTGTAGTTGCCAAATGTTTTATCTACAAATGGAAATTATAA

Coding sequence (CDS)

ATGTTGCTTACTCACATACGTGTCATTGAGAGCTTTCTTGTTCTTATAAGTGGGAGTTATGGTCAAAATTCAATTGAATTGAGACATCTTTTAATTTTTCCTGAATATGAAAACAAAAATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGGGAGTTCCACCTGAGGAAGCAGGGGCCGCCGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATGTAACTTTAACTTTTGTAGTTGCCAAATGTTTTATCTACAAATGGAAATTATAA

Protein sequence

MLLTHIRVIESFLVLISGSYGQNSIELRHLLIFPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVTLTFVVAKCFIYKWKL

Homology

[Close]

BLAST of Lsi03G004930.1 vs. Swiss-Prot
Match: RBL_CUCPE (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cucurbita pepo GN=rbcL PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 18  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 77

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 78  IEPVPGEENQYIAYV 92

[Close]

BLAST of Lsi03G004930.1 vs. Swiss-Prot
Match: RBL_CICIN (Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus GN=rbcL PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 27  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 86

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 87  IEPVPGEENQYIAYV 101

[Close]

BLAST of Lsi03G004930.1 vs. Swiss-Prot
Match: RBL_LACSA (Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa GN=rbcL PE=3 SV=2)

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 27  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 86

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 87  IEPVPGEENQYIAYV 101

[Close]

BLAST of Lsi03G004930.1 vs. Swiss-Prot
Match: RBL_ANTGA (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Anthocleista grandiflora GN=rbcL PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 18  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 77

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 78  IEPVPGEENQYIAYV 92

[Close]

BLAST of Lsi03G004930.1 vs. Swiss-Prot
Match: RBL_FLABI (Ribulose bisphosphate carboxylase large chain OS=Flaveria bidentis GN=rbcL PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.6e-37
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 27  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 86

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGE+NQYIAYV
Sbjct: 87  IEPVPGEDNQYIAYV 101

[Close]

BLAST of Lsi03G004930.1 vs. TrEMBL
Match: B2Y4U6_9ASTR (Ribulose bisphosphate carboxylase large chain OS=Hesperomannia arbuscula GN=rbcL PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.0e-36
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE KNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 27  PEYETKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 86

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 87  IEPVPGEENQYIAYV 101

[Close]

BLAST of Lsi03G004930.1 vs. TrEMBL
Match: U5IJC0_9ZZZZ (Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=unidentified PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-35
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 3   PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 62

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 63  IEPVPGEENQYIAYV 77

[Close]

BLAST of Lsi03G004930.1 vs. TrEMBL
Match: E9NFR8_9EUKA (Ribulose bisphosphate carboxylase large chain (Fragment) OS=uncultured eukaryote GN=rbcL PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-35
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 18  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 77

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 78  IEPVPGEENQYIAYV 92

[Close]

BLAST of Lsi03G004930.1 vs. TrEMBL
Match: A0A0R6LG88_9ASTR (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Athanasia microphylla GN=rbcL PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-35
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 18  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 77

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 78  IEPVPGEENQYIAYV 92

[Close]

BLAST of Lsi03G004930.1 vs. TrEMBL
Match: G0WZM7_9ASTR (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Tolpis umbellata GN=rbcL PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-35
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 12  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 71

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 72  IEPVPGEENQYIAYV 86

[Close]

BLAST of Lsi03G004930.1 vs. TAIR10
Match: ATCG00490.1 (ATCG00490.1 ribulose-bisphosphate carboxylases)

HSP 1 Score: 149.4 bits (376), Expect = 1.4e-36
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY 
Sbjct: 27  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYH 86

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEE Q+IAYV
Sbjct: 87  IEPVPGEETQFIAYV 101

[Close]

BLAST of Lsi03G004930.1 vs. NCBI nr
Match: gi|170664974|gb|ACB29074.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Hesperomannia arbuscula])

HSP 1 Score: 158.3 bits (399), Expect = 8.7e-36
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE KNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 27  PEYETKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 86

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 87  IEPVPGEENQYIAYV 101

[Close]

BLAST of Lsi03G004930.1 vs. NCBI nr
Match: gi|973529758|gb|ALX36882.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-35
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 4   PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 63

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 64  IEPVPGEENQYIAYV 78

[Close]

BLAST of Lsi03G004930.1 vs. NCBI nr
Match: gi|653602573|gb|AIC80885.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Saprosma ternatum])

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-35
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 19  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 78

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 79  IEPVPGEENQYIAYV 93

[Close]

BLAST of Lsi03G004930.1 vs. NCBI nr
Match: gi|404243970|emb|CCJ32333.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Picris hieracioides subsp. spinulosa])

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-35
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 3   PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 62

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 63  IEPVPGEENQYIAYV 77

[Close]

BLAST of Lsi03G004930.1 vs. NCBI nr
Match: gi|399139449|gb|AFP23497.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (plastid) [Melanoseris cyanea])

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-35
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 17  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 76

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 77  IEPVPGEENQYIAYV 91

The following BLAST results are available for this feature:

BLAST of Lsi03G004930.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBL_CUCPE	2.1e-37	97.33	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cucurbita pepo GN=rb...	[more]
RBL_CICIN	2.1e-37	97.33	Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus GN=rbcL PE=3 ...	[more]
RBL_LACSA	2.1e-37	97.33	Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa GN=rbcL PE=3 SV=...	[more]
RBL_ANTGA	2.1e-37	97.33	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Anthocleista grandif...	[more]
RBL_FLABI	4.6e-37	96.00	Ribulose bisphosphate carboxylase large chain OS=Flaveria bidentis GN=rbcL PE=3 ...	[more]

BLAST of Lsi03G004930.1 vs. TrEMBL


Match Name	E-value	Identity	Description
B2Y4U6_9ASTR	6.0e-36	98.67	Ribulose bisphosphate carboxylase large chain OS=Hesperomannia arbuscula GN=rbcL...	[more]
U5IJC0_9ZZZZ	2.3e-35	97.33	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=unid...	[more]
E9NFR8_9EUKA	2.3e-35	97.33	Ribulose bisphosphate carboxylase large chain (Fragment) OS=uncultured eukaryote...	[more]
A0A0R6LG88_9ASTR	2.3e-35	97.33	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Athanasia microphyll...	[more]
G0WZM7_9ASTR	2.3e-35	97.33	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Tolpis umbellata GN=...	[more]

BLAST of Lsi03G004930.1 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00490.1	1.4e-36	93.33	ATCG00490.1 ribulose-bisphosphate carboxylases	[more]

BLAST of Lsi03G004930.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|170664974\|gb\|ACB29074.1\|	8.7e-36	98.67	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Hes...	[more]
gi\|973529758\|gb\|ALX36882.1\|	3.3e-35	97.33	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl...	[more]
gi\|653602573\|gb\|AIC80885.1\|	3.3e-35	97.33	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl...	[more]
gi\|404243970\|emb\|CCJ32333.1\|	3.3e-35	97.33	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Picris h...	[more]
gi\|399139449\|gb\|AFP23497.1\|	3.3e-35	97.33	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (plastid)...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016984	ribulose-bisphosphate carboxylase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015977	carbon fixation

Vocabulary: **INTERPRO**
Term	Definition
IPR017443	RuBisCO_lsu_fd_N

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0019253	reductive pentose-phosphate cycle
cellular_component	GO:0009573	chloroplast ribulose bisphosphate carboxylase complex
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0004497	monooxygenase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi03G004930	Lsi03G004930	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G004930.1.CDS.2	Lsi03G004930.1.CDS.2	CDS
Lsi03G004930.1.CDS.1	Lsi03G004930.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi03G004930.1	Lsi03G004930.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	GENE3D	G3DSA:3.30.70.150		coord: 34..109 score: 7.4
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	PFAM	PF02788	RuBisCO_large_N	coord: 34..110 score: 1.1
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	unknown	SSF54966	RuBisCO, large subunit, small (N-terminal) domain	coord: 28..109 score: 9.16
None	No IPR available	PANTHER	PTHR23321	RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR	coord: 34..108 score: 1.0
None	No IPR available	PANTHER	PTHR23321:SF33	SUBFAMILY NOT NAMED	coord: 34..108 score: 1.0