Lsi03G004930 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G004930
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ribulose bisphosphate carboxylase large chain
Location	chr03 : 5657245 .. 5659579 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGTTGGATAACATGTAACAACTCAACCCATTGAATTTGAATATTGCTTTGAAATGTCTTTTGTGTAGCGCCGTATATTCCAAAAATGGTAAAGAAGTTCAAAGGAGAAAAAGAAAGAAAAAGCTTTTTATAGGTAATAAAGTGGTTTTCAAAAGCATTTTTATGGTGTGGTGGGGCCATTATTTTGAGAATATGGAGGCAAACCAATTTTCTGTTTGTTTCTTGGGAAAATTCTAGCCTAGGCATTTGGTGGGTGGCTGTGGATTTTGATTCCCACCTCTCTTTTTTTTTTTTTTTCCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTCTTTTCTTTTTTTTTTTATAATATATATTTTCGATGTTAATTTCTATATGGTCTCTAGATTTCAAAATGTTACATATTTAGTCTTTAAATTTTGAGTTTGGTTTCAATTTAGTCTTTAAGTTTTAAAATGTAACAATTTTATCACTGAGATTTGAGTCTTGTTTCAATTTGGATTCCTAAATTTAAGTATTATAACTTTTTCGTCTTATTAATTAATTTAAAAGAAATAAAAGAATTATAATTAACTAAGTTTCACTATTTTTCATCACTATTAGAATTAAATATAAAATTTCATTTCATAATTTTTTTTAAAAATTAATTCATAGACATTAACGTTAATGACTGAAATTGAGAATTTAATGAAAGTCGAGATTAAAAGTGTATATCTCGAGATCTAGTGCCCAACTTGAATCAAAACTCTAATCTCAAACGTAAAATTGTAACATTTTGAAACCTAGAGACTAAATTGAAACCAAACTCAAAACTTTAGTCCTCGTTTGGTAACCATTTTGTTTTTTATTTTTATTTTTGAAAATTAAGCTTATTTCCTCACATTTTTTTACCATGGATTACATCTTTTTTTAGTACACGAGTTGAATTCTTAGCTAAATACCAAAAACAAAAATATTTTTTTGCAAGCTACATTTTTTATTTTTCAAAATTTGGCTTGATTTTTTAAAAGATGGGTAAAAAGTAGATAAGAAAACAAGAAATTTAGGTATGAGAGGGGTGTTTGTAGACTTAATTTTTAAAAACTAAAAATAAAAAATCAAATGGTTACCAAACAAAGCCTTAAAGACTAAATAATGTATAACATTTTGAAACCCTAGGGACAAAATGGAAACTAGCTAGACCTAAAACCTCTAGACCAATTTTTTTATTTTTTTACTTCAAATATAATCCATCATACATATAAACCATCAAAGGTTGACCTAGTGTTAAATAAGAGACATGAGTTTAATAAAGGACTTTTTCTATTTTTCATATAGTTGCCAGAAGGAAAGAGTTTCAATTCATATTGGTCACCTACCTAAGATTTAATATCTTATAAGTTTTCTTTGACACCCAAAAATCATAAGATCAGGTTGTCCCGTGGTCCCAGACACTCATACATATCAAAAAAAAAAAAAAATCTCACTCACTGACTTTACTCACTCATTCACCTTGAAGGCAATCTCTTCCTTTTGATTTGCTTGACTCTTTTTGTCACATCCTTATGTCTTTCTTTTCTCTTTTTCTATGAGCTGATTCCATTTGGGTGGATATGATTTGCCTTTTCCAATTTAGCATCATCTTCTTTTTCAAAATATTTTGTGCCAATAATTCAATGTCCAAACTATTGTGTGCATATCCTTATTTTCTTTCATAGCTTACTCACATACGTGTCATTGAGAGCTTTCTTGTTCTTATAAGTGGGAGTTATGGTCAAAATTCAATTGAATTGAGACATCTTTTAATTTTTCCTGAATATGAAAACAAAAATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGGGAGTTCCACCTGAGGAAGCAGGGGCCGCCGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATGTAACTTTAACTTTTGTAGTTGCCAAATGTTTTATCTACAAATGGAAATTATAA

mRNA sequence

ATGTTGCTTACTCACATACGTGTCATTGAGAGCTTTCTTGTTCTTATAAGTGGGAGTTATGGTCAAAATTCAATTGAATTGAGACATCTTTTAATTTTTCCTGAATATGAAAACAAAAATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGGGAGTTCCACCTGAGGAAGCAGGGGCCGCCGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATGTAACTTTAACTTTTGTAGTTGCCAAATGTTTTATCTACAAATGGAAATTATAA

Coding sequence (CDS)

ATGTTGCTTACTCACATACGTGTCATTGAGAGCTTTCTTGTTCTTATAAGTGGGAGTTATGGTCAAAATTCAATTGAATTGAGACATCTTTTAATTTTTCCTGAATATGAAAACAAAAATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGGGAGTTCCACCTGAGGAAGCAGGGGCCGCCGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATGTAACTTTAACTTTTGTAGTTGCCAAATGTTTTATCTACAAATGGAAATTATAA

Protein sequence

MLLTHIRVIESFLVLISGSYGQNSIELRHLLIFPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVTLTFVVAKCFIYKWKL

Homology

[Close]

BLAST of Lsi03G004930 vs. Swiss-Prot
Match: RBL_CUCPE (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cucurbita pepo GN=rbcL PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 18  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 77

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 78  IEPVPGEENQYIAYV 92

[Close]

BLAST of Lsi03G004930 vs. Swiss-Prot
Match: RBL_CICIN (Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus GN=rbcL PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 27  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 86

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 87  IEPVPGEENQYIAYV 101

[Close]

BLAST of Lsi03G004930 vs. Swiss-Prot
Match: RBL_LACSA (Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa GN=rbcL PE=3 SV=2)

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 27  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 86

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 87  IEPVPGEENQYIAYV 101

[Close]

BLAST of Lsi03G004930 vs. Swiss-Prot
Match: RBL_ANTGA (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Anthocleista grandiflora GN=rbcL PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 18  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 77

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 78  IEPVPGEENQYIAYV 92

[Close]

BLAST of Lsi03G004930 vs. Swiss-Prot
Match: RBL_FLABI (Ribulose bisphosphate carboxylase large chain OS=Flaveria bidentis GN=rbcL PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.6e-37
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 27  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 86

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGE+NQYIAYV
Sbjct: 87  IEPVPGEDNQYIAYV 101

[Close]

BLAST of Lsi03G004930 vs. TrEMBL
Match: B2Y4U6_9ASTR (Ribulose bisphosphate carboxylase large chain OS=Hesperomannia arbuscula GN=rbcL PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.0e-36
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE KNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 27  PEYETKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 86

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 87  IEPVPGEENQYIAYV 101

[Close]

BLAST of Lsi03G004930 vs. TrEMBL
Match: U5IJC0_9ZZZZ (Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=unidentified PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-35
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 3   PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 62

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 63  IEPVPGEENQYIAYV 77

[Close]

BLAST of Lsi03G004930 vs. TrEMBL
Match: E9NFR8_9EUKA (Ribulose bisphosphate carboxylase large chain (Fragment) OS=uncultured eukaryote GN=rbcL PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-35
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 18  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 77

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 78  IEPVPGEENQYIAYV 92

[Close]

BLAST of Lsi03G004930 vs. TrEMBL
Match: A0A0R6LG88_9ASTR (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Athanasia microphylla GN=rbcL PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-35
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 18  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 77

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 78  IEPVPGEENQYIAYV 92

[Close]

BLAST of Lsi03G004930 vs. TrEMBL
Match: G0WZM7_9ASTR (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Tolpis umbellata GN=rbcL PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-35
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 12  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 71

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 72  IEPVPGEENQYIAYV 86

[Close]

BLAST of Lsi03G004930 vs. TAIR10
Match: ATCG00490.1 (ATCG00490.1 ribulose-bisphosphate carboxylases)

HSP 1 Score: 149.4 bits (376), Expect = 1.4e-36
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY 
Sbjct: 27  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYH 86

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEE Q+IAYV
Sbjct: 87  IEPVPGEETQFIAYV 101

[Close]

BLAST of Lsi03G004930 vs. NCBI nr
Match: gi|170664974|gb|ACB29074.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Hesperomannia arbuscula])

HSP 1 Score: 158.3 bits (399), Expect = 8.7e-36
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE KNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 27  PEYETKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 86

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 87  IEPVPGEENQYIAYV 101

[Close]

BLAST of Lsi03G004930 vs. NCBI nr
Match: gi|973529758|gb|ALX36882.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-35
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 4   PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 63

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 64  IEPVPGEENQYIAYV 78

[Close]

BLAST of Lsi03G004930 vs. NCBI nr
Match: gi|653602573|gb|AIC80885.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Saprosma ternatum])

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-35
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 19  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 78

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 79  IEPVPGEENQYIAYV 93

[Close]

BLAST of Lsi03G004930 vs. NCBI nr
Match: gi|404243970|emb|CCJ32333.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Picris hieracioides subsp. spinulosa])

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-35
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 3   PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 62

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 63  IEPVPGEENQYIAYV 77

[Close]

BLAST of Lsi03G004930 vs. NCBI nr
Match: gi|399139449|gb|AFP23497.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (plastid) [Melanoseris cyanea])

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-35
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 34  PEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 93
           PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG
Sbjct: 17  PEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG 76

Query: 94  IEPVPGEENQYIAYV 109
           IEPVPGEENQYIAYV
Sbjct: 77  IEPVPGEENQYIAYV 91

The following BLAST results are available for this feature:

BLAST of Lsi03G004930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBL_CUCPE	2.1e-37	97.33	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cucurbita pepo GN=rb...	[more]
RBL_CICIN	2.1e-37	97.33	Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus GN=rbcL PE=3 ...	[more]
RBL_LACSA	2.1e-37	97.33	Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa GN=rbcL PE=3 SV=...	[more]
RBL_ANTGA	2.1e-37	97.33	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Anthocleista grandif...	[more]
RBL_FLABI	4.6e-37	96.00	Ribulose bisphosphate carboxylase large chain OS=Flaveria bidentis GN=rbcL PE=3 ...	[more]

BLAST of Lsi03G004930 vs. TrEMBL


Match Name	E-value	Identity	Description
B2Y4U6_9ASTR	6.0e-36	98.67	Ribulose bisphosphate carboxylase large chain OS=Hesperomannia arbuscula GN=rbcL...	[more]
U5IJC0_9ZZZZ	2.3e-35	97.33	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=unid...	[more]
E9NFR8_9EUKA	2.3e-35	97.33	Ribulose bisphosphate carboxylase large chain (Fragment) OS=uncultured eukaryote...	[more]
A0A0R6LG88_9ASTR	2.3e-35	97.33	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Athanasia microphyll...	[more]
G0WZM7_9ASTR	2.3e-35	97.33	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Tolpis umbellata GN=...	[more]

BLAST of Lsi03G004930 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00490.1	1.4e-36	93.33	ATCG00490.1 ribulose-bisphosphate carboxylases	[more]

BLAST of Lsi03G004930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|170664974\|gb\|ACB29074.1\|	8.7e-36	98.67	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Hes...	[more]
gi\|973529758\|gb\|ALX36882.1\|	3.3e-35	97.33	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl...	[more]
gi\|653602573\|gb\|AIC80885.1\|	3.3e-35	97.33	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl...	[more]
gi\|404243970\|emb\|CCJ32333.1\|	3.3e-35	97.33	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Picris h...	[more]
gi\|399139449\|gb\|AFP23497.1\|	3.3e-35	97.33	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (plastid)...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016984	ribulose-bisphosphate carboxylase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015977	carbon fixation

Vocabulary: **INTERPRO**
Term	Definition
IPR017443	RuBisCO_lsu_fd_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0015977	carbon fixation
cellular_component	GO:0009573	chloroplast ribulose bisphosphate carboxylase complex
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G004930.1	Lsi03G004930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	GENE3D	G3DSA:3.30.70.150		coord: 34..109 score: 7.4
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	PFAM	PF02788	RuBisCO_large_N	coord: 34..110 score: 1.1
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	unknown	SSF54966	RuBisCO, large subunit, small (N-terminal) domain	coord: 28..109 score: 9.16
None	No IPR available	PANTHER	PTHR23321	RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR	coord: 34..108 score: 1.0
None	No IPR available	PANTHER	PTHR23321:SF33	SUBFAMILY NOT NAMED	coord: 34..108 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G004930	Bottle gourd (USVL1VR-Ls)	lsilsiB132
Lsi03G004930	Cucumber (Gy14) v1	cgylsiB367
Lsi03G004930	Cucumber (Gy14) v1	cgylsiB403
Lsi03G004930	Cucurbita maxima (Rimu)	cmalsiB116
Lsi03G004930	Cucurbita maxima (Rimu)	cmalsiB309
Lsi03G004930	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G004930	Cucurbita maxima (Rimu)	cmalsiB662
Lsi03G004930	Cucurbita moschata (Rifu)	cmolsiB103
Lsi03G004930	Cucurbita moschata (Rifu)	cmolsiB297
Lsi03G004930	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G004930	Cucurbita moschata (Rifu)	cmolsiB650
Lsi03G004930	Cucurbita pepo (Zucchini)	cpelsiB171
Lsi03G004930	Cucurbita pepo (Zucchini)	cpelsiB208
Lsi03G004930	Cucurbita pepo (Zucchini)	cpelsiB348
Lsi03G004930	Cucurbita pepo (Zucchini)	cpelsiB454
Lsi03G004930	Cucurbita pepo (Zucchini)	cpelsiB543
Lsi03G004930	Wild cucumber (PI 183967)	cpilsiB188
Lsi03G004930	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G004930	Cucumber (Chinese Long) v2	culsiB189
Lsi03G004930	Cucumber (Chinese Long) v2	culsiB522
Lsi03G004930	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G004930	Melon (DHL92) v3.5.1	lsimeB267
Lsi03G004930	Watermelon (Charleston Gray)	lsiwcgB242
Lsi03G004930	Watermelon (Charleston Gray)	lsiwcgB243
Lsi03G004930	Watermelon (Charleston Gray)	lsiwcgB233
Lsi03G004930	Watermelon (97103) v1	lsiwmB255
Lsi03G004930	Watermelon (97103) v1	lsiwmB268
Lsi03G004930	Cucumber (Gy14) v2	cgyblsiB103
Lsi03G004930	Cucumber (Gy14) v2	cgyblsiB173
Lsi03G004930	Cucumber (Gy14) v2	cgyblsiB488
Lsi03G004930	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G004930	Melon (DHL92) v3.6.1	lsimedB271
Lsi03G004930	Melon (DHL92) v3.6.1	lsimedB280
Lsi03G004930	Melon (DHL92) v3.6.1	lsimedB285
Lsi03G004930	Silver-seed gourd	carlsiB187
Lsi03G004930	Silver-seed gourd	carlsiB342
Lsi03G004930	Silver-seed gourd	carlsiB736
Lsi03G004930	Cucumber (Chinese Long) v3	cuclsiB205
Lsi03G004930	Cucumber (Chinese Long) v3	cuclsiB300
Lsi03G004930	Cucumber (Chinese Long) v3	cuclsiB555
Lsi03G004930	Watermelon (97103) v2	lsiwmbB226
Lsi03G004930	Watermelon (97103) v2	lsiwmbB236
Lsi03G004930	Watermelon (97103) v2	lsiwmbB244
Lsi03G004930	Wax gourd	lsiwgoB316
Lsi03G004930	Wax gourd	lsiwgoB314
Lsi03G004930	Wax gourd	lsiwgoB323