Lsi02G023840.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G023840.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Desiccation-related PCC13-62
Location	chr02 : 30523384 .. 30524650 (+)
Sequence length	840

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATGAAAGTTGCATCATTCTTTTGGACATGGTTTCTTTTTGTGGTTTACTCGAGTCGAGTTGTAGTATGTAATAATATCATCGATCAATGTCAATCAATGGTAGCACCTGACGTTGAAATTTTTCGATTTGCTTCGAATTTTGAGTACCTTGAAGGAGAGTTCTACTTGAATAGTGCCCTTGGAAGAGGGATTGACTCCATTAATCCAAGTTTGGCATTTGGAGGACCACCTCCTATTGGTGCTCAAAAGGCTAATTTAGATCATGTCGTTAGTAACATCATTAAAGAATTTGGATATGAAGAGATGGGACAACTAAAGTAAATCATACATAAATCTATGTGTTCATTCAATACTGTTTTACGTTTTTCTGTTTATCTTTATTTGTAGATTTCTTAATTAACTTATATATTTGGTTTTATAAAGACCAATATTATTTCTTAGTTTTTTTTTTTTTTTTTTTGAATTTCAGAGTTGTAATTAAGGCAGCTGGTGGAAGTGGTATTAAAAGGCCATTGTTGAATCTAAGTAAAGAAGTATTTTCAGATATATTTGATAAAGCAGTTGGGTTCAAGCTGGAACCAAGATTTGATCCTTATGCCAATTCCACCAATTTTCTACTTGCTGCCAATATGCTCCCTTACACTGGACTTGTTGGCCTTGTTGGAGCAACCCCTTTGTTTTTCTTTCTCCAATCTCGCAAGGTAAAGGACAATGAGTAACGATTTTGTTTTTAGTTTCTCATCATTTTTATACTATGCTTTTCACTCCTGTGCTCAGCCTATTCAATTGTTTGATTAGAGATGGATTACTCTAAGTTTAGTGTTTAAATTTAAATTTAAAGTTTAGTTGCATGCAGTAAATAATAACATTTTCTTTGCAGCTAGCGGCCTCGCTGCTCGGTGCAGAGTCTGGGCAAAATGCGGTTATACGAACGTTGTTGTACCAGAGGGCCAACGAGATTGTGGTTCCATATAACCTAACGGTGGCAGAGTTCACCAACCTCACCTCGACGCTGGCGAACCAGCTTGGGAAATGCGGGCTCAAAGACGAAGGGATTATTGTCCCTCAGTCGCTCGGGGCGGAGAATCAAACCGAGAGCAACGTTCTTGCGACCAACGTTAACTCCGTTTCGTATTCTCGAACAGTACAAGAAATCTTACGCATACTGTATGCAAGTGGTAGTGAAAGTAAAGCTGGTGCGTTTTTTCCAGAGGGTGCTAATGGTTTGATTGCAAGAAGCTTCCTTGGACCCAATATATGA

mRNA sequence

ATGAGGATGAAAGTTGCATCATTCTTTTGGACATGGTTTCTTTTTGTGGTTTACTCGAGTCGAGTTGTAGTATGTAATAATATCATCGATCAATGTCAATCAATGGTAGCACCTGACGTTGAAATTTTTCGATTTGCTTCGAATTTTGAGTACCTTGAAGGAGAGTTCTACTTGAATAGTGCCCTTGGAAGAGGGATTGACTCCATTAATCCAAGTTTGGCATTTGGAGGACCACCTCCTATTGCTGGTGGAAGTGGTATTAAAAGGCCATTGTTGAATCTAAGTAAAGAAGTATTTTCAGATATATTTGATAAAGCAGTTGGGTTCAAGCTGGAACCAAGATTTGATCCTTATGCCAATTCCACCAATTTTCTACTTGCTGCCAATATGCTCCCTTACACTGGACTTGTTGGCCTTGTTGGAGCAACCCCTTTGTTTTTCTTTCTCCAATCTCGCAAGCTAGCGGCCTCGCTGCTCGGTGCAGAGTCTGGGCAAAATGCGGTTATACGAACGTTGTTGTACCAGAGGGCCAACGAGATTGTGGTTCCATATAACCTAACGGTGGCAGAGTTCACCAACCTCACCTCGACGCTGGCGAACCAGCTTGGGAAATGCGGGCTCAAAGACGAAGGGATTATTGTCCCTCAGTCGCTCGGGGCGGAGAATCAAACCGAGAGCAACGTTCTTGCGACCAACGTTAACTCCGTTTCGTATTCTCGAACAGTACAAGAAATCTTACGCATACTGTATGCAAGTGGTAGTGAAAGTAAAGCTGGTGCGTTTTTTCCAGAGGGTGCTAATGGTTTGATTGCAAGAAGCTTCCTTGGACCCAATATATGA

Coding sequence (CDS)

ATGAGGATGAAAGTTGCATCATTCTTTTGGACATGGTTTCTTTTTGTGGTTTACTCGAGTCGAGTTGTAGTATGTAATAATATCATCGATCAATGTCAATCAATGGTAGCACCTGACGTTGAAATTTTTCGATTTGCTTCGAATTTTGAGTACCTTGAAGGAGAGTTCTACTTGAATAGTGCCCTTGGAAGAGGGATTGACTCCATTAATCCAAGTTTGGCATTTGGAGGACCACCTCCTATTGCTGGTGGAAGTGGTATTAAAAGGCCATTGTTGAATCTAAGTAAAGAAGTATTTTCAGATATATTTGATAAAGCAGTTGGGTTCAAGCTGGAACCAAGATTTGATCCTTATGCCAATTCCACCAATTTTCTACTTGCTGCCAATATGCTCCCTTACACTGGACTTGTTGGCCTTGTTGGAGCAACCCCTTTGTTTTTCTTTCTCCAATCTCGCAAGCTAGCGGCCTCGCTGCTCGGTGCAGAGTCTGGGCAAAATGCGGTTATACGAACGTTGTTGTACCAGAGGGCCAACGAGATTGTGGTTCCATATAACCTAACGGTGGCAGAGTTCACCAACCTCACCTCGACGCTGGCGAACCAGCTTGGGAAATGCGGGCTCAAAGACGAAGGGATTATTGTCCCTCAGTCGCTCGGGGCGGAGAATCAAACCGAGAGCAACGTTCTTGCGACCAACGTTAACTCCGTTTCGTATTCTCGAACAGTACAAGAAATCTTACGCATACTGTATGCAAGTGGTAGTGAAAGTAAAGCTGGTGCGTTTTTTCCAGAGGGTGCTAATGGTTTGATTGCAAGAAGCTTCCTTGGACCCAATATATGA

Protein sequence

MRMKVASFFWTWFLFVVYSSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLNSALGRGIDSINPSLAFGGPPPIAGGSGIKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFFFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGLKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGANGLIARSFLGPNI

Homology

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BLAST of Lsi02G023840.1 vs. Swiss-Prot
Match: DRPE_CRAPL (Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.5e-48
Identity = 111/260 (42.69%), Postives = 142/260 (54.62%), Query Frame = 1


Query: 39  DVEIFRFASNFEYLEGEFYLNSALGRGIDSINPSLAFGGPPPI----------------- 98
           DV +  F  N E LE EF+  +A G+GID + P LA GGP PI                 
Sbjct: 39  DVSLLEFPLNLELLEAEFFAWAAFGKGIDELEPELAKGGPSPIGVQKANLSPFIRDIIAQ 98

Query: 99  -------------AGGSGIKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAA 158
                        +   G  RPLL+LS + F+ + D A G  L+P FDPYAN  N+LLA 
Sbjct: 99  FAYQEFGHVRAIQSSVEGFPRPLLDLSAKSFATVMDSAFGKTLKPPFDPYANDINYLLAC 158

Query: 159 NMLPYTGLVGLVGATPLFFFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTV 218
            ++PY GL G VGA P      SRKL A LL  E+GQ+A+IR LLY+RA + V PY +TV
Sbjct: 159 YVVPYVGLTGYVGANPKLESPVSRKLVAGLLAVEAGQDAIIRALLYERATDKVEPYGITV 218

Query: 219 AEFTNLTSTLANQLGKCGLKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRI 269
           AEFTN  S L N+LG  G+KD G+IV   LGAE +   NVLA + NS+++ RT +  L  
Sbjct: 219 AEFTNKISELRNKLGDKGVKDLGLIVEPELGAEGKISGNVLAGDKNSLAFPRTPERCLGS 278

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BLAST of Lsi02G023840.1 vs. TrEMBL
Match: A0A0A0K965_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G396330 PE=4 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 1.9e-122
Identity = 233/308 (75.65%), Postives = 253/308 (82.14%), Query Frame = 1


Query: 1   MRMKVASF-FWTWFLFVVYSSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLN 60
           MRMK AS  FW+WF F+VY SRVVVCNNIIDQCQ MVAPD+E+ RFASNFEYLEGEF+L+
Sbjct: 9   MRMKNASIIFWSWFFFLVYLSRVVVCNNIIDQCQPMVAPDIEVVRFASNFEYLEGEFFLH 68

Query: 61  SALGRGIDSINPSLAFGGPPPI--------------------------------AGGSGI 120
            ALG GIDSINP+LAFGGPPPI                                AGG GI
Sbjct: 69  CALGEGIDSINPNLAFGGPPPIGAQKANLDPVTANIAKEFGYQEIGQLRSVIEAAGGRGI 128

Query: 121 KRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFF 180
           KRPLLNLSKEVFSDIFD+A+GFKLEPRFDPY+NS NFLLAANM PYTGLVGLVGATPL  
Sbjct: 129 KRPLLNLSKEVFSDIFDEAIGFKLEPRFDPYSNSINFLLAANMFPYTGLVGLVGATPLLL 188

Query: 181 FLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGL 240
             QSRKLAASLLGAESGQNAVIRTLLYQRANE V PYN+TVAEFTNLTSTLAN+LGKCGL
Sbjct: 189 LPQSRKLAASLLGAESGQNAVIRTLLYQRANETVDPYNITVAEFTNLTSTLANKLGKCGL 248

Query: 241 KDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGAN 276
           +DEGI+VP SLGAEN+TESN+LA +VNS SYSRTV+E+LRILY SGSESK GAFFP+GAN
Sbjct: 249 RDEGIMVPLSLGAENRTESNILAADVNSRSYSRTVRELLRILYGSGSESKVGAFFPKGAN 308

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BLAST of Lsi02G023840.1 vs. TrEMBL
Match: A0A059A7F3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03461 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 2.1e-73
Identity = 152/296 (51.35%), Postives = 196/296 (66.22%), Query Frame = 1


Query: 10  WTWFLFVVYSSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLNSALGRGIDSI 69
           +++FL ++  S    C+    +C+ + A DV+  +FA N E+LE EF+L  +LG+G+DSI
Sbjct: 7   FSFFLLLLLLSHKASCD---PRCEPIKASDVDRVQFAMNLEFLEAEFFLRGSLGQGLDSI 66

Query: 70  NPSLAFGGPPPIAGGS------------------------------GIKRPLLNLSKEVF 129
            P LA GGPPP+ G                                GI+RPLLNLS + F
Sbjct: 67  APYLAQGGPPPVGGAKADLDPITRRIIEEFGYQEVGHLRAIYTRVGGIRRPLLNLSAQNF 126

Query: 130 SDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFFFLQSRKLAASLL 189
             +FD+AVG +L+P F+PY N+ N+LLA+ ++PY GLVG VG  P      S+ L ASLL
Sbjct: 127 ETLFDRAVGRQLQPPFNPYGNTVNYLLASYVIPYVGLVGYVGTIPFLESYNSKSLVASLL 186

Query: 190 GAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGLKDEGIIVPQSLG 249
           G ESGQ+AV+RTLLY+RA+E V PYN+TVAEFT   S L N+L  CGLKDEGI+VP+ LG
Sbjct: 187 GVESGQDAVLRTLLYERADEKVEPYNMTVAEFTGHLSRLRNELAMCGLKDEGIMVPKELG 246

Query: 250 AENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGANGLIARSFL 276
           AEN+T SNVL+ +V SVSYSRT  EILRI+Y SGSE K G F+PEG NG IA+SFL
Sbjct: 247 AENRTTSNVLSADVYSVSYSRTPPEILRIIYNSGSEYKPGGFYPEGGNGRIAQSFL 299

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BLAST of Lsi02G023840.1 vs. TrEMBL
Match: V4TVF4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021291mg PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.2e-70
Identity = 141/269 (52.42%), Postives = 181/269 (67.29%), Query Frame = 1


Query: 37  APDVEIFRFASNFEYLEGEFYLNSALGRGIDSINPSLAFGGPPPIAGGS----------- 96
           A D ++ + A N E+LE EF+LN ALGRG+DSI P +A GGPPP                
Sbjct: 38  ANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRII 97

Query: 97  -------------------GIKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLL 156
                              G  RP ++LS++ F++IFD+AVG+KL P FDPY+N+ N+LL
Sbjct: 98  EEFGYQEIGHLRAIVTTVGGFARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLL 157

Query: 157 AANMLPYTGLVGLVGATPLFFFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNL 216
           A+ ++PY GLVG VG  P      SR L A LLG ESGQ+AVIRTLLY+RA++IVVPY +
Sbjct: 158 ASYVIPYVGLVGYVGTIPNLVNCTSRSLVAGLLGVESGQDAVIRTLLYERADQIVVPYKM 217

Query: 217 TVAEFTNLTSTLANQLGKCGLKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEIL 276
           TVAEFT+  S L N+LGK G KDEG+ VP+ LGAEN+T+SN+L+ N NS+SYSRT  EIL
Sbjct: 218 TVAEFTDRISALRNRLGKRGNKDEGLRVPRRLGAENRTDSNILSANANSLSYSRTPPEIL 277

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BLAST of Lsi02G023840.1 vs. TrEMBL
Match: B9GGY2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s38900g PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 6.5e-70
Identity = 146/303 (48.18%), Postives = 193/303 (63.70%), Query Frame = 1


Query: 3   MKVASFFWTWFLFVVYSSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLNSAL 62
           M    FF T  L +V S  + V  +    C  + A D ++ +F  N E+LE EF+LN AL
Sbjct: 1   MATLYFFSTLVLTIVVSVPINVLGSAY--CGPVEAIDKDLVQFPLNLEFLEAEFFLNGAL 60

Query: 63  GRGIDSINPSLAFGGPPPIAGGS------------------------------GIKRPLL 122
           G G+D+  P  A GGPPPI                                  G+ RPL 
Sbjct: 61  GLGLDAFEPGFAAGGPPPIGAQKANLDPVTRRIIEEFGYQEVGHLRAIITTVGGVPRPLY 120

Query: 123 NLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFFFLQSR 182
           +LS E F+ +FDKAVG+KL+P F+PY+N+ N+LLA+  +PY GLVG VG  P      SR
Sbjct: 121 DLSPEAFAQLFDKAVGYKLDPPFNPYSNTVNYLLASYAIPYVGLVGYVGTIPHLANYTSR 180

Query: 183 KLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGLKDEGI 242
           +L ASLLG ESGQ+AVIRTLLY++A+E V+PY++TVAEFTN  S + N+L  CG++DEG+
Sbjct: 181 RLVASLLGVESGQDAVIRTLLYEKADEKVLPYDITVAEFTNAISGIRNELAMCGIRDEGL 240

Query: 243 IVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGANGLIAR 276
           IVP +LGAEN+TESN+L+ + NS+SY+RT Q+ILRI+Y +GSE   G F P G +G IAR
Sbjct: 241 IVPLNLGAENRTESNILSADTNSLSYARTPQQILRIIYGTGSEYMPGGFLPRGGSGKIAR 300

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BLAST of Lsi02G023840.1 vs. TrEMBL
Match: M5W3K3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016740mg PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 6.5e-70
Identity = 144/267 (53.93%), Postives = 181/267 (67.79%), Query Frame = 1


Query: 39  DVEIFRFASNFEYLEGEFYLNSALGRGIDSINPSLAFGGPPPIAGGS------------- 98
           D ++ +FA N E+LE EF+L  ALG G+D+I+P+LA GGPPPI G               
Sbjct: 30  DTDLIQFALNLEFLEAEFFLYGALGEGLDAISPNLALGGPPPIGGHKANLNPLVAPIIQE 89

Query: 99  -----------------GIKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAA 158
                            G  RPLLNLS+E F+ +FD+A GF L P FDPYANS N+LLA+
Sbjct: 90  FGYQEVGHLRAIITTIGGFPRPLLNLSRENFAALFDQAAGFPLTPPFDPYANSVNYLLAS 149

Query: 159 NMLPYTGLVGLVGATPLFFFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTV 218
             +PY GLVG VG  P      +R+L ASLLG E+GQ+AVIR LLY+ A+  V PY LTV
Sbjct: 150 YAIPYVGLVGYVGTIPNLTEPTNRRLVASLLGVEAGQDAVIRALLYKMAHWKVFPYRLTV 209

Query: 219 AEFTNLTSTLANQLGKCGLKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRI 276
           A+FTNL S L N+LG CG+KDEGIIVP++LGAEN+T SNVL+ +++S+SY+RT  EILRI
Sbjct: 210 ADFTNLISGLRNKLGGCGIKDEGIIVPETLGAENRTCSNVLSADLDSLSYARTQPEILRI 269

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BLAST of Lsi02G023840.1 vs. TAIR10
Match: AT3G62730.1 (AT3G62730.1 unknown protein)

HSP 1 Score: 246.9 bits (629), Expect = 1.5e-65
Identity = 134/270 (49.63%), Postives = 167/270 (61.85%), Query Frame = 1


Query: 37  APDVEIFRFASNFEYLEGEFYLNSALGRGIDSINPSLAFGGPPP---------------- 96
           A DV+   FA N E+ E EF+L  A G+G+D+ N +LA GGPPP                
Sbjct: 32  ASDVDRVHFAMNLEFTEAEFFLKGATGKGLDAYNATLAKGGPPPIGAKKANLDPITNRII 91

Query: 97  --------------IAGGSGIKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLL 156
                              GI RPL+NL++E F+   D+AVG K  PRFDPYANS N+LL
Sbjct: 92  EEFGYQEIGHLRAITDMTGGIPRPLINLTRENFAVFMDRAVGRKSNPRFDPYANSLNYLL 151

Query: 157 AANMLPYTGLVGLVGATPLFFFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPY-N 216
           A+  +PY GL G VG  P   +   +KL A LLG ESGQ+AVIRTLLY+R NE V  Y  
Sbjct: 152 ASYYIPYVGLTGYVGTIPYLVYFNIKKLVAGLLGVESGQDAVIRTLLYERQNEKVEEYGG 211

Query: 217 LTVAEFTNLTSTLANQLGKCGLKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEI 276
           +TVAE TN  S L N+LG CG+KDEG+ VP  LGAEN+T SN+L+ +  S+SY RT QEI
Sbjct: 212 VTVAELTNEISNLRNELGMCGIKDEGLCVPLWLGAENRTTSNILSADPYSLSYDRTAQEI 271

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BLAST of Lsi02G023840.1 vs. TAIR10
Match: AT1G47980.1 (AT1G47980.1 unknown protein)

HSP 1 Score: 234.6 bits (597), Expect = 7.5e-62
Identity = 139/309 (44.98%), Postives = 178/309 (57.61%), Query Frame = 1


Query: 2   RMKVASFFWTWFLFVVYSSRVVVC-----NNIIDQCQSMVAPDVEIFRFASNFEYLEGEF 61
           R  + S    +F F  +  +V  C      N  DQ       D ++  F  N EYLE EF
Sbjct: 8   RSLLVSMVLVFFFFNFHHLQVTSCPDQATTNCTDQ-------DRKLLEFPLNLEYLEAEF 67

Query: 62  YLNSALGRGIDSINPSLAFGGPPPIAGGS-----------------------GIK----- 121
           +L  ALG G+D + P+L  GGP PI                            IK     
Sbjct: 68  FLFGALGLGLDKVAPNLTMGGPSPIGAQKANLDPLTRDIILQFAWQEVGHLRAIKKTVKG 127

Query: 122 --RPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLF 181
             RP L+LSK+ F+ + DKA G K  P F+PYANS N+L+A+ ++PY GL G VGA P  
Sbjct: 128 FARPQLDLSKKAFAKVMDKAFGVKFVPPFNPYANSYNYLIASYLVPYVGLTGYVGANPKL 187

Query: 182 FFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCG 241
               SRKL A LLG ESGQ+AVIR +LY RA  IV PY +TVA FT+  S L N+LGK G
Sbjct: 188 QCPASRKLVAGLLGVESGQDAVIRGMLYARAAHIVYPYGVTVAAFTDKISDLRNKLGKAG 247

Query: 242 LKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGA 276
           +KDEG+IVP+ +GAE Q   NVL  N  S+S+ RT +EILRI+Y SG+ES  G F+P+GA
Sbjct: 248 VKDEGLIVPKFMGAEGQVIGNVLVGNELSLSFDRTPEEILRIVYGSGNESVPGGFYPKGA 307

[Close]

BLAST of Lsi02G023840.1 vs. NCBI nr
Match: gi|449436521|ref|XP_004136041.1| (PREDICTED: desiccation-related protein PCC13-62 [Cucumis sativus])

HSP 1 Score: 446.8 bits (1148), Expect = 2.7e-122
Identity = 233/308 (75.65%), Postives = 253/308 (82.14%), Query Frame = 1


Query: 1   MRMKVASF-FWTWFLFVVYSSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLN 60
           MRMK AS  FW+WF F+VY SRVVVCNNIIDQCQ MVAPD+E+ RFASNFEYLEGEF+L+
Sbjct: 9   MRMKNASIIFWSWFFFLVYLSRVVVCNNIIDQCQPMVAPDIEVVRFASNFEYLEGEFFLH 68

Query: 61  SALGRGIDSINPSLAFGGPPPI--------------------------------AGGSGI 120
            ALG GIDSINP+LAFGGPPPI                                AGG GI
Sbjct: 69  CALGEGIDSINPNLAFGGPPPIGAQKANLDPVTANIAKEFGYQEIGQLRSVIEAAGGRGI 128

Query: 121 KRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFF 180
           KRPLLNLSKEVFSDIFD+A+GFKLEPRFDPY+NS NFLLAANM PYTGLVGLVGATPL  
Sbjct: 129 KRPLLNLSKEVFSDIFDEAIGFKLEPRFDPYSNSINFLLAANMFPYTGLVGLVGATPLLL 188

Query: 181 FLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGL 240
             QSRKLAASLLGAESGQNAVIRTLLYQRANE V PYN+TVAEFTNLTSTLAN+LGKCGL
Sbjct: 189 LPQSRKLAASLLGAESGQNAVIRTLLYQRANETVDPYNITVAEFTNLTSTLANKLGKCGL 248

Query: 241 KDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGAN 276
           +DEGI+VP SLGAEN+TESN+LA +VNS SYSRTV+E+LRILY SGSESK GAFFP+GAN
Sbjct: 249 RDEGIMVPLSLGAENRTESNILAADVNSRSYSRTVRELLRILYGSGSESKVGAFFPKGAN 308

[Close]

BLAST of Lsi02G023840.1 vs. NCBI nr
Match: gi|659101432|ref|XP_008451603.1| (PREDICTED: desiccation-related protein PCC13-62-like [Cucumis melo])

HSP 1 Score: 441.8 bits (1135), Expect = 8.8e-121
Identity = 235/314 (74.84%), Postives = 256/314 (81.53%), Query Frame = 1


Query: 1   MRMKVASF-FWTWFLFVVYSS-RVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYL 60
           MRMK AS  FW WF F+VYSS RVVVCNNIIDQCQ MVAPD+E+ RFASNFEYLEGEF+L
Sbjct: 1   MRMKNASIIFWPWFFFMVYSSSRVVVCNNIIDQCQPMVAPDIEVVRFASNFEYLEGEFFL 60

Query: 61  NSALGRGIDSINPSLAFGGPPPI--------------------------------AGGSG 120
           +SALG+GIDSINP+LAFGGPPPI                                AGG G
Sbjct: 61  HSALGKGIDSINPNLAFGGPPPIGAQKANLDHVTAKMAEEFGNQEIGQLRAVIEAAGGRG 120

Query: 121 IKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLF 180
           IKRPLLNLSKEVFSDIFDKA+GFKL+PRFDPY+NS NFLLAAN+ PYTGLVGLVGATPL 
Sbjct: 121 IKRPLLNLSKEVFSDIFDKAIGFKLKPRFDPYSNSINFLLAANLFPYTGLVGLVGATPLL 180

Query: 181 FFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCG 240
              QSRKLAASLLGAESGQNAVIRTLLYQRANE V PYN+TVAEFTN TSTLAN+L  CG
Sbjct: 181 LLPQSRKLAASLLGAESGQNAVIRTLLYQRANETVHPYNITVAEFTNRTSTLANKLANCG 240

Query: 241 LKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGA 280
           LKDEGIIVP+SLGAEN+TESN+LA +V S SYSRTV+E+LRILYASGSESK GAFFP+GA
Sbjct: 241 LKDEGIIVPRSLGAENRTESNILAADVYSRSYSRTVRELLRILYASGSESKVGAFFPKGA 300

[Close]

BLAST of Lsi02G023840.1 vs. NCBI nr
Match: gi|702504278|ref|XP_010039275.1| (PREDICTED: desiccation-related protein PCC13-62-like [Eucalyptus grandis])

HSP 1 Score: 283.9 bits (725), Expect = 3.1e-73
Identity = 152/296 (51.35%), Postives = 196/296 (66.22%), Query Frame = 1


Query: 10  WTWFLFVVYSSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLNSALGRGIDSI 69
           +++FL ++  S    C+    +C+ + A DV+  +FA N E+LE EF+L  +LG+G+DSI
Sbjct: 7   FSFFLLLLLLSHKASCD---PRCEPIKASDVDRVQFAMNLEFLEAEFFLRGSLGQGLDSI 66

Query: 70  NPSLAFGGPPPIAGGS------------------------------GIKRPLLNLSKEVF 129
            P LA GGPPP+ G                                GI+RPLLNLS + F
Sbjct: 67  APYLAQGGPPPVGGAKADLDPITRRIIEEFGYQEVGHLRAIYTRVGGIRRPLLNLSAQNF 126

Query: 130 SDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFFFLQSRKLAASLL 189
             +FD+AVG +L+P F+PY N+ N+LLA+ ++PY GLVG VG  P      S+ L ASLL
Sbjct: 127 ETLFDRAVGRQLQPPFNPYGNTVNYLLASYVIPYVGLVGYVGTIPFLESYNSKSLVASLL 186

Query: 190 GAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGLKDEGIIVPQSLG 249
           G ESGQ+AV+RTLLY+RA+E V PYN+TVAEFT   S L N+L  CGLKDEGI+VP+ LG
Sbjct: 187 GVESGQDAVLRTLLYERADEKVEPYNMTVAEFTGHLSRLRNELAMCGLKDEGIMVPKELG 246

Query: 250 AENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGANGLIARSFL 276
           AEN+T SNVL+ +V SVSYSRT  EILRI+Y SGSE K G F+PEG NG IA+SFL
Sbjct: 247 AENRTTSNVLSADVYSVSYSRTPPEILRIIYNSGSEYKPGGFYPEGGNGRIAQSFL 299

[Close]

BLAST of Lsi02G023840.1 vs. NCBI nr
Match: gi|743904421|ref|XP_011045583.1| (PREDICTED: desiccation-related protein PCC13-62 [Populus euphratica])

HSP 1 Score: 278.5 bits (711), Expect = 1.3e-71
Identity = 150/303 (49.50%), Postives = 192/303 (63.37%), Query Frame = 1


Query: 3   MKVASFFWTWFLFVVYSSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLNSAL 62
           M    FF T  L +V S  + V  +    C  + A D ++ +F  N E+LE E +LN AL
Sbjct: 1   MATLYFFSTLVLTIVVSVPINVLGSAY--CGPVEANDKDLIQFPLNLEFLEAELFLNGAL 60

Query: 63  GRGIDSINPSLAFGGPPPIAG------------------------------GSGIKRPLL 122
           G G+D+I P  A GGPPPI                                  GI RPL 
Sbjct: 61  GHGLDAIEPGFAAGGPPPIGALKANLDPVTRRIIEEFGYQEVGHLRAIITTVGGIPRPLY 120

Query: 123 NLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFFFLQSR 182
           +LS E F+ +FDKAVG+KL P F+PY+N+ N+LLA+  +PY GLVG VG  P      SR
Sbjct: 121 DLSPEAFAQLFDKAVGYKLNPPFNPYSNTVNYLLASYAIPYVGLVGYVGTIPYLANYTSR 180

Query: 183 KLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGLKDEGI 242
           +L ASLLG ESGQ+AVIRTLLY++A+E V+PYN+TVAEFTN  S L N+L  CG++DEG+
Sbjct: 181 RLVASLLGVESGQDAVIRTLLYEKADEKVLPYNITVAEFTNAISCLRNELAMCGIRDEGL 240

Query: 243 IVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGANGLIAR 276
           IVP  LGAEN+TESN+L+ + NS+SY+RT Q+ILRI+Y +GSE + G F P G NG IAR
Sbjct: 241 IVPLHLGAENRTESNILSADTNSLSYARTQQQILRIIYGTGSEYRPGGFLPRGGNGKIAR 300

[Close]

BLAST of Lsi02G023840.1 vs. NCBI nr
Match: gi|567903588|ref|XP_006444282.1| (hypothetical protein CICLE_v10021291mg [Citrus clementina])

HSP 1 Score: 273.9 bits (699), Expect = 3.2e-70
Identity = 141/269 (52.42%), Postives = 181/269 (67.29%), Query Frame = 1


Query: 37  APDVEIFRFASNFEYLEGEFYLNSALGRGIDSINPSLAFGGPPPIAGGS----------- 96
           A D ++ + A N E+LE EF+LN ALGRG+DSI P +A GGPPP                
Sbjct: 38  ANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRII 97

Query: 97  -------------------GIKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLL 156
                              G  RP ++LS++ F++IFD+AVG+KL P FDPY+N+ N+LL
Sbjct: 98  EEFGYQEIGHLRAIVTTVGGFARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLL 157

Query: 157 AANMLPYTGLVGLVGATPLFFFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNL 216
           A+ ++PY GLVG VG  P      SR L A LLG ESGQ+AVIRTLLY+RA++IVVPY +
Sbjct: 158 ASYVIPYVGLVGYVGTIPNLVNCTSRSLVAGLLGVESGQDAVIRTLLYERADQIVVPYKM 217

Query: 217 TVAEFTNLTSTLANQLGKCGLKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEIL 276
           TVAEFT+  S L N+LGK G KDEG+ VP+ LGAEN+T+SN+L+ N NS+SYSRT  EIL
Sbjct: 218 TVAEFTDRISALRNRLGKRGNKDEGLRVPRRLGAENRTDSNILSANANSLSYSRTPPEIL 277

The following BLAST results are available for this feature:

BLAST of Lsi02G023840.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DRPE_CRAPL	1.5e-48	42.69	Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1	[more]

BLAST of Lsi02G023840.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K965_CUCSA	1.9e-122	75.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G396330 PE=4 SV=1	[more]
A0A059A7F3_EUCGR	2.1e-73	51.35	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03461 PE=4 SV=1	[more]
V4TVF4_9ROSI	2.2e-70	52.42	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021291mg PE=4 SV=1	[more]
B9GGY2_POPTR	6.5e-70	48.18	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s38900g PE=4 SV=1	[more]
M5W3K3_PRUPE	6.5e-70	53.93	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016740mg PE=4 SV=1	[more]

BLAST of Lsi02G023840.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G62730.1	1.5e-65	49.63	unknown protein	[more]
AT1G47980.1	7.5e-62	44.98	unknown protein	[more]

BLAST of Lsi02G023840.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436521\|ref\|XP_004136041.1\|	2.7e-122	75.65	PREDICTED: desiccation-related protein PCC13-62 [Cucumis sativus]	[more]
gi\|659101432\|ref\|XP_008451603.1\|	8.8e-121	74.84	PREDICTED: desiccation-related protein PCC13-62-like [Cucumis melo]	[more]
gi\|702504278\|ref\|XP_010039275.1\|	3.1e-73	51.35	PREDICTED: desiccation-related protein PCC13-62-like [Eucalyptus grandis]	[more]
gi\|743904421\|ref\|XP_011045583.1\|	1.3e-71	49.50	PREDICTED: desiccation-related protein PCC13-62 [Populus euphratica]	[more]
gi\|567903588\|ref\|XP_006444282.1\|	3.2e-70	52.42	hypothetical protein CICLE_v10021291mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi02G023840	Lsi02G023840	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G023840.1.CDS.1	Lsi02G023840.1.CDS.1	CDS
Lsi02G023840.1.CDS.2	Lsi02G023840.1.CDS.2	CDS
Lsi02G023840.1.CDS.3	Lsi02G023840.1.CDS.3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi02G023840.1	Lsi02G023840.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31694	FAMILY NOT NAMED	coord: 3..275 score: 7.2E
None	No IPR available	PANTHER	PTHR31694:SF6	SUBFAMILY NOT NAMED	coord: 3..275 score: 7.2E
None	No IPR available	PFAM	PF13668	Ferritin_2	coord: 83..175 score: 1.2