Lsi02G023840 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G023840
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Desiccation-related PCC13-62
Location	chr02 : 30523384 .. 30524650 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATGAAAGTTGCATCATTCTTTTGGACATGGTTTCTTTTTGTGGTTTACTCGAGTCGAGTTGTAGTATGTAATAATATCATCGATCAATGTCAATCAATGGTAGCACCTGACGTTGAAATTTTTCGATTTGCTTCGAATTTTGAGTACCTTGAAGGAGAGTTCTACTTGAATAGTGCCCTTGGAAGAGGGATTGACTCCATTAATCCAAGTTTGGCATTTGGAGGACCACCTCCTATTGGTGCTCAAAAGGCTAATTTAGATCATGTCGTTAGTAACATCATTAAAGAATTTGGATATGAAGAGATGGGACAACTAAAGTAAATCATACATAAATCTATGTGTTCATTCAATACTGTTTTACGTTTTTCTGTTTATCTTTATTTGTAGATTTCTTAATTAACTTATATATTTGGTTTTATAAAGACCAATATTATTTCTTAGTTTTTTTTTTTTTTTTTTTGAATTTCAGAGTTGTAATTAAGGCAGCTGGTGGAAGTGGTATTAAAAGGCCATTGTTGAATCTAAGTAAAGAAGTATTTTCAGATATATTTGATAAAGCAGTTGGGTTCAAGCTGGAACCAAGATTTGATCCTTATGCCAATTCCACCAATTTTCTACTTGCTGCCAATATGCTCCCTTACACTGGACTTGTTGGCCTTGTTGGAGCAACCCCTTTGTTTTTCTTTCTCCAATCTCGCAAGGTAAAGGACAATGAGTAACGATTTTGTTTTTAGTTTCTCATCATTTTTATACTATGCTTTTCACTCCTGTGCTCAGCCTATTCAATTGTTTGATTAGAGATGGATTACTCTAAGTTTAGTGTTTAAATTTAAATTTAAAGTTTAGTTGCATGCAGTAAATAATAACATTTTCTTTGCAGCTAGCGGCCTCGCTGCTCGGTGCAGAGTCTGGGCAAAATGCGGTTATACGAACGTTGTTGTACCAGAGGGCCAACGAGATTGTGGTTCCATATAACCTAACGGTGGCAGAGTTCACCAACCTCACCTCGACGCTGGCGAACCAGCTTGGGAAATGCGGGCTCAAAGACGAAGGGATTATTGTCCCTCAGTCGCTCGGGGCGGAGAATCAAACCGAGAGCAACGTTCTTGCGACCAACGTTAACTCCGTTTCGTATTCTCGAACAGTACAAGAAATCTTACGCATACTGTATGCAAGTGGTAGTGAAAGTAAAGCTGGTGCGTTTTTTCCAGAGGGTGCTAATGGTTTGATTGCAAGAAGCTTCCTTGGACCCAATATATGA

mRNA sequence

ATGAGGATGAAAGTTGCATCATTCTTTTGGACATGGTTTCTTTTTGTGGTTTACTCGAGTCGAGTTGTAGTATGTAATAATATCATCGATCAATGTCAATCAATGGTAGCACCTGACGTTGAAATTTTTCGATTTGCTTCGAATTTTGAGTACCTTGAAGGAGAGTTCTACTTGAATAGTGCCCTTGGAAGAGGGATTGACTCCATTAATCCAAGTTTGGCATTTGGAGGACCACCTCCTATTGCTGGTGGAAGTGGTATTAAAAGGCCATTGTTGAATCTAAGTAAAGAAGTATTTTCAGATATATTTGATAAAGCAGTTGGGTTCAAGCTGGAACCAAGATTTGATCCTTATGCCAATTCCACCAATTTTCTACTTGCTGCCAATATGCTCCCTTACACTGGACTTGTTGGCCTTGTTGGAGCAACCCCTTTGTTTTTCTTTCTCCAATCTCGCAAGCTAGCGGCCTCGCTGCTCGGTGCAGAGTCTGGGCAAAATGCGGTTATACGAACGTTGTTGTACCAGAGGGCCAACGAGATTGTGGTTCCATATAACCTAACGGTGGCAGAGTTCACCAACCTCACCTCGACGCTGGCGAACCAGCTTGGGAAATGCGGGCTCAAAGACGAAGGGATTATTGTCCCTCAGTCGCTCGGGGCGGAGAATCAAACCGAGAGCAACGTTCTTGCGACCAACGTTAACTCCGTTTCGTATTCTCGAACAGTACAAGAAATCTTACGCATACTGTATGCAAGTGGTAGTGAAAGTAAAGCTGGTGCGTTTTTTCCAGAGGGTGCTAATGGTTTGATTGCAAGAAGCTTCCTTGGACCCAATATATGA

Coding sequence (CDS)

ATGAGGATGAAAGTTGCATCATTCTTTTGGACATGGTTTCTTTTTGTGGTTTACTCGAGTCGAGTTGTAGTATGTAATAATATCATCGATCAATGTCAATCAATGGTAGCACCTGACGTTGAAATTTTTCGATTTGCTTCGAATTTTGAGTACCTTGAAGGAGAGTTCTACTTGAATAGTGCCCTTGGAAGAGGGATTGACTCCATTAATCCAAGTTTGGCATTTGGAGGACCACCTCCTATTGCTGGTGGAAGTGGTATTAAAAGGCCATTGTTGAATCTAAGTAAAGAAGTATTTTCAGATATATTTGATAAAGCAGTTGGGTTCAAGCTGGAACCAAGATTTGATCCTTATGCCAATTCCACCAATTTTCTACTTGCTGCCAATATGCTCCCTTACACTGGACTTGTTGGCCTTGTTGGAGCAACCCCTTTGTTTTTCTTTCTCCAATCTCGCAAGCTAGCGGCCTCGCTGCTCGGTGCAGAGTCTGGGCAAAATGCGGTTATACGAACGTTGTTGTACCAGAGGGCCAACGAGATTGTGGTTCCATATAACCTAACGGTGGCAGAGTTCACCAACCTCACCTCGACGCTGGCGAACCAGCTTGGGAAATGCGGGCTCAAAGACGAAGGGATTATTGTCCCTCAGTCGCTCGGGGCGGAGAATCAAACCGAGAGCAACGTTCTTGCGACCAACGTTAACTCCGTTTCGTATTCTCGAACAGTACAAGAAATCTTACGCATACTGTATGCAAGTGGTAGTGAAAGTAAAGCTGGTGCGTTTTTTCCAGAGGGTGCTAATGGTTTGATTGCAAGAAGCTTCCTTGGACCCAATATATGA

Protein sequence

MRMKVASFFWTWFLFVVYSSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLNSALGRGIDSINPSLAFGGPPPIAGGSGIKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFFFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGLKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGANGLIARSFLGPNI

Homology

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BLAST of Lsi02G023840 vs. Swiss-Prot
Match: DRPE_CRAPL (Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.5e-48
Identity = 111/260 (42.69%), Postives = 142/260 (54.62%), Query Frame = 1


Query: 39  DVEIFRFASNFEYLEGEFYLNSALGRGIDSINPSLAFGGPPPI----------------- 98
           DV +  F  N E LE EF+  +A G+GID + P LA GGP PI                 
Sbjct: 39  DVSLLEFPLNLELLEAEFFAWAAFGKGIDELEPELAKGGPSPIGVQKANLSPFIRDIIAQ 98

Query: 99  -------------AGGSGIKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAA 158
                        +   G  RPLL+LS + F+ + D A G  L+P FDPYAN  N+LLA 
Sbjct: 99  FAYQEFGHVRAIQSSVEGFPRPLLDLSAKSFATVMDSAFGKTLKPPFDPYANDINYLLAC 158

Query: 159 NMLPYTGLVGLVGATPLFFFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTV 218
            ++PY GL G VGA P      SRKL A LL  E+GQ+A+IR LLY+RA + V PY +TV
Sbjct: 159 YVVPYVGLTGYVGANPKLESPVSRKLVAGLLAVEAGQDAIIRALLYERATDKVEPYGITV 218

Query: 219 AEFTNLTSTLANQLGKCGLKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRI 269
           AEFTN  S L N+LG  G+KD G+IV   LGAE +   NVLA + NS+++ RT +  L  
Sbjct: 219 AEFTNKISELRNKLGDKGVKDLGLIVEPELGAEGKISGNVLAGDKNSLAFPRTPERCLGS 278

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BLAST of Lsi02G023840 vs. TrEMBL
Match: A0A0A0K965_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G396330 PE=4 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 1.9e-122
Identity = 233/308 (75.65%), Postives = 253/308 (82.14%), Query Frame = 1


Query: 1   MRMKVASF-FWTWFLFVVYSSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLN 60
           MRMK AS  FW+WF F+VY SRVVVCNNIIDQCQ MVAPD+E+ RFASNFEYLEGEF+L+
Sbjct: 9   MRMKNASIIFWSWFFFLVYLSRVVVCNNIIDQCQPMVAPDIEVVRFASNFEYLEGEFFLH 68

Query: 61  SALGRGIDSINPSLAFGGPPPI--------------------------------AGGSGI 120
            ALG GIDSINP+LAFGGPPPI                                AGG GI
Sbjct: 69  CALGEGIDSINPNLAFGGPPPIGAQKANLDPVTANIAKEFGYQEIGQLRSVIEAAGGRGI 128

Query: 121 KRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFF 180
           KRPLLNLSKEVFSDIFD+A+GFKLEPRFDPY+NS NFLLAANM PYTGLVGLVGATPL  
Sbjct: 129 KRPLLNLSKEVFSDIFDEAIGFKLEPRFDPYSNSINFLLAANMFPYTGLVGLVGATPLLL 188

Query: 181 FLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGL 240
             QSRKLAASLLGAESGQNAVIRTLLYQRANE V PYN+TVAEFTNLTSTLAN+LGKCGL
Sbjct: 189 LPQSRKLAASLLGAESGQNAVIRTLLYQRANETVDPYNITVAEFTNLTSTLANKLGKCGL 248

Query: 241 KDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGAN 276
           +DEGI+VP SLGAEN+TESN+LA +VNS SYSRTV+E+LRILY SGSESK GAFFP+GAN
Sbjct: 249 RDEGIMVPLSLGAENRTESNILAADVNSRSYSRTVRELLRILYGSGSESKVGAFFPKGAN 308

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BLAST of Lsi02G023840 vs. TrEMBL
Match: A0A059A7F3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03461 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 2.1e-73
Identity = 152/296 (51.35%), Postives = 196/296 (66.22%), Query Frame = 1


Query: 10  WTWFLFVVYSSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLNSALGRGIDSI 69
           +++FL ++  S    C+    +C+ + A DV+  +FA N E+LE EF+L  +LG+G+DSI
Sbjct: 7   FSFFLLLLLLSHKASCD---PRCEPIKASDVDRVQFAMNLEFLEAEFFLRGSLGQGLDSI 66

Query: 70  NPSLAFGGPPPIAGGS------------------------------GIKRPLLNLSKEVF 129
            P LA GGPPP+ G                                GI+RPLLNLS + F
Sbjct: 67  APYLAQGGPPPVGGAKADLDPITRRIIEEFGYQEVGHLRAIYTRVGGIRRPLLNLSAQNF 126

Query: 130 SDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFFFLQSRKLAASLL 189
             +FD+AVG +L+P F+PY N+ N+LLA+ ++PY GLVG VG  P      S+ L ASLL
Sbjct: 127 ETLFDRAVGRQLQPPFNPYGNTVNYLLASYVIPYVGLVGYVGTIPFLESYNSKSLVASLL 186

Query: 190 GAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGLKDEGIIVPQSLG 249
           G ESGQ+AV+RTLLY+RA+E V PYN+TVAEFT   S L N+L  CGLKDEGI+VP+ LG
Sbjct: 187 GVESGQDAVLRTLLYERADEKVEPYNMTVAEFTGHLSRLRNELAMCGLKDEGIMVPKELG 246

Query: 250 AENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGANGLIARSFL 276
           AEN+T SNVL+ +V SVSYSRT  EILRI+Y SGSE K G F+PEG NG IA+SFL
Sbjct: 247 AENRTTSNVLSADVYSVSYSRTPPEILRIIYNSGSEYKPGGFYPEGGNGRIAQSFL 299

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BLAST of Lsi02G023840 vs. TrEMBL
Match: V4TVF4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021291mg PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.2e-70
Identity = 141/269 (52.42%), Postives = 181/269 (67.29%), Query Frame = 1


Query: 37  APDVEIFRFASNFEYLEGEFYLNSALGRGIDSINPSLAFGGPPPIAGGS----------- 96
           A D ++ + A N E+LE EF+LN ALGRG+DSI P +A GGPPP                
Sbjct: 38  ANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRII 97

Query: 97  -------------------GIKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLL 156
                              G  RP ++LS++ F++IFD+AVG+KL P FDPY+N+ N+LL
Sbjct: 98  EEFGYQEIGHLRAIVTTVGGFARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLL 157

Query: 157 AANMLPYTGLVGLVGATPLFFFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNL 216
           A+ ++PY GLVG VG  P      SR L A LLG ESGQ+AVIRTLLY+RA++IVVPY +
Sbjct: 158 ASYVIPYVGLVGYVGTIPNLVNCTSRSLVAGLLGVESGQDAVIRTLLYERADQIVVPYKM 217

Query: 217 TVAEFTNLTSTLANQLGKCGLKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEIL 276
           TVAEFT+  S L N+LGK G KDEG+ VP+ LGAEN+T+SN+L+ N NS+SYSRT  EIL
Sbjct: 218 TVAEFTDRISALRNRLGKRGNKDEGLRVPRRLGAENRTDSNILSANANSLSYSRTPPEIL 277

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BLAST of Lsi02G023840 vs. TrEMBL
Match: B9GGY2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s38900g PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 6.5e-70
Identity = 146/303 (48.18%), Postives = 193/303 (63.70%), Query Frame = 1


Query: 3   MKVASFFWTWFLFVVYSSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLNSAL 62
           M    FF T  L +V S  + V  +    C  + A D ++ +F  N E+LE EF+LN AL
Sbjct: 1   MATLYFFSTLVLTIVVSVPINVLGSAY--CGPVEAIDKDLVQFPLNLEFLEAEFFLNGAL 60

Query: 63  GRGIDSINPSLAFGGPPPIAGGS------------------------------GIKRPLL 122
           G G+D+  P  A GGPPPI                                  G+ RPL 
Sbjct: 61  GLGLDAFEPGFAAGGPPPIGAQKANLDPVTRRIIEEFGYQEVGHLRAIITTVGGVPRPLY 120

Query: 123 NLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFFFLQSR 182
           +LS E F+ +FDKAVG+KL+P F+PY+N+ N+LLA+  +PY GLVG VG  P      SR
Sbjct: 121 DLSPEAFAQLFDKAVGYKLDPPFNPYSNTVNYLLASYAIPYVGLVGYVGTIPHLANYTSR 180

Query: 183 KLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGLKDEGI 242
           +L ASLLG ESGQ+AVIRTLLY++A+E V+PY++TVAEFTN  S + N+L  CG++DEG+
Sbjct: 181 RLVASLLGVESGQDAVIRTLLYEKADEKVLPYDITVAEFTNAISGIRNELAMCGIRDEGL 240

Query: 243 IVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGANGLIAR 276
           IVP +LGAEN+TESN+L+ + NS+SY+RT Q+ILRI+Y +GSE   G F P G +G IAR
Sbjct: 241 IVPLNLGAENRTESNILSADTNSLSYARTPQQILRIIYGTGSEYMPGGFLPRGGSGKIAR 300

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BLAST of Lsi02G023840 vs. TrEMBL
Match: M5W3K3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016740mg PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 6.5e-70
Identity = 144/267 (53.93%), Postives = 181/267 (67.79%), Query Frame = 1


Query: 39  DVEIFRFASNFEYLEGEFYLNSALGRGIDSINPSLAFGGPPPIAGGS------------- 98
           D ++ +FA N E+LE EF+L  ALG G+D+I+P+LA GGPPPI G               
Sbjct: 30  DTDLIQFALNLEFLEAEFFLYGALGEGLDAISPNLALGGPPPIGGHKANLNPLVAPIIQE 89

Query: 99  -----------------GIKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAA 158
                            G  RPLLNLS+E F+ +FD+A GF L P FDPYANS N+LLA+
Sbjct: 90  FGYQEVGHLRAIITTIGGFPRPLLNLSRENFAALFDQAAGFPLTPPFDPYANSVNYLLAS 149

Query: 159 NMLPYTGLVGLVGATPLFFFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTV 218
             +PY GLVG VG  P      +R+L ASLLG E+GQ+AVIR LLY+ A+  V PY LTV
Sbjct: 150 YAIPYVGLVGYVGTIPNLTEPTNRRLVASLLGVEAGQDAVIRALLYKMAHWKVFPYRLTV 209

Query: 219 AEFTNLTSTLANQLGKCGLKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRI 276
           A+FTNL S L N+LG CG+KDEGIIVP++LGAEN+T SNVL+ +++S+SY+RT  EILRI
Sbjct: 210 ADFTNLISGLRNKLGGCGIKDEGIIVPETLGAENRTCSNVLSADLDSLSYARTQPEILRI 269

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BLAST of Lsi02G023840 vs. TAIR10
Match: AT3G62730.1 (AT3G62730.1 unknown protein)

HSP 1 Score: 246.9 bits (629), Expect = 1.5e-65
Identity = 134/270 (49.63%), Postives = 167/270 (61.85%), Query Frame = 1


Query: 37  APDVEIFRFASNFEYLEGEFYLNSALGRGIDSINPSLAFGGPPP---------------- 96
           A DV+   FA N E+ E EF+L  A G+G+D+ N +LA GGPPP                
Sbjct: 32  ASDVDRVHFAMNLEFTEAEFFLKGATGKGLDAYNATLAKGGPPPIGAKKANLDPITNRII 91

Query: 97  --------------IAGGSGIKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLL 156
                              GI RPL+NL++E F+   D+AVG K  PRFDPYANS N+LL
Sbjct: 92  EEFGYQEIGHLRAITDMTGGIPRPLINLTRENFAVFMDRAVGRKSNPRFDPYANSLNYLL 151

Query: 157 AANMLPYTGLVGLVGATPLFFFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPY-N 216
           A+  +PY GL G VG  P   +   +KL A LLG ESGQ+AVIRTLLY+R NE V  Y  
Sbjct: 152 ASYYIPYVGLTGYVGTIPYLVYFNIKKLVAGLLGVESGQDAVIRTLLYERQNEKVEEYGG 211

Query: 217 LTVAEFTNLTSTLANQLGKCGLKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEI 276
           +TVAE TN  S L N+LG CG+KDEG+ VP  LGAEN+T SN+L+ +  S+SY RT QEI
Sbjct: 212 VTVAELTNEISNLRNELGMCGIKDEGLCVPLWLGAENRTTSNILSADPYSLSYDRTAQEI 271

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BLAST of Lsi02G023840 vs. TAIR10
Match: AT1G47980.1 (AT1G47980.1 unknown protein)

HSP 1 Score: 234.6 bits (597), Expect = 7.5e-62
Identity = 139/309 (44.98%), Postives = 178/309 (57.61%), Query Frame = 1


Query: 2   RMKVASFFWTWFLFVVYSSRVVVC-----NNIIDQCQSMVAPDVEIFRFASNFEYLEGEF 61
           R  + S    +F F  +  +V  C      N  DQ       D ++  F  N EYLE EF
Sbjct: 8   RSLLVSMVLVFFFFNFHHLQVTSCPDQATTNCTDQ-------DRKLLEFPLNLEYLEAEF 67

Query: 62  YLNSALGRGIDSINPSLAFGGPPPIAGGS-----------------------GIK----- 121
           +L  ALG G+D + P+L  GGP PI                            IK     
Sbjct: 68  FLFGALGLGLDKVAPNLTMGGPSPIGAQKANLDPLTRDIILQFAWQEVGHLRAIKKTVKG 127

Query: 122 --RPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLF 181
             RP L+LSK+ F+ + DKA G K  P F+PYANS N+L+A+ ++PY GL G VGA P  
Sbjct: 128 FARPQLDLSKKAFAKVMDKAFGVKFVPPFNPYANSYNYLIASYLVPYVGLTGYVGANPKL 187

Query: 182 FFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCG 241
               SRKL A LLG ESGQ+AVIR +LY RA  IV PY +TVA FT+  S L N+LGK G
Sbjct: 188 QCPASRKLVAGLLGVESGQDAVIRGMLYARAAHIVYPYGVTVAAFTDKISDLRNKLGKAG 247

Query: 242 LKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGA 276
           +KDEG+IVP+ +GAE Q   NVL  N  S+S+ RT +EILRI+Y SG+ES  G F+P+GA
Sbjct: 248 VKDEGLIVPKFMGAEGQVIGNVLVGNELSLSFDRTPEEILRIVYGSGNESVPGGFYPKGA 307

[Close]

BLAST of Lsi02G023840 vs. NCBI nr
Match: gi|449436521|ref|XP_004136041.1| (PREDICTED: desiccation-related protein PCC13-62 [Cucumis sativus])

HSP 1 Score: 446.8 bits (1148), Expect = 2.7e-122
Identity = 233/308 (75.65%), Postives = 253/308 (82.14%), Query Frame = 1


Query: 1   MRMKVASF-FWTWFLFVVYSSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLN 60
           MRMK AS  FW+WF F+VY SRVVVCNNIIDQCQ MVAPD+E+ RFASNFEYLEGEF+L+
Sbjct: 9   MRMKNASIIFWSWFFFLVYLSRVVVCNNIIDQCQPMVAPDIEVVRFASNFEYLEGEFFLH 68

Query: 61  SALGRGIDSINPSLAFGGPPPI--------------------------------AGGSGI 120
            ALG GIDSINP+LAFGGPPPI                                AGG GI
Sbjct: 69  CALGEGIDSINPNLAFGGPPPIGAQKANLDPVTANIAKEFGYQEIGQLRSVIEAAGGRGI 128

Query: 121 KRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFF 180
           KRPLLNLSKEVFSDIFD+A+GFKLEPRFDPY+NS NFLLAANM PYTGLVGLVGATPL  
Sbjct: 129 KRPLLNLSKEVFSDIFDEAIGFKLEPRFDPYSNSINFLLAANMFPYTGLVGLVGATPLLL 188

Query: 181 FLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGL 240
             QSRKLAASLLGAESGQNAVIRTLLYQRANE V PYN+TVAEFTNLTSTLAN+LGKCGL
Sbjct: 189 LPQSRKLAASLLGAESGQNAVIRTLLYQRANETVDPYNITVAEFTNLTSTLANKLGKCGL 248

Query: 241 KDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGAN 276
           +DEGI+VP SLGAEN+TESN+LA +VNS SYSRTV+E+LRILY SGSESK GAFFP+GAN
Sbjct: 249 RDEGIMVPLSLGAENRTESNILAADVNSRSYSRTVRELLRILYGSGSESKVGAFFPKGAN 308

[Close]

BLAST of Lsi02G023840 vs. NCBI nr
Match: gi|659101432|ref|XP_008451603.1| (PREDICTED: desiccation-related protein PCC13-62-like [Cucumis melo])

HSP 1 Score: 441.8 bits (1135), Expect = 8.8e-121
Identity = 235/314 (74.84%), Postives = 256/314 (81.53%), Query Frame = 1


Query: 1   MRMKVASF-FWTWFLFVVYSS-RVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYL 60
           MRMK AS  FW WF F+VYSS RVVVCNNIIDQCQ MVAPD+E+ RFASNFEYLEGEF+L
Sbjct: 1   MRMKNASIIFWPWFFFMVYSSSRVVVCNNIIDQCQPMVAPDIEVVRFASNFEYLEGEFFL 60

Query: 61  NSALGRGIDSINPSLAFGGPPPI--------------------------------AGGSG 120
           +SALG+GIDSINP+LAFGGPPPI                                AGG G
Sbjct: 61  HSALGKGIDSINPNLAFGGPPPIGAQKANLDHVTAKMAEEFGNQEIGQLRAVIEAAGGRG 120

Query: 121 IKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLF 180
           IKRPLLNLSKEVFSDIFDKA+GFKL+PRFDPY+NS NFLLAAN+ PYTGLVGLVGATPL 
Sbjct: 121 IKRPLLNLSKEVFSDIFDKAIGFKLKPRFDPYSNSINFLLAANLFPYTGLVGLVGATPLL 180

Query: 181 FFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCG 240
              QSRKLAASLLGAESGQNAVIRTLLYQRANE V PYN+TVAEFTN TSTLAN+L  CG
Sbjct: 181 LLPQSRKLAASLLGAESGQNAVIRTLLYQRANETVHPYNITVAEFTNRTSTLANKLANCG 240

Query: 241 LKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGA 280
           LKDEGIIVP+SLGAEN+TESN+LA +V S SYSRTV+E+LRILYASGSESK GAFFP+GA
Sbjct: 241 LKDEGIIVPRSLGAENRTESNILAADVYSRSYSRTVRELLRILYASGSESKVGAFFPKGA 300

[Close]

BLAST of Lsi02G023840 vs. NCBI nr
Match: gi|702504278|ref|XP_010039275.1| (PREDICTED: desiccation-related protein PCC13-62-like [Eucalyptus grandis])

HSP 1 Score: 283.9 bits (725), Expect = 3.1e-73
Identity = 152/296 (51.35%), Postives = 196/296 (66.22%), Query Frame = 1


Query: 10  WTWFLFVVYSSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLNSALGRGIDSI 69
           +++FL ++  S    C+    +C+ + A DV+  +FA N E+LE EF+L  +LG+G+DSI
Sbjct: 7   FSFFLLLLLLSHKASCD---PRCEPIKASDVDRVQFAMNLEFLEAEFFLRGSLGQGLDSI 66

Query: 70  NPSLAFGGPPPIAGGS------------------------------GIKRPLLNLSKEVF 129
            P LA GGPPP+ G                                GI+RPLLNLS + F
Sbjct: 67  APYLAQGGPPPVGGAKADLDPITRRIIEEFGYQEVGHLRAIYTRVGGIRRPLLNLSAQNF 126

Query: 130 SDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFFFLQSRKLAASLL 189
             +FD+AVG +L+P F+PY N+ N+LLA+ ++PY GLVG VG  P      S+ L ASLL
Sbjct: 127 ETLFDRAVGRQLQPPFNPYGNTVNYLLASYVIPYVGLVGYVGTIPFLESYNSKSLVASLL 186

Query: 190 GAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGLKDEGIIVPQSLG 249
           G ESGQ+AV+RTLLY+RA+E V PYN+TVAEFT   S L N+L  CGLKDEGI+VP+ LG
Sbjct: 187 GVESGQDAVLRTLLYERADEKVEPYNMTVAEFTGHLSRLRNELAMCGLKDEGIMVPKELG 246

Query: 250 AENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGANGLIARSFL 276
           AEN+T SNVL+ +V SVSYSRT  EILRI+Y SGSE K G F+PEG NG IA+SFL
Sbjct: 247 AENRTTSNVLSADVYSVSYSRTPPEILRIIYNSGSEYKPGGFYPEGGNGRIAQSFL 299

[Close]

BLAST of Lsi02G023840 vs. NCBI nr
Match: gi|743904421|ref|XP_011045583.1| (PREDICTED: desiccation-related protein PCC13-62 [Populus euphratica])

HSP 1 Score: 278.5 bits (711), Expect = 1.3e-71
Identity = 150/303 (49.50%), Postives = 192/303 (63.37%), Query Frame = 1


Query: 3   MKVASFFWTWFLFVVYSSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLNSAL 62
           M    FF T  L +V S  + V  +    C  + A D ++ +F  N E+LE E +LN AL
Sbjct: 1   MATLYFFSTLVLTIVVSVPINVLGSAY--CGPVEANDKDLIQFPLNLEFLEAELFLNGAL 60

Query: 63  GRGIDSINPSLAFGGPPPIAG------------------------------GSGIKRPLL 122
           G G+D+I P  A GGPPPI                                  GI RPL 
Sbjct: 61  GHGLDAIEPGFAAGGPPPIGALKANLDPVTRRIIEEFGYQEVGHLRAIITTVGGIPRPLY 120

Query: 123 NLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFFFLQSR 182
           +LS E F+ +FDKAVG+KL P F+PY+N+ N+LLA+  +PY GLVG VG  P      SR
Sbjct: 121 DLSPEAFAQLFDKAVGYKLNPPFNPYSNTVNYLLASYAIPYVGLVGYVGTIPYLANYTSR 180

Query: 183 KLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGLKDEGI 242
           +L ASLLG ESGQ+AVIRTLLY++A+E V+PYN+TVAEFTN  S L N+L  CG++DEG+
Sbjct: 181 RLVASLLGVESGQDAVIRTLLYEKADEKVLPYNITVAEFTNAISCLRNELAMCGIRDEGL 240

Query: 243 IVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGANGLIAR 276
           IVP  LGAEN+TESN+L+ + NS+SY+RT Q+ILRI+Y +GSE + G F P G NG IAR
Sbjct: 241 IVPLHLGAENRTESNILSADTNSLSYARTQQQILRIIYGTGSEYRPGGFLPRGGNGKIAR 300

[Close]

BLAST of Lsi02G023840 vs. NCBI nr
Match: gi|567903588|ref|XP_006444282.1| (hypothetical protein CICLE_v10021291mg [Citrus clementina])

HSP 1 Score: 273.9 bits (699), Expect = 3.2e-70
Identity = 141/269 (52.42%), Postives = 181/269 (67.29%), Query Frame = 1


Query: 37  APDVEIFRFASNFEYLEGEFYLNSALGRGIDSINPSLAFGGPPPIAGGS----------- 96
           A D ++ + A N E+LE EF+LN ALGRG+DSI P +A GGPPP                
Sbjct: 38  ANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRII 97

Query: 97  -------------------GIKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLL 156
                              G  RP ++LS++ F++IFD+AVG+KL P FDPY+N+ N+LL
Sbjct: 98  EEFGYQEIGHLRAIVTTVGGFARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLL 157

Query: 157 AANMLPYTGLVGLVGATPLFFFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNL 216
           A+ ++PY GLVG VG  P      SR L A LLG ESGQ+AVIRTLLY+RA++IVVPY +
Sbjct: 158 ASYVIPYVGLVGYVGTIPNLVNCTSRSLVAGLLGVESGQDAVIRTLLYERADQIVVPYKM 217

Query: 217 TVAEFTNLTSTLANQLGKCGLKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEIL 276
           TVAEFT+  S L N+LGK G KDEG+ VP+ LGAEN+T+SN+L+ N NS+SYSRT  EIL
Sbjct: 218 TVAEFTDRISALRNRLGKRGNKDEGLRVPRRLGAENRTDSNILSANANSLSYSRTPPEIL 277

The following BLAST results are available for this feature:

BLAST of Lsi02G023840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DRPE_CRAPL	1.5e-48	42.69	Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1	[more]

BLAST of Lsi02G023840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K965_CUCSA	1.9e-122	75.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G396330 PE=4 SV=1	[more]
A0A059A7F3_EUCGR	2.1e-73	51.35	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03461 PE=4 SV=1	[more]
V4TVF4_9ROSI	2.2e-70	52.42	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021291mg PE=4 SV=1	[more]
B9GGY2_POPTR	6.5e-70	48.18	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s38900g PE=4 SV=1	[more]
M5W3K3_PRUPE	6.5e-70	53.93	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016740mg PE=4 SV=1	[more]

BLAST of Lsi02G023840 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G62730.1	1.5e-65	49.63	unknown protein	[more]
AT1G47980.1	7.5e-62	44.98	unknown protein	[more]

BLAST of Lsi02G023840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436521\|ref\|XP_004136041.1\|	2.7e-122	75.65	PREDICTED: desiccation-related protein PCC13-62 [Cucumis sativus]	[more]
gi\|659101432\|ref\|XP_008451603.1\|	8.8e-121	74.84	PREDICTED: desiccation-related protein PCC13-62-like [Cucumis melo]	[more]
gi\|702504278\|ref\|XP_010039275.1\|	3.1e-73	51.35	PREDICTED: desiccation-related protein PCC13-62-like [Eucalyptus grandis]	[more]
gi\|743904421\|ref\|XP_011045583.1\|	1.3e-71	49.50	PREDICTED: desiccation-related protein PCC13-62 [Populus euphratica]	[more]
gi\|567903588\|ref\|XP_006444282.1\|	3.2e-70	52.42	hypothetical protein CICLE_v10021291mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G023840.1	Lsi02G023840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31694	FAMILY NOT NAMED	coord: 3..275 score: 7.2E
None	No IPR available	PANTHER	PTHR31694:SF6	SUBFAMILY NOT NAMED	coord: 3..275 score: 7.2E
None	No IPR available	PFAM	PF13668	Ferritin_2	coord: 83..175 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G023840	Wax gourd	lsiwgoB202
Lsi02G023840	Wax gourd	lsiwgoB218
Lsi02G023840	Wax gourd	lsiwgoB271
Lsi02G023840	Bottle gourd (USVL1VR-Ls)	lsilsiB091
Lsi02G023840	Cucumber (Gy14) v1	cgylsiB110
Lsi02G023840	Cucumber (Gy14) v1	cgylsiB351
Lsi02G023840	Cucurbita maxima (Rimu)	cmalsiB348
Lsi02G023840	Cucurbita maxima (Rimu)	cmalsiB822
Lsi02G023840	Cucurbita moschata (Rifu)	cmolsiB337
Lsi02G023840	Cucurbita moschata (Rifu)	cmolsiB809
Lsi02G023840	Cucurbita pepo (Zucchini)	cpelsiB113
Lsi02G023840	Cucurbita pepo (Zucchini)	cpelsiB262
Lsi02G023840	Cucurbita pepo (Zucchini)	cpelsiB705
Lsi02G023840	Wild cucumber (PI 183967)	cpilsiB266
Lsi02G023840	Wild cucumber (PI 183967)	cpilsiB517
Lsi02G023840	Cucumber (Chinese Long) v2	culsiB178
Lsi02G023840	Cucumber (Chinese Long) v2	culsiB267
Lsi02G023840	Cucumber (Chinese Long) v2	culsiB503
Lsi02G023840	Melon (DHL92) v3.5.1	lsimeB192
Lsi02G023840	Melon (DHL92) v3.5.1	lsimeB226
Lsi02G023840	Watermelon (Charleston Gray)	lsiwcgB159
Lsi02G023840	Watermelon (97103) v1	lsiwmB175
Lsi02G023840	Watermelon (97103) v1	lsiwmB178
Lsi02G023840	Watermelon (97103) v1	lsiwmB226
Lsi02G023840	Cucumber (Gy14) v2	cgyblsiB472
Lsi02G023840	Melon (DHL92) v3.6.1	lsimedB180
Lsi02G023840	Melon (DHL92) v3.6.1	lsimedB201
Lsi02G023840	Silver-seed gourd	carlsiB098
Lsi02G023840	Cucumber (Chinese Long) v3	cuclsiB287
Lsi02G023840	Cucumber (Chinese Long) v3	cuclsiB538
Lsi02G023840	Watermelon (97103) v2	lsiwmbB162
Lsi02G023840	Watermelon (97103) v2	lsiwmbB188
Lsi02G023840	Watermelon (97103) v2	lsiwmbB198
Lsi02G023840	Watermelon (97103) v2	lsiwmbB212