Lsi01G011140.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G011140.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionProtein kinase superfamily protein
Locationchr01 : 9213143 .. 9215368 (-)
Sequence length342
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGGGTGTTTGTATTTCCTTCAAGCTTCCTGATGTCAACAAAGGCATAGCCATTGGCATACCTTCGAAGAATTGTCTCGGGGGAAAAGCTTGCTTGTACCACATTTTTTGAAGACAGATTGGAAATGGTTTCAGCCTTTTCAGAAATTGATCCTAGCAATCTAGGTCGGTGGGATTTAGTTGCTTAAGGGCTGCCATAGAATATTATTTTGGCTACAGTATTAGAACCACCTGGTATGGCCTCAAGAATTGTTTTTTCAAGCCATCAGCAAATGCTCTATATTTCAATCTGATTTACACAGATGTTTCCTTTTTCCTTTTAAATTTCACAGATTTCAGACTCTGGTTTGGCAAAATGGCTCCCAAATCAATGGTCTCAGCACTCAATTGCTCAAATTGAAGTCGGGTATTCTGCAAACCTTTCCTTTAATTATGTCATCATCTTAACCATATCAGCTGAATCAACATGATTAAACTTTTTCATTGAGGTTAACTTGGTTTCACTCCAATGGTAGTTAATGAGATCAACACTTCAGATTTTCCAGTGATTTAAGAGGAGGAATCCCAATGATCAACGCTTCAGATTTTCCATTAAGGTAAACTTCTTCATTGTTAAAAGTATACCATGCATGTTTAAGGATAGTATTTGGAGAATTTTTACATTAAATCATTAACCATAGACATGTAAATTTTGTATAGATTTTTTCTGTAGTGTCACCTAGGGGTATAGTTTGGTTCCATTAGACCAGTTTTATATCGAACCAGCTAAACCGATTGATTTGGTCACTTGATACTGTTGGGATTGAACCAAATTGGACTGATTTTAGTTTTGGTCAAAGGAGATGAAGTTGTTGGATCTTTGATTTGTAAGTCTTATTGAAGTTTCAATAAATTTTGAAGCACACCATGCAAACACATCAACGCATAAATTTCAAGTATAAAGTATCTTCACTCAGATAATTCAAGGTCAAAGTACGGAGGCTACAAAGCAACAATTACGTATTATAAGACCACACTGACTAATCAAAAACCAAGACCTAACACTGTAGTCTTAAAAATTCCATTGGGTTGACGTTGCTGAATCTTCTTCTTCCTTTGGTTTGGGTTGTTTGATCCCTAATTTGGATGGCTTGTATGCATGGAAAAAAAAAAAAATCAACCTCGGGGAAAAATTGCCAGCATGAGTATAATTCAACTTACATAAAGTATGAATTATTGACCAAGAATTCAGAGGTTCGAATTTCTCACTTATTTACCATAGGTTTTGAGTTATATTTTTTTTAGAGAAAAATATCTTTTTGGTCTCTAGGTTTTGAGTTGAGTTTCTATTTAGTCCCTAAGTTTTAAAATATTTCAATTTACCCTTGAGATTTAAGTTTTATTTCAATTTAATCCCTAAATTTTAAGATTTACACTTTTAACCTCAATTTTCACTAAATGCGCAATAACTAATTTAAAAGAATTATAAGTAGGGTTGTTTTCAAATATATAAAAATAAGCCAAACTATTTACAAATATATAAAAATTTTCTATTGCAGTCTATTAGACCGTGAAATTTTTCTATATTTGTAAATAGTTTGATATTTTTTATGTTACTAGTAATTTTCCTTATAATTAATTAAATTTCACTATTTTTCATCATTATTAAAATTAATTTTAAAATTTCACTTTATAATTATTTTAAATTAATTAATAAATATTAATGTTAAAGACTTTAGTGTAAAATTGAGATTAAGAGTGTAAATCTTGAAACCTAAGACTAAATTGAAACAAAACTCAAATCTCAATTTTACTATCGTACCATTTTGAAATTTGGGGACTAAATTAAAACCACACTCAAAATTTAAGTATTAAAAATGTAACATTTTAAAACTTAAGAATCAAATAAAAATTAGTCCAAAATTTAGGACAAAAAATGTGTATATATATATATAATAGTTTTGTAAATGACAATGTATCAAATTTAAGGTTAAAGACTGCAACATGTAACCGAATCAAATGTGAAATTTAATGAAATTTAAACAAACTCGTCAAATTTTTTGGATTGGTATTGAAATAATAAGTTTGCACTGTCCTAAAAAAGGAAAATTGAGGCAGTTTTAATGACATTTCAGCCTATTTGTTAGGTACGGCCTTTTTTTTCTTTTTTTTTTTTGGGTCAGCGTGTGGCCTTCCAAAATTGATTTCTTCTATTCTCTTCCCAATTCTAGAAGTAGACTGTAA

mRNA sequence

ATGGTCGGGTCGGTGGGATTTAGTTGCTTAAGGGCTGCCATAGAATATTATTTTGGCTACAGTATTAGAACCACCTGGTATGGCCTCAAGAATTGTTTTTTCAAGCCATCAGCAAATGCTCTATATTTCAATCTGATTTACACAGATATTTCAGACTCTGGTTTGGCAAAATGGCTCCCAAATCAATGGTCTCAGCACTCAATTGCTCAAATTGAAGTCGGATTTTCCAGTGATTTAAGAGGAGGAATCCCAATGATCAACGCTTCAGATTTTCCATTAAGCGTGTGGCCTTCCAAAATTGATTTCTTCTATTCTCTTCCCAATTCTAGAAGTAGACTGTAA

Coding sequence (CDS)

ATGGTCGGGTCGGTGGGATTTAGTTGCTTAAGGGCTGCCATAGAATATTATTTTGGCTACAGTATTAGAACCACCTGGTATGGCCTCAAGAATTGTTTTTTCAAGCCATCAGCAAATGCTCTATATTTCAATCTGATTTACACAGATATTTCAGACTCTGGTTTGGCAAAATGGCTCCCAAATCAATGGTCTCAGCACTCAATTGCTCAAATTGAAGTCGGATTTTCCAGTGATTTAAGAGGAGGAATCCCAATGATCAACGCTTCAGATTTTCCATTAAGCGTGTGGCCTTCCAAAATTGATTTCTTCTATTCTCTTCCCAATTCTAGAAGTAGACTGTAA

Protein sequence

MVGSVGFSCLRAAIEYYFGYSIRTTWYGLKNCFFKPSANALYFNLIYTDISDSGLAKWLPNQWSQHSIAQIEVGFSSDLRGGIPMINASDFPLSVWPSKIDFFYSLPNSRSRL
Homology
[Close]
BLAST of Lsi01G011140.1 vs. TAIR10
Match: AT2G18890.1 (AT2G18890.1 Protein kinase superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 6.9e-06
Identity = 23/39 (58.97%), Postives = 25/39 (64.10%), Query Frame = 1 

Query: 37  SANALYFNLIYTDISDSGLAKWLPNQWSQHSIAQIEVGF 76
           S+N L        ISD GLAKWLP+QWS HSIA IE  F
Sbjct: 198 SSNVLLNQDFEPQISDFGLAKWLPSQWSHHSIAPIEGTF 236

The following BLAST results are available for this feature:
BLAST of Lsi01G011140.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi01G011140.1 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi01G011140.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G18890.16.9e-0658.97 Protein kinase superfamily protein[more]
BLAST of Lsi01G011140.1 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi01G011140Lsi01G011140gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi01G011140.1.CDS.5Lsi01G011140.1.CDS.5CDS
Lsi01G011140.1.CDS.4Lsi01G011140.1.CDS.4CDS
Lsi01G011140.1.CDS.3Lsi01G011140.1.CDS.3CDS
Lsi01G011140.1.CDS.2Lsi01G011140.1.CDS.2CDS
Lsi01G011140.1.CDS.1Lsi01G011140.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi01G011140.1Lsi01G011140.1-proteinpolypeptide