Lsi01G011140 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G011140
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Protein kinase superfamily protein
Location	chr01 : 9213143 .. 9215368 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGGGTGTTTGTATTTCCTTCAAGCTTCCTGATGTCAACAAAGGCATAGCCATTGGCATACCTTCGAAGAATTGTCTCGGGGGAAAAGCTTGCTTGTACCACATTTTTTGAAGACAGATTGGAAATGGTTTCAGCCTTTTCAGAAATTGATCCTAGCAATCTAGGTCGGTGGGATTTAGTTGCTTAAGGGCTGCCATAGAATATTATTTTGGCTACAGTATTAGAACCACCTGGTATGGCCTCAAGAATTGTTTTTTCAAGCCATCAGCAAATGCTCTATATTTCAATCTGATTTACACAGATGTTTCCTTTTTCCTTTTAAATTTCACAGATTTCAGACTCTGGTTTGGCAAAATGGCTCCCAAATCAATGGTCTCAGCACTCAATTGCTCAAATTGAAGTCGGGTATTCTGCAAACCTTTCCTTTAATTATGTCATCATCTTAACCATATCAGCTGAATCAACATGATTAAACTTTTTCATTGAGGTTAACTTGGTTTCACTCCAATGGTAGTTAATGAGATCAACACTTCAGATTTTCCAGTGATTTAAGAGGAGGAATCCCAATGATCAACGCTTCAGATTTTCCATTAAGGTAAACTTCTTCATTGTTAAAAGTATACCATGCATGTTTAAGGATAGTATTTGGAGAATTTTTACATTAAATCATTAACCATAGACATGTAAATTTTGTATAGATTTTTTCTGTAGTGTCACCTAGGGGTATAGTTTGGTTCCATTAGACCAGTTTTATATCGAACCAGCTAAACCGATTGATTTGGTCACTTGATACTGTTGGGATTGAACCAAATTGGACTGATTTTAGTTTTGGTCAAAGGAGATGAAGTTGTTGGATCTTTGATTTGTAAGTCTTATTGAAGTTTCAATAAATTTTGAAGCACACCATGCAAACACATCAACGCATAAATTTCAAGTATAAAGTATCTTCACTCAGATAATTCAAGGTCAAAGTACGGAGGCTACAAAGCAACAATTACGTATTATAAGACCACACTGACTAATCAAAAACCAAGACCTAACACTGTAGTCTTAAAAATTCCATTGGGTTGACGTTGCTGAATCTTCTTCTTCCTTTGGTTTGGGTTGTTTGATCCCTAATTTGGATGGCTTGTATGCATGGAAAAAAAAAAAAATCAACCTCGGGGAAAAATTGCCAGCATGAGTATAATTCAACTTACATAAAGTATGAATTATTGACCAAGAATTCAGAGGTTCGAATTTCTCACTTATTTACCATAGGTTTTGAGTTATATTTTTTTTAGAGAAAAATATCTTTTTGGTCTCTAGGTTTTGAGTTGAGTTTCTATTTAGTCCCTAAGTTTTAAAATATTTCAATTTACCCTTGAGATTTAAGTTTTATTTCAATTTAATCCCTAAATTTTAAGATTTACACTTTTAACCTCAATTTTCACTAAATGCGCAATAACTAATTTAAAAGAATTATAAGTAGGGTTGTTTTCAAATATATAAAAATAAGCCAAACTATTTACAAATATATAAAAATTTTCTATTGCAGTCTATTAGACCGTGAAATTTTTCTATATTTGTAAATAGTTTGATATTTTTTATGTTACTAGTAATTTTCCTTATAATTAATTAAATTTCACTATTTTTCATCATTATTAAAATTAATTTTAAAATTTCACTTTATAATTATTTTAAATTAATTAATAAATATTAATGTTAAAGACTTTAGTGTAAAATTGAGATTAAGAGTGTAAATCTTGAAACCTAAGACTAAATTGAAACAAAACTCAAATCTCAATTTTACTATCGTACCATTTTGAAATTTGGGGACTAAATTAAAACCACACTCAAAATTTAAGTATTAAAAATGTAACATTTTAAAACTTAAGAATCAAATAAAAATTAGTCCAAAATTTAGGACAAAAAATGTGTATATATATATATAATAGTTTTGTAAATGACAATGTATCAAATTTAAGGTTAAAGACTGCAACATGTAACCGAATCAAATGTGAAATTTAATGAAATTTAAACAAACTCGTCAAATTTTTTGGATTGGTATTGAAATAATAAGTTTGCACTGTCCTAAAAAAGGAAAATTGAGGCAGTTTTAATGACATTTCAGCCTATTTGTTAGGTACGGCCTTTTTTTTCTTTTTTTTTTTTGGGTCAGCGTGTGGCCTTCCAAAATTGATTTCTTCTATTCTCTTCCCAATTCTAGAAGTAGACTGTAA

mRNA sequence

ATGGTCGGGTCGGTGGGATTTAGTTGCTTAAGGGCTGCCATAGAATATTATTTTGGCTACAGTATTAGAACCACCTGGTATGGCCTCAAGAATTGTTTTTTCAAGCCATCAGCAAATGCTCTATATTTCAATCTGATTTACACAGATATTTCAGACTCTGGTTTGGCAAAATGGCTCCCAAATCAATGGTCTCAGCACTCAATTGCTCAAATTGAAGTCGGATTTTCCAGTGATTTAAGAGGAGGAATCCCAATGATCAACGCTTCAGATTTTCCATTAAGCGTGTGGCCTTCCAAAATTGATTTCTTCTATTCTCTTCCCAATTCTAGAAGTAGACTGTAA

Coding sequence (CDS)

ATGGTCGGGTCGGTGGGATTTAGTTGCTTAAGGGCTGCCATAGAATATTATTTTGGCTACAGTATTAGAACCACCTGGTATGGCCTCAAGAATTGTTTTTTCAAGCCATCAGCAAATGCTCTATATTTCAATCTGATTTACACAGATATTTCAGACTCTGGTTTGGCAAAATGGCTCCCAAATCAATGGTCTCAGCACTCAATTGCTCAAATTGAAGTCGGATTTTCCAGTGATTTAAGAGGAGGAATCCCAATGATCAACGCTTCAGATTTTCCATTAAGCGTGTGGCCTTCCAAAATTGATTTCTTCTATTCTCTTCCCAATTCTAGAAGTAGACTGTAA

Protein sequence

MVGSVGFSCLRAAIEYYFGYSIRTTWYGLKNCFFKPSANALYFNLIYTDISDSGLAKWLPNQWSQHSIAQIEVGFSSDLRGGIPMINASDFPLSVWPSKIDFFYSLPNSRSRL

Homology

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BLAST of Lsi01G011140 vs. TAIR10
Match: AT2G18890.1 (AT2G18890.1 Protein kinase superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 6.9e-06
Identity = 23/39 (58.97%), Postives = 25/39 (64.10%), Query Frame = 1


Query: 37  SANALYFNLIYTDISDSGLAKWLPNQWSQHSIAQIEVGF 76
           S+N L        ISD GLAKWLP+QWS HSIA IE  F
Sbjct: 198 SSNVLLNQDFEPQISDFGLAKWLPSQWSHHSIAPIEGTF 236

The following BLAST results are available for this feature:

BLAST of Lsi01G011140 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G011140 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of Lsi01G011140 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G18890.1	6.9e-06	58.97	Protein kinase superfamily protein	[more]

BLAST of Lsi01G011140 vs. NCBI nr


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G011140.1	Lsi01G011140.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G011140	Watermelon (97103) v2	lsiwmbB115
Lsi01G011140	Watermelon (97103) v2	lsiwmbB126
Lsi01G011140	Wax gourd	lsiwgoB162
Lsi01G011140	Wax gourd	lsiwgoB183
Lsi01G011140	Bottle gourd (USVL1VR-Ls)	lsilsiB029
Lsi01G011140	Cucumber (Gy14) v1	cgylsiB125
Lsi01G011140	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G011140	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G011140	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G011140	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G011140	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G011140	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G011140	Wild cucumber (PI 183967)	cpilsiB105
Lsi01G011140	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G011140	Cucumber (Chinese Long) v2	culsiB108
Lsi01G011140	Cucumber (Chinese Long) v2	culsiB434
Lsi01G011140	Melon (DHL92) v3.5.1	lsimeB150
Lsi01G011140	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G011140	Watermelon (97103) v1	lsiwmB142
Lsi01G011140	Watermelon (97103) v1	lsiwmB160
Lsi01G011140	Cucumber (Gy14) v2	cgyblsiB096
Lsi01G011140	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G011140	Melon (DHL92) v3.6.1	lsimedB157
Lsi01G011140	Silver-seed gourd	carlsiB214
Lsi01G011140	Silver-seed gourd	carlsiB742
Lsi01G011140	Cucumber (Chinese Long) v3	cuclsiB462