Lsi01G004850.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G004850.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr01 : 4024891 .. 4025238 (+)
Sequence length	306

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCTCCTCCGTTGTGGCCCGTCTCATATTCCGTCGCCTTGTGGAGCAGCGTCGCTGCCATTACCACCTTGGACTGGCCATGAGACGAACATTTTAATTTCTCAATTCATAATTCTATGGATGTTTTGTTATTGATTGTGTGTTTATGTGACGGGGGATTTTAGATCCAATCTCTTACTAGATATGGAGCGAACCGTGCTATGTTCGTATATTGCCGGAGTTAACGTCACAAAGAAATTCCCGTCGATGTCGATGGCTCCTCTTTGGAGTCTCCATCGGCTGCTGGTATCATATTCCATTGCCTTGTGGAGCAGCGTTGCTGCCTTTACTTCTTGGGACTGGCCATGA

mRNA sequence

GATCTCCTCCGTTGTGGCCCGTCTCATATTCCGTCGCCTTGTGGAGCAGCGTCGCTGCCATTACCACCTTGGACTGGCCATGAGACGAACATTTTAATTTCTCAATTCATAATTCTATGGATATCCAATCTCTTACTAGATATGGAGCGAACCGTGCTATGTTCGTATATTGCCGGAGTTAACGTCACAAAGAAATTCCCGTCGATGTCGATGGCTCCTCTTTGGAGTCTCCATCGGCTGCTGGTATCATATTCCATTGCCTTGTGGAGCAGCGTTGCTGCCTTTACTTCTTGGGACTGGCCATGA

Coding sequence (CDS)

GATCTCCTCCGTTGTGGCCCGTCTCATATTCCGTCGCCTTGTGGAGCAGCGTCGCTGCCATTACCACCTTGGACTGGCCATGAGACGAACATTTTAATTTCTCAATTCATAATTCTATGGATATCCAATCTCTTACTAGATATGGAGCGAACCGTGCTATGTTCGTATATTGCCGGAGTTAACGTCACAAAGAAATTCCCGTCGATGTCGATGGCTCCTCTTTGGAGTCTCCATCGGCTGCTGGTATCATATTCCATTGCCTTGTGGAGCAGCGTTGCTGCCTTTACTTCTTGGGACTGGCCATGA

Protein sequence

DLLRCGPSHIPSPCGAASLPLPPWTGHETNILISQFIILWISNLLLDMERTVLCSYIAGVNVTKKFPSMSMAPLWSLHRLLVSYSIALWSSVAAFTSWDWP

Homology

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BLAST of Lsi01G004850.1 vs. TrEMBL
Match: A0A0A0KQD9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G140470 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.8e-20
Identity = 54/82 (65.85%), Postives = 57/82 (69.51%), Query Frame = 1


Query: 1   DLLRCGPSHIPSPCGAASLPLPPWTGHETNILISQFIILWISNLLLDMERTVLCSYIAGV 60
           D+LRCG SHIPSPCGAASL LP WTGHETNILI  F                LCSYI GV
Sbjct: 43  DVLRCGWSHIPSPCGAASLQLPLWTGHETNILIQSF---------TRYGANALCSYITGV 102

Query: 61  NVTKKFPSMSMAPLWSLHRLLV 83
           NVTKK  SM MAP+W+LHRLLV
Sbjct: 103 NVTKKLLSMLMAPVWNLHRLLV 115

[Close]

BLAST of Lsi01G004850.1 vs. NCBI nr
Match: gi|700194744|gb|KGN49921.1| (hypothetical protein Csa_5G140470 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 5.4e-20
Identity = 54/82 (65.85%), Postives = 57/82 (69.51%), Query Frame = 1


Query: 1   DLLRCGPSHIPSPCGAASLPLPPWTGHETNILISQFIILWISNLLLDMERTVLCSYIAGV 60
           D+LRCG SHIPSPCGAASL LP WTGHETNILI  F                LCSYI GV
Sbjct: 43  DVLRCGWSHIPSPCGAASLQLPLWTGHETNILIQSF---------TRYGANALCSYITGV 102

Query: 61  NVTKKFPSMSMAPLWSLHRLLV 83
           NVTKK  SM MAP+W+LHRLLV
Sbjct: 103 NVTKKLLSMLMAPVWNLHRLLV 115

[Close]

BLAST of Lsi01G004850.1 vs. NCBI nr
Match: gi|659074301|ref|XP_008437532.1| (PREDICTED: uncharacterized protein LOC103482917 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 8.7e-10
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 1


Query: 1  DLLRCGPSHIPSPCGAASLPLPPWTGHETNILISQFIILW 41
          D+LRCG SHIPSPCGAASL LPPWTGHETNIL+ Q    W
Sbjct: 9  DVLRCGWSHIPSPCGAASLQLPPWTGHETNILVYQLQNFW 48

The following BLAST results are available for this feature:

BLAST of Lsi01G004850.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G004850.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQD9_CUCSA	3.8e-20	65.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G140470 PE=4 SV=1	[more]

BLAST of Lsi01G004850.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi01G004850.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194744\|gb\|KGN49921.1\|	5.4e-20	65.85	hypothetical protein Csa_5G140470 [Cucumis sativus]	[more]
gi\|659074301\|ref\|XP_008437532.1\|	8.7e-10	77.50	PREDICTED: uncharacterized protein LOC103482917 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi01G004850	Lsi01G004850	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi01G004850.1.CDS.1	Lsi01G004850.1.CDS.1	CDS
Lsi01G004850.1.CDS.2	Lsi01G004850.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi01G004850.1	Lsi01G004850.1-protein	polypeptide