Lsi01G004850 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G004850
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr01 : 4024891 .. 4025238 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATCTCCTCCGTTGTGGCCCGTCTCATATTCCGTCGCCTTGTGGAGCAGCGTCGCTGCCATTACCACCTTGGACTGGCCATGAGACGAACATTTTAATTTCTCAATTCATAATTCTATGGATGTTTTGTTATTGATTGTGTGTTTATGTGACGGGGGATTTTAGATCCAATCTCTTACTAGATATGGAGCGAACCGTGCTATGTTCGTATATTGCCGGAGTTAACGTCACAAAGAAATTCCCGTCGATGTCGATGGCTCCTCTTTGGAGTCTCCATCGGCTGCTGGTATCATATTCCATTGCCTTGTGGAGCAGCGTTGCTGCCTTTACTTCTTGGGACTGGCCATGA

mRNA sequence

GATCTCCTCCGTTGTGGCCCGTCTCATATTCCGTCGCCTTGTGGAGCAGCGTCGCTGCCATTACCACCTTGGACTGGCCATGAGACGAACATTTTAATTTCTCAATTCATAATTCTATGGATATCCAATCTCTTACTAGATATGGAGCGAACCGTGCTATGTTCGTATATTGCCGGAGTTAACGTCACAAAGAAATTCCCGTCGATGTCGATGGCTCCTCTTTGGAGTCTCCATCGGCTGCTGGTATCATATTCCATTGCCTTGTGGAGCAGCGTTGCTGCCTTTACTTCTTGGGACTGGCCATGA

Coding sequence (CDS)

GATCTCCTCCGTTGTGGCCCGTCTCATATTCCGTCGCCTTGTGGAGCAGCGTCGCTGCCATTACCACCTTGGACTGGCCATGAGACGAACATTTTAATTTCTCAATTCATAATTCTATGGATATCCAATCTCTTACTAGATATGGAGCGAACCGTGCTATGTTCGTATATTGCCGGAGTTAACGTCACAAAGAAATTCCCGTCGATGTCGATGGCTCCTCTTTGGAGTCTCCATCGGCTGCTGGTATCATATTCCATTGCCTTGTGGAGCAGCGTTGCTGCCTTTACTTCTTGGGACTGGCCATGA

Protein sequence

DLLRCGPSHIPSPCGAASLPLPPWTGHETNILISQFIILWISNLLLDMERTVLCSYIAGVNVTKKFPSMSMAPLWSLHRLLVSYSIALWSSVAAFTSWDWP
Homology
[Close]
BLAST of Lsi01G004850 vs. TrEMBL
Match: A0A0A0KQD9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G140470 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.8e-20
Identity = 54/82 (65.85%), Postives = 57/82 (69.51%), Query Frame = 1 

Query: 1   DLLRCGPSHIPSPCGAASLPLPPWTGHETNILISQFIILWISNLLLDMERTVLCSYIAGV 60
           D+LRCG SHIPSPCGAASL LP WTGHETNILI  F                LCSYI GV
Sbjct: 43  DVLRCGWSHIPSPCGAASLQLPLWTGHETNILIQSF---------TRYGANALCSYITGV 102

Query: 61  NVTKKFPSMSMAPLWSLHRLLV 83
           NVTKK  SM MAP+W+LHRLLV
Sbjct: 103 NVTKKLLSMLMAPVWNLHRLLV 115

[Close]
BLAST of Lsi01G004850 vs. NCBI nr
Match: gi|700194744|gb|KGN49921.1| (hypothetical protein Csa_5G140470 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 5.4e-20
Identity = 54/82 (65.85%), Postives = 57/82 (69.51%), Query Frame = 1 

Query: 1   DLLRCGPSHIPSPCGAASLPLPPWTGHETNILISQFIILWISNLLLDMERTVLCSYIAGV 60
           D+LRCG SHIPSPCGAASL LP WTGHETNILI  F                LCSYI GV
Sbjct: 43  DVLRCGWSHIPSPCGAASLQLPLWTGHETNILIQSF---------TRYGANALCSYITGV 102

Query: 61  NVTKKFPSMSMAPLWSLHRLLV 83
           NVTKK  SM MAP+W+LHRLLV
Sbjct: 103 NVTKKLLSMLMAPVWNLHRLLV 115

[Close]
BLAST of Lsi01G004850 vs. NCBI nr
Match: gi|659074301|ref|XP_008437532.1| (PREDICTED: uncharacterized protein LOC103482917 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 8.7e-10
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 1 

Query: 1  DLLRCGPSHIPSPCGAASLPLPPWTGHETNILISQFIILW 41
          D+LRCG SHIPSPCGAASL LPPWTGHETNIL+ Q    W
Sbjct: 9  DVLRCGWSHIPSPCGAASLQLPPWTGHETNILVYQLQNFW 48

The following BLAST results are available for this feature:
BLAST of Lsi01G004850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi01G004850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQD9_CUCSA3.8e-2065.85Uncharacterized protein OS=Cucumis sativus GN=Csa_5G140470 PE=4 SV=1[more]
BLAST of Lsi01G004850 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi01G004850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194744|gb|KGN49921.1|5.4e-2065.85hypothetical protein Csa_5G140470 [Cucumis sativus][more]
gi|659074301|ref|XP_008437532.1|8.7e-1077.50PREDICTED: uncharacterized protein LOC103482917 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G004850.1Lsi01G004850.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G004850ClCG01G021390Watermelon (Charleston Gray)lsiwcgB127
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G004850Bottle gourd (USVL1VR-Ls)lsilsiB064
Lsi01G004850Cucumber (Gy14) v1cgylsiB022
Lsi01G004850Cucurbita maxima (Rimu)cmalsiB367
Lsi01G004850Cucurbita maxima (Rimu)cmalsiB597
Lsi01G004850Cucurbita maxima (Rimu)cmalsiB786
Lsi01G004850Cucurbita moschata (Rifu)cmolsiB582
Lsi01G004850Cucurbita moschata (Rifu)cmolsiB774
Lsi01G004850Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G004850Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G004850Cucurbita pepo (Zucchini)cpelsiB413
Lsi01G004850Wild cucumber (PI 183967)cpilsiB019
Lsi01G004850Wild cucumber (PI 183967)cpilsiB439
Lsi01G004850Cucumber (Chinese Long) v2culsiB020
Lsi01G004850Cucumber (Chinese Long) v2culsiB434
Lsi01G004850Melon (DHL92) v3.5.1lsimeB129
Lsi01G004850Melon (DHL92) v3.5.1lsimeB149
Lsi01G004850Watermelon (97103) v1lsiwmB144
Lsi01G004850Cucumber (Gy14) v2cgyblsiB014
Lsi01G004850Cucumber (Gy14) v2cgyblsiB016
Lsi01G004850Cucumber (Gy14) v2cgyblsiB398
Lsi01G004850Melon (DHL92) v3.6.1lsimedB156
Lsi01G004850Silver-seed gourdcarlsiB364
Lsi01G004850Silver-seed gourdcarlsiB585
Lsi01G004850Cucumber (Chinese Long) v3cuclsiB017
Lsi01G004850Cucumber (Chinese Long) v3cuclsiB462
Lsi01G004850Watermelon (97103) v2lsiwmbB112
Lsi01G004850Watermelon (97103) v2lsiwmbB115
Lsi01G004850Wax gourdlsiwgoB168