Lsi01G004010.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G004010.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	F-box protein
Location	chr01 : 3434044 .. 3435195 (-)
Sequence length	1152

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATAAACGGAAAAGTGAGATTAGTAACATAAATTCGGAGCTTACAGCTGATATCGTTCAGGCAATACTCTCGAAAGTCCGCTTCTTCAATTTGCCCAGTTGCAGGCTCGTGTGTAAAGCATGGAACAATCTGGTTTTAACTTGTAAGTTTGATCCTCCAATCTTAATTTCCAACCTCTCGTTTGCCTATGATTGTCCCTCTCGCAATCTCTATTGTGTGGACTTCGATCCTAAATATTTGGAAGGAATGAGTAATTTTGTCTCATTTAGCTTCCATCCTAAATTTTCCTCCAGTTCCATCTCCATTATCAATTCCTGCACTGGACTCCTTTCTCTTCTTCTCTCGAAAAGGAAACCAGGATCACCTATATCTTATGTTCTTTGCATATTAAATCCCATGACAAACGAGTACTTCAAATTTCCCTCCGAGAAATTGAAAACACTTTGTTGTTGTGGTAGACTCTATAGCTACGGATTAGGATTCAATCCTAAAACAAAGCAGTACAAAATAGCAAGAACCTCCTTTCTACGTGACGAATCCTCTACCTCTGTAGAGATTTTTTCATTTGGCCCTACTCGCGGATGGACCCCTGTTGGGGTTTTGCCTTCTCTTGTCATTGAAGACCATGGCGTTTATTTCAATGGAGGCCTCTACTGGATTGGAAACGAGCTGCAACCACGCGATTCTACTAATGCCATTTACCGTTTGGATATAGAAAATGAGAAACTGGAGAAAATTTCATGTCCCCAATTTGGCGGTGGTCATTTTTTCTTTGGTGTTTTTGATGGCACCCTCTATCTAACTATTTTTACTGGCACCGTGGATAACAAGTACCAGATGTGGAAGATGGAAGAAAATTTTTCATGGATTAAGGCATTTGTTTTATCTAGACCAACAAATTTGCGTCATCCTGAGGATCCTCACCAACCTTGGGGAGTATCTCAGCTCCAACCCATCAAAGCTTGTGAAGATGGGAAGATATTGTGTCTTCTTGCTGGACTCCATGTAATACTGTATGACCCCAAGACTGAAAGGGTGGAGATATTGACGAATCAAGATGTCGAAATTGAGAAACATATGCACGTTCATCAGATTGACTTCTTCAATTTTAATTCTCTCCCCAACATTTTGGCAGGAAAGAGTTGA

mRNA sequence

ATGGAGAATAAACGGAAAAGTGAGATTAGTAACATAAATTCGGAGCTTACAGCTGATATCGTTCAGGCAATACTCTCGAAAGTCCGCTTCTTCAATTTGCCCAGTTGCAGGCTCGTGTGTAAAGCATGGAACAATCTGGTTTTAACTTGTAAGTTTGATCCTCCAATCTTAATTTCCAACCTCTCGTTTGCCTATGATTGTCCCTCTCGCAATCTCTATTGTGTGGACTTCGATCCTAAATATTTGGAAGGAATGAGTAATTTTGTCTCATTTAGCTTCCATCCTAAATTTTCCTCCAGTTCCATCTCCATTATCAATTCCTGCACTGGACTCCTTTCTCTTCTTCTCTCGAAAAGGAAACCAGGATCACCTATATCTTATGTTCTTTGCATATTAAATCCCATGACAAACGAGTACTTCAAATTTCCCTCCGAGAAATTGAAAACACTTTGTTGTTGTGGTAGACTCTATAGCTACGGATTAGGATTCAATCCTAAAACAAAGCAGTACAAAATAGCAAGAACCTCCTTTCTACGTGACGAATCCTCTACCTCTGTAGAGATTTTTTCATTTGGCCCTACTCGCGGATGGACCCCTGTTGGGGTTTTGCCTTCTCTTGTCATTGAAGACCATGGCGTTTATTTCAATGGAGGCCTCTACTGGATTGGAAACGAGCTGCAACCACGCGATTCTACTAATGCCATTTACCGTTTGGATATAGAAAATGAGAAACTGGAGAAAATTTCATGTCCCCAATTTGGCGGTGGTCATTTTTTCTTTGGTGTTTTTGATGGCACCCTCTATCTAACTATTTTTACTGGCACCGTGGATAACAAGTACCAGATGTGGAAGATGGAAGAAAATTTTTCATGGATTAAGGCATTTGTTTTATCTAGACCAACAAATTTGCGTCATCCTGAGGATCCTCACCAACCTTGGGGAGTATCTCAGCTCCAACCCATCAAAGCTTGTGAAGATGGGAAGATATTGTGTCTTCTTGCTGGACTCCATGTAATACTGTATGACCCCAAGACTGAAAGGGTGGAGATATTGACGAATCAAGATGTCGAAATTGAGAAACATATGCACGTTCATCAGATTGACTTCTTCAATTTTAATTCTCTCCCCAACATTTTGGCAGGAAAGAGTTGA

Coding sequence (CDS)

ATGGAGAATAAACGGAAAAGTGAGATTAGTAACATAAATTCGGAGCTTACAGCTGATATCGTTCAGGCAATACTCTCGAAAGTCCGCTTCTTCAATTTGCCCAGTTGCAGGCTCGTGTGTAAAGCATGGAACAATCTGGTTTTAACTTGTAAGTTTGATCCTCCAATCTTAATTTCCAACCTCTCGTTTGCCTATGATTGTCCCTCTCGCAATCTCTATTGTGTGGACTTCGATCCTAAATATTTGGAAGGAATGAGTAATTTTGTCTCATTTAGCTTCCATCCTAAATTTTCCTCCAGTTCCATCTCCATTATCAATTCCTGCACTGGACTCCTTTCTCTTCTTCTCTCGAAAAGGAAACCAGGATCACCTATATCTTATGTTCTTTGCATATTAAATCCCATGACAAACGAGTACTTCAAATTTCCCTCCGAGAAATTGAAAACACTTTGTTGTTGTGGTAGACTCTATAGCTACGGATTAGGATTCAATCCTAAAACAAAGCAGTACAAAATAGCAAGAACCTCCTTTCTACGTGACGAATCCTCTACCTCTGTAGAGATTTTTTCATTTGGCCCTACTCGCGGATGGACCCCTGTTGGGGTTTTGCCTTCTCTTGTCATTGAAGACCATGGCGTTTATTTCAATGGAGGCCTCTACTGGATTGGAAACGAGCTGCAACCACGCGATTCTACTAATGCCATTTACCGTTTGGATATAGAAAATGAGAAACTGGAGAAAATTTCATGTCCCCAATTTGGCGGTGGTCATTTTTTCTTTGGTGTTTTTGATGGCACCCTCTATCTAACTATTTTTACTGGCACCGTGGATAACAAGTACCAGATGTGGAAGATGGAAGAAAATTTTTCATGGATTAAGGCATTTGTTTTATCTAGACCAACAAATTTGCGTCATCCTGAGGATCCTCACCAACCTTGGGGAGTATCTCAGCTCCAACCCATCAAAGCTTGTGAAGATGGGAAGATATTGTGTCTTCTTGCTGGACTCCATGTAATACTGTATGACCCCAAGACTGAAAGGGTGGAGATATTGACGAATCAAGATGTCGAAATTGAGAAACATATGCACGTTCATCAGATTGACTTCTTCAATTTTAATTCTCTCCCCAACATTTTGGCAGGAAAGAGTTGA

Protein sequence

MENKRKSEISNINSELTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILISNLSFAYDCPSRNLYCVDFDPKYLEGMSNFVSFSFHPKFSSSSISIINSCTGLLSLLLSKRKPGSPISYVLCILNPMTNEYFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIARTSFLRDESSTSVEIFSFGPTRGWTPVGVLPSLVIEDHGVYFNGGLYWIGNELQPRDSTNAIYRLDIENEKLEKISCPQFGGGHFFFGVFDGTLYLTIFTGTVDNKYQMWKMEENFSWIKAFVLSRPTNLRHPEDPHQPWGVSQLQPIKACEDGKILCLLAGLHVILYDPKTERVEILTNQDVEIEKHMHVHQIDFFNFNSLPNILAGKS

Homology

[Close]

BLAST of Lsi01G004010.1 vs. Swiss-Prot
Match: FB153_ARATH (Putative F-box protein At3g17490 OS=Arabidopsis thaliana GN=At3g17490 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-06
Identity = 78/324 (24.07%), Postives = 122/324 (37.65%), Query Frame = 1


Query: 16  LTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPP---------ILISNLSFAYD 75
           L+ D+V+ ILS+V   +L   R  CK WN L    +F            + ++   F   
Sbjct: 6   LSEDLVEEILSRVPAISLKRLRYTCKQWNALFNDQRFSKKHRDKAPKTYLGLTLKDFRIY 65

Query: 76  CPSRNLYCVDFDPKYLEGMSNFVSFSFHPKFSSSS------ISIINSCTGLLSLLLSKRK 135
             S NL+ +      L   +  +   F  K SS +      IS I  C GL+ L  +KR 
Sbjct: 66  SMSSNLHGL------LHNNNIDLLMEFKGKLSSLNDLNDFEISQIYPCDGLI-LCSTKRN 125

Query: 136 PGSPISYVLCILNPMTNE--YFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIARTSFL 195
                   L + NP T +  + K  + ++    C    + Y    +     YKI R    
Sbjct: 126 TR------LVVWNPCTGQTRWIKRRNRRM----CDTFAFGYDNSKSSCLNNYKILRVCEK 185

Query: 196 RDESSTSVEIFSFGPTRGWTPVGVLPSLVIEDHGVYFNGGLYWIGNELQPRDSTNAIYRL 255
                   EIF F  +  W  + V P+ +IE   V   G  YW     +   +   I R 
Sbjct: 186 IKGQQFEYEIFEFS-SNSWRVLDVNPNCIIEGRSVSVKGNSYWFATITK---THYFIRRF 245

Query: 256 DIENEKLEKISCPQFGGGHFFFGVFD----------GTLYLTIFTGTVD-NKYQMW---K 307
           D  +E  +K+  P        F +FD              L++   + D  K  +W   K
Sbjct: 246 DFSSETFQKLPLP--------FHIFDYNDSRALSAFREEQLSVLHQSFDTEKMDIWVTNK 300

[Close]

BLAST of Lsi01G004010.1 vs. TrEMBL
Match: A0A0A0KJY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G515480 PE=4 SV=1)

HSP 1 Score: 593.2 bits (1528), Expect = 2.3e-166
Identity = 290/389 (74.55%), Postives = 328/389 (84.32%), Query Frame = 1


Query: 1   MENKRKSEISNI-NSELTAD-IVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILI 60
           ME K K EI  + NSE   D I+Q ILSKV  FNL SCRLVCK+WNNL+LTCKFDP +  
Sbjct: 1   MEKKWKGEIKKLSNSEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLILTCKFDPSLF- 60

Query: 61  SNLSFAYDCPSRNLYCVDFDPKYLEGMSNFVSFSFHPKFSSS--SISIINSCTGLLSLLL 120
             LSFAYDCPSR LYCVDFDP Y EGM++  SF+FHPKFS+S  SISIIN+C GLLSLL+
Sbjct: 61  --LSFAYDCPSRTLYCVDFDPMYFEGMNSIGSFTFHPKFSTSDSSISIINACNGLLSLLI 120

Query: 121 SKRKPGSPISYVLCILNPMTNEYFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIARTS 180
           SKRK GS +SYVL ILNPMTNEYFKFP+EK K+ CCCGRLYSYGLGFNPKTKQYKIARTS
Sbjct: 121 SKRKLGS-VSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTS 180

Query: 181 FLRDESSTSVEIFSFGPTRG-WTPVGVLPSLVIEDHGVYFNGGLYWIGNELQPRDST-NA 240
           F  DES+T VEIF+FG T   WTPVG LPSLV+EDHGVYF GGLYW+ N+  P DS+ +A
Sbjct: 181 FRPDESTTLVEIFTFGSTHQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSISA 240

Query: 241 IYRLDIENEKLEKISCPQFGGGHFFFGVFDGTLYLTIFTGTVDNKYQMWKMEENFSWIKA 300
           IYRLD+ENEKLEKISCPQ+ GGHFFFGVFDGTLYLT+   + +NKYQ+WKM++NFSWIKA
Sbjct: 241 IYRLDLENEKLEKISCPQYIGGHFFFGVFDGTLYLTV---SKNNKYQVWKMKDNFSWIKA 300

Query: 301 FVLSRPTNLRHPEDPHQPWGVSQLQPIKACEDGKILCLLAGLHVILYDPKTERVEILTNQ 360
           FV+SRP NL HP+ PHQPWGVSQL PIKACEDGKILCLLAGLH+ILYDPKT+  EILT+Q
Sbjct: 301 FVISRPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKSAEILTDQ 360

Query: 361 DVEIEKHMHVHQIDFFNFNSLPNILAGKS 384
            V++EKH+HVH ID FNFNSLP+ILAG S
Sbjct: 361 SVKVEKHLHVHHIDAFNFNSLPSILAGNS 382

[Close]

BLAST of Lsi01G004010.1 vs. TrEMBL
Match: A0A0A0M1M5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G572960 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 6.3e-108
Identity = 214/392 (54.59%), Postives = 268/392 (68.37%), Query Frame = 1


Query: 1   MENKRKSEISNINSELTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILISN 60
           ME K K+ I N  SEL  D++Q I SK+ FFNLP+CRLV   WNNL+ +CKFDP I IS+
Sbjct: 1   MEKKPKTNIVNKRSELPPDVLQLIFSKLPFFNLPTCRLVSTTWNNLISSCKFDPSISISH 60

Query: 61  LSFAYDCPSR--NLYCVDFDPKYLEGMSNFVSFSFHPKFSSSS--ISIINSCTGLLSLLL 120
           L FA    SR  NL+CV+FDP++ EGMS   SF+FHP  SS S  I+IINSC+GL+SL++
Sbjct: 61  LFFARFYSSRHPNLHCVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINSCSGLISLII 120

Query: 121 SKRKPGSPISYVLCILNPMTNEYFKFPSEKLKTLCCCGRL--YSYGLGFNPKTKQYKIAR 180
           +KR+       ++C+LNP+TNEYFK P+ + K      R+  Y YGLGF+P T QYK+AR
Sbjct: 121 NKRRRRGHRLDLVCVLNPITNEYFKLPTSRSKG----DRVPNYCYGLGFSPTTNQYKLAR 180

Query: 181 TSFLRDESSTSVEIFSFGPTRGWTPVGVLPSLVIEDHGVYFNGGLYWIGNELQPR----D 240
           T F  DE    V+IF+FG +  WTPVG +P+ + E HGVY NGGLYW+G++  P     D
Sbjct: 181 THFTHDEFI--VDIFAFGTSCEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQKLPNGGISD 240

Query: 241 STNAIYRLDIENEKLEKISCPQFGGGHFFFGVFDGTLYLTIFTGTVDNKYQMWKMEENFS 300
            T  IYRLD+++EK EKIS P  GG   +  V++GTLYLT      D  Y  WKMEE+FS
Sbjct: 241 YTEVIYRLDLKDEKFEKISFPLDGGDDPYIAVYNGTLYLTFCCEDFD--YHAWKMEEDFS 300

Query: 301 WIKAFVLSRPTNLRHPEDPHQPWGVSQLQPIKACEDGKILCLLAGLHVILYDPKTERVEI 360
           W K FVL+ P N+ H    H P G   LQ IK CEDG ILCL AG+ +ILYDP T+ VEI
Sbjct: 301 WSKEFVLALPENVHHSLR-HHPIGY-YLQLIKFCEDGNILCLYAGILLILYDPSTQTVEI 360

Query: 361 LTNQDVEIEKHMHVHQIDFFNFNSLPNILAGK 383
           LTNQD EI++ M VHQI+ F+FNSL NILAGK
Sbjct: 361 LTNQDFEIKEAMWVHQIESFSFNSLHNILAGK 382

[Close]

BLAST of Lsi01G004010.1 vs. TrEMBL
Match: A0A0A0LCB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G836440 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 154/432 (35.65%), Postives = 217/432 (50.23%), Query Frame = 1


Query: 5   RKSEISNINSELTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILISNLSFA 64
           RKS   N N +L + I++ I+SK+    L + R VCKAWNN++LT K       +NL FA
Sbjct: 4   RKSRGRNQNPQLPSHIIETIISKLSVSVLLNLRRVCKAWNNIILTGKLLHLNSKANL-FA 63

Query: 65  YDCPSRNLYCVDFDPKYL-EGMSNFV--SFSFHPKFSSSSISIINSCTGLLSLLLSK--R 124
           +  P + L+C+DFD K L E   N +  SF+FHP F  S+  IINSC GLL  + SK   
Sbjct: 64  HIPPHQMLHCIDFDSKTLKEKKINCIVGSFTFHPHF--STFKIINSCNGLLCFVNSKIMS 123

Query: 125 KPGSPISYVL-----CILNPMTNEYFKFP-SEKLKTLCCCGRLYSYGLGFNPKTKQYKIA 184
           K    I + L      IL+P+TNEY + P ++  K     G  YS+G G++P  KQYKI 
Sbjct: 124 KEHEKIGFELTQPFAIILSPITNEYVELPLNDAWKKTFYTG--YSFGFGYSPNKKQYKIV 183

Query: 185 RTSFLRDESSTSVEIFSFGP-TRG----WTPVGVLPSLVI--EDHGVYFNGGLYW---IG 244
           + S +R       +IF+ G  TRG    W+ V +L    +     GVY NG LYW    G
Sbjct: 184 KLSSIR-RGLYVADIFTIGTFTRGSYGKWSRVPILIRFCVLGSGDGVYLNGSLYWNGYNG 243

Query: 245 NELQPRDSTNAI-YRLDIENEKLEKISCPQFGGGHFFFG-----VFDGTLYLTIFTGTVD 304
           N L  R+    +  R D+E+EK E +S P       F G     +F+ TLYL+ F    +
Sbjct: 244 NYLDMRNGGKVVLLRFDVEDEKFEVVSFPHGVEDEVFRGSSNIWIFNNTLYLSCFDFNTN 303

Query: 305 N---KYQMWK-MEENFSWIKAFVLSRPTNLRHPEDPHQPWGVSQL--------------- 364
           N   ++ +WK MEE +SW K   L +   +R P   H  W    L               
Sbjct: 304 NGIGRFHVWKLMEEGYSWFK---LEQEFVIRQPISNH--WSTVALLHYIRYLKYRGYYDF 363

Query: 365 ---------QPIKACEDGKILCLLAGLHVILYDPKTERVEILTNQ-DVEIEKHMHVHQID 380
                    Q IK  ED K+L L++   +ILYD KTE+ E+  N  + + +  + ++ ID
Sbjct: 364 SSSCTRYHFQLIKVFEDEKMLFLISRKALILYDSKTEQFEVTYNDLNQDQDGKLWIYDID 423

[Close]

BLAST of Lsi01G004010.1 vs. TrEMBL
Match: A0A0A0LCZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G836430 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.8e-42
Identity = 138/426 (32.39%), Postives = 212/426 (49.77%), Query Frame = 1


Query: 1   MENKRKSEISNINSELTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILISN 60
           M+++R+S+    N +  + I++ ILSK+ FF L + R VCKAWNNL+LT K       +N
Sbjct: 1   MKSRRRSQ----NPQFPSHIIETILSKLSFFILLNLRPVCKAWNNLILTSKLLNLNSKAN 60

Query: 61  LSFAYDCPSRNLYCVDFDPKYL-EGMSNFV--SFSFHPKFSSSSISIINSCTGLLSLLLS 120
           L FA+  P + LYC+DFD K L EG  N +  SF+FHP+F   +  ++NSC GL   + +
Sbjct: 61  L-FAHITPYQKLYCIDFDSKILKEGKKNCIVRSFTFHPRF--FTFKMVNSCNGLFCFVNT 120

Query: 121 -------KRKPGSPISYVLCILNPMTNEYFKFPSEKLKTLCCCGRLY---SYGLGFNPKT 180
                  ++K       +  ILNPMTNE     +          + Y   S+G G++P  
Sbjct: 121 EMISDQCEKKSFGLKQPLAIILNPMTNEELSLNNSL--------KFYPGSSFGFGYSPNK 180

Query: 181 KQYKIARTSFLRD------------ESSTSVEIFSFGP-TRG----WTPVGVLPSLVIED 240
           KQYKI + S ++              SS   EIF+ G   RG    W    V    V+  
Sbjct: 181 KQYKIVKLSLIKIPHLRSSYVASHLRSSYVAEIFTIGKFARGRHGKWRQNRVPAVRVLWS 240

Query: 241 HGVYFNGGLYWIGNELQPRDSTNAIYRLDIENEKLEKISCPQFGGGHFF-----FGVFDG 300
            GVY NG LYW         +   + R D+E+EK E +S PQ      F       +F+ 
Sbjct: 241 FGVYLNGSLYWKAYNTTRIRANAVLLRFDVEDEKFEVVSFPQVVRDDAFLISSNIWIFNN 300

Query: 301 TLYLTIFTGTVD-NKYQMWK-MEENFSWIKAFVLSRPTNLRHPEDPHQPWGVSQL----- 360
           TLY++ F   +D   + +WK MEE++SW+K  +  +   ++  +D      VS +     
Sbjct: 301 TLYVSYFDSKIDMGSFHVWKMMEEDYSWVK--LEQKFAIMKSIKDHFSLMMVSYIRDYMI 360

Query: 361 ----QPIKACEDGKILCLLAGLHVILYDPKTERVEILTNQ-DVEIEKHMHVHQIDFFNFN 380
               Q IK  ED  +L L++   +ILYD K ++ E + ++ + + +  + +H+ID  NF+
Sbjct: 361 RCHFQLIKVFEDETMLFLISQRALILYDSKIDQFEAVHDELNQDQDGKLCIHEIDSLNFD 409

[Close]

BLAST of Lsi01G004010.1 vs. TrEMBL
Match: A0A0A0K9K4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G093600 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39
Identity = 121/377 (32.10%), Postives = 182/377 (48.28%), Query Frame = 1


Query: 11  NINSELTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILISNLSFAYDCPSR 70
           +INS+L + I++ I SK+   N    R VCK WN L+L C+       S L   +     
Sbjct: 2   SINSQLPSHIIEEIFSKISTVNFSFFRAVCKDWNRLILNCRISSS---STLFITWRPLQP 61

Query: 71  NLYCVDFDPKYLEGMSNFVSFSFHPKFSSSSISIINSCTGLLSLLLSKRKPGSPISYVLC 130
            + CVDF  K+ +GM+   SF+F    SS +  I NSC GLL ++  +       SYV  
Sbjct: 62  RMDCVDFHHKFSQGMNVLSSFTFDFPISSDT-QITNSCNGLLCII--EENKYYKTSYVAT 121

Query: 131 ILNPMTNEYFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIARTSFLRDESSTSVEIFS 190
           I+NPMTNEY   P      L      + +GLGF+ K+ +YK AR   ++  +   +EI +
Sbjct: 122 IINPMTNEYVTLPGYNEYCL-----YFGFGLGFSSKSNEYKFARIFLVK--NICGLEILT 181

Query: 191 FGPTRGWTPVGVLPSLVI-EDHGVYFNGGLYWIGNELQPRDSTNAIYRLDIENEKLEKIS 250
            G +  W  V  LP L I ++ G+YFNG LYWI  +   +D    +  LD+E E    I 
Sbjct: 182 LGKSNEWRHVSYLPILYIDQEDGIYFNGVLYWICID---KDKKIKMLCLDVEEESFSIID 241

Query: 251 CPQFGGGHFFFGVFDGTLYLTIF-----TGTVDNKYQMWKM---EENFSWIKAFVLSRPT 310
            P+          FD  +Y++I       G  + + ++WK+     N  W   FV++   
Sbjct: 242 IPKLANS-AIVDAFDDGIYVSIIDEEEEVGEHEKQVEVWKLGSCASNGLWTLWFVVNISA 301

Query: 311 NLRHPEDPHQPWGVSQLQPIKACEDGKILCLLAGLHVILYDPKTERVEILTNQDVEIEKH 370
            +      +  W    L+ IK CE G+I  LL   +++LYD KT+++  +     E E  
Sbjct: 302 CVPLFYLDNILWKGCSLKIIKICESGEIFFLLEEQYLLLYDLKTQKITKIH----ETEDS 357

Query: 371 MHVHQIDFFNFNSLPNI 379
             V +I   +FNSL  I
Sbjct: 362 FSVFEIKSPSFNSLRTI 357

[Close]

BLAST of Lsi01G004010.1 vs. TAIR10
Match: AT3G17490.1 (AT3G17490.1 F-box and associated interaction domains-containing protein)

HSP 1 Score: 55.5 bits (132), Expect = 8.6e-08
Identity = 78/324 (24.07%), Postives = 122/324 (37.65%), Query Frame = 1


Query: 16  LTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPP---------ILISNLSFAYD 75
           L+ D+V+ ILS+V   +L   R  CK WN L    +F            + ++   F   
Sbjct: 6   LSEDLVEEILSRVPAISLKRLRYTCKQWNALFNDQRFSKKHRDKAPKTYLGLTLKDFRIY 65

Query: 76  CPSRNLYCVDFDPKYLEGMSNFVSFSFHPKFSSSS------ISIINSCTGLLSLLLSKRK 135
             S NL+ +      L   +  +   F  K SS +      IS I  C GL+ L  +KR 
Sbjct: 66  SMSSNLHGL------LHNNNIDLLMEFKGKLSSLNDLNDFEISQIYPCDGLI-LCSTKRN 125

Query: 136 PGSPISYVLCILNPMTNE--YFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIARTSFL 195
                   L + NP T +  + K  + ++    C    + Y    +     YKI R    
Sbjct: 126 TR------LVVWNPCTGQTRWIKRRNRRM----CDTFAFGYDNSKSSCLNNYKILRVCEK 185

Query: 196 RDESSTSVEIFSFGPTRGWTPVGVLPSLVIEDHGVYFNGGLYWIGNELQPRDSTNAIYRL 255
                   EIF F  +  W  + V P+ +IE   V   G  YW     +   +   I R 
Sbjct: 186 IKGQQFEYEIFEFS-SNSWRVLDVNPNCIIEGRSVSVKGNSYWFATITK---THYFIRRF 245

Query: 256 DIENEKLEKISCPQFGGGHFFFGVFD----------GTLYLTIFTGTVD-NKYQMW---K 307
           D  +E  +K+  P        F +FD              L++   + D  K  +W   K
Sbjct: 246 DFSSETFQKLPLP--------FHIFDYNDSRALSAFREEQLSVLHQSFDTEKMDIWVTNK 300

[Close]

BLAST of Lsi01G004010.1 vs. TAIR10
Match: AT1G60370.1 (AT1G60370.1 F-box and associated interaction domains-containing protein)

HSP 1 Score: 49.3 bits (116), Expect = 6.2e-06
Identity = 48/179 (26.82%), Postives = 78/179 (43.58%), Query Frame = 1


Query: 87  NFVSFSFHPKFSSSSISIINSCTGLLSLLLSKRKPGSPISYVLCILNPMTNEYFKFPSEK 146
           +FV   FH KFS S+    +SC+GL+   + K     P+     + NP T +Y   P   
Sbjct: 88  SFVVADFHMKFSVSTFPDFHSCSGLIHFSMMKGAYTVPV-----VCNPRTGQYAVLPK-- 147

Query: 147 LKTLCCCGRLYSYGLGFNPKTKQYKIARTSFLRD-ESSTSVEIFSFGPTRGWTPVGVLPS 206
             T       YS+ +G++P  KQ K+    F+ D +S     I + G T       +  S
Sbjct: 148 -LTRTRYENSYSF-VGYDPIEKQIKVL---FMSDPDSGDDHRILTLGTTEKMLGRKIECS 207

Query: 207 L---VIEDHGVYFNGGLYWIGNEL-QPRDSTNAIYRLDIENEKLEKISCPQFGGGHFFF 261
           L   ++ + GV  NG LY+  + + +     +     D ++E+ + I C  F    F F
Sbjct: 208 LTHNILSNEGVCINGVLYYKASRIVESSSDDDTSDDDDDDHERSDVIVCFDFRCEKFEF 254

[Close]

BLAST of Lsi01G004010.1 vs. TAIR10
Match: AT2G04920.1 (AT2G04920.1 F-box and associated interaction domains-containing protein)

HSP 1 Score: 49.3 bits (116), Expect = 6.2e-06
Identity = 66/256 (25.78%), Postives = 102/256 (39.84%), Query Frame = 1


Query: 14  SELTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILI-----SNLSFAYD-- 73
           S+L  D+V+ ILS+V   +L   R  CK WN+L    +F           S++    D  
Sbjct: 2   SDLPPDLVEDILSRVPATSLKRLRFTCKQWNSLFKNRRFTEKHFCKAPKQSHVLLWKDYT 61

Query: 74  -CP-SRNLYCVDFDPKYLEGMSNFVSFSFHPKFSSSSISIINSCTGLLSLLLSKRKPGSP 133
            CP S NL   +F    +E  S       H       I+ +  C GLL L  +K      
Sbjct: 62  VCPMSINL---NFSGSSIEFKSVLSLKDSHYNSEQVYIAKVFHCDGLL-LCTTK------ 121

Query: 134 ISYVLCILNPMTNE--YFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIAR--TSFLR- 193
             + L + NP   E  +  F ++           +S G   N   + YKI R  TS+L  
Sbjct: 122 -DHRLLVWNPCLGETRWINFENDYKPY-----SRFSLGYKNNKSCRSYKILRFWTSYLTP 181

Query: 194 DESSTSVEIFSFGPTRGW----TPVGVLPSLVIEDHGVYFNGGLYWIGNELQPRDSTNAI 252
           +       I+ F  T  W      V +   L+  ++GV F G  YW+  +    + TN +
Sbjct: 182 NHIGLRYNIYEF-TTDSWRVLIDKVSLNYFLIESENGVSFKGNTYWLALD----EETNFL 236

[Close]

BLAST of Lsi01G004010.1 vs. NCBI nr
Match: gi|449433922|ref|XP_004134745.1| (PREDICTED: F-box protein At3g07870-like [Cucumis sativus])

HSP 1 Score: 593.2 bits (1528), Expect = 3.3e-166
Identity = 290/389 (74.55%), Postives = 328/389 (84.32%), Query Frame = 1


Query: 1   MENKRKSEISNI-NSELTAD-IVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILI 60
           ME K K EI  + NSE   D I+Q ILSKV  FNL SCRLVCK+WNNL+LTCKFDP +  
Sbjct: 1   MEKKWKGEIKKLSNSEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLILTCKFDPSLF- 60

Query: 61  SNLSFAYDCPSRNLYCVDFDPKYLEGMSNFVSFSFHPKFSSS--SISIINSCTGLLSLLL 120
             LSFAYDCPSR LYCVDFDP Y EGM++  SF+FHPKFS+S  SISIIN+C GLLSLL+
Sbjct: 61  --LSFAYDCPSRTLYCVDFDPMYFEGMNSIGSFTFHPKFSTSDSSISIINACNGLLSLLI 120

Query: 121 SKRKPGSPISYVLCILNPMTNEYFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIARTS 180
           SKRK GS +SYVL ILNPMTNEYFKFP+EK K+ CCCGRLYSYGLGFNPKTKQYKIARTS
Sbjct: 121 SKRKLGS-VSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTS 180

Query: 181 FLRDESSTSVEIFSFGPTRG-WTPVGVLPSLVIEDHGVYFNGGLYWIGNELQPRDST-NA 240
           F  DES+T VEIF+FG T   WTPVG LPSLV+EDHGVYF GGLYW+ N+  P DS+ +A
Sbjct: 181 FRPDESTTLVEIFTFGSTHQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSISA 240

Query: 241 IYRLDIENEKLEKISCPQFGGGHFFFGVFDGTLYLTIFTGTVDNKYQMWKMEENFSWIKA 300
           IYRLD+ENEKLEKISCPQ+ GGHFFFGVFDGTLYLT+   + +NKYQ+WKM++NFSWIKA
Sbjct: 241 IYRLDLENEKLEKISCPQYIGGHFFFGVFDGTLYLTV---SKNNKYQVWKMKDNFSWIKA 300

Query: 301 FVLSRPTNLRHPEDPHQPWGVSQLQPIKACEDGKILCLLAGLHVILYDPKTERVEILTNQ 360
           FV+SRP NL HP+ PHQPWGVSQL PIKACEDGKILCLLAGLH+ILYDPKT+  EILT+Q
Sbjct: 301 FVISRPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKSAEILTDQ 360

Query: 361 DVEIEKHMHVHQIDFFNFNSLPNILAGKS 384
            V++EKH+HVH ID FNFNSLP+ILAG S
Sbjct: 361 SVKVEKHLHVHHIDAFNFNSLPSILAGNS 382

[Close]

BLAST of Lsi01G004010.1 vs. NCBI nr
Match: gi|659078870|ref|XP_008439950.1| (PREDICTED: putative F-box protein At3g21120 [Cucumis melo])

HSP 1 Score: 586.3 bits (1510), Expect = 4.0e-164
Identity = 290/389 (74.55%), Postives = 323/389 (83.03%), Query Frame = 1


Query: 1   MENKRKSEISNI-NSELTAD-IVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILI 60
           ME K K EI  + NSE   D I+Q ILSKV  FNL SCRLVCK+WNNLVLTCKFDP + I
Sbjct: 1   MEKKWKGEIKKLSNSEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLVLTCKFDPSLFI 60

Query: 61  SNLSFAYDCPSRNLYCVDFDPKYLEGMSNFVSFSFHPKFS--SSSISIINSCTGLLSLLL 120
           S    AYDCPSR LYCVDFDP Y EGM++  SFSFHPKFS  SSSISIIN+C GLLSLL+
Sbjct: 61  S---LAYDCPSRTLYCVDFDPMYSEGMNSVGSFSFHPKFSTSSSSISIINACNGLLSLLI 120

Query: 121 SKRKPGSPISYVLCILNPMTNEYFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIARTS 180
           SKRKPGS +SYVL ILNPMTNEYFKFP+EK K+ CCCGRLYSYGLGFNPK KQYKIARTS
Sbjct: 121 SKRKPGS-VSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIARTS 180

Query: 181 FLRDESSTSVEIFSFGPT-RGWTPVGVLPSLVIEDHGVYFNGGLYWIGNELQPRDST-NA 240
           F  DES+T VEIF+FG   + WT VG LPSLV+EDHGVYFNGGLYW+ N+  P DS+ + 
Sbjct: 181 FRPDESTTLVEIFAFGSIYQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSIST 240

Query: 241 IYRLDIENEKLEKISCPQFGGGHFFFGVFDGTLYLTIFTGTVDNKYQMWKMEENFSWIKA 300
           IYRLDIENE LEKISCPQ  GGHFFFGVFDGTLYLT+   + +NKYQ+WKM++NFSWIKA
Sbjct: 241 IYRLDIENENLEKISCPQHLGGHFFFGVFDGTLYLTV---SKNNKYQVWKMKDNFSWIKA 300

Query: 301 FVLSRPTNLRHPEDPHQPWGVSQLQPIKACEDGKILCLLAGLHVILYDPKTERVEILTNQ 360
           FV+S P NL HP+ PHQPWGVSQL PIKACEDGKILCLLAGLH+ILYDPKT+  EILT+Q
Sbjct: 301 FVISSPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKSAEILTDQ 360

Query: 361 DVEIEKHMHVHQIDFFNFNSLPNILAGKS 384
            V++EKH+HVH ID FNFNSLPNILAG S
Sbjct: 361 SVKVEKHLHVHHIDSFNFNSLPNILAGNS 382

[Close]

BLAST of Lsi01G004010.1 vs. NCBI nr
Match: gi|449436028|ref|XP_004135796.1| (PREDICTED: putative F-box protein At1g46984 [Cucumis sativus])

HSP 1 Score: 399.1 bits (1024), Expect = 9.0e-108
Identity = 214/392 (54.59%), Postives = 268/392 (68.37%), Query Frame = 1


Query: 1   MENKRKSEISNINSELTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILISN 60
           ME K K+ I N  SEL  D++Q I SK+ FFNLP+CRLV   WNNL+ +CKFDP I IS+
Sbjct: 1   MEKKPKTNIVNKRSELPPDVLQLIFSKLPFFNLPTCRLVSTTWNNLISSCKFDPSISISH 60

Query: 61  LSFAYDCPSR--NLYCVDFDPKYLEGMSNFVSFSFHPKFSSSS--ISIINSCTGLLSLLL 120
           L FA    SR  NL+CV+FDP++ EGMS   SF+FHP  SS S  I+IINSC+GL+SL++
Sbjct: 61  LFFARFYSSRHPNLHCVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINSCSGLISLII 120

Query: 121 SKRKPGSPISYVLCILNPMTNEYFKFPSEKLKTLCCCGRL--YSYGLGFNPKTKQYKIAR 180
           +KR+       ++C+LNP+TNEYFK P+ + K      R+  Y YGLGF+P T QYK+AR
Sbjct: 121 NKRRRRGHRLDLVCVLNPITNEYFKLPTSRSKG----DRVPNYCYGLGFSPTTNQYKLAR 180

Query: 181 TSFLRDESSTSVEIFSFGPTRGWTPVGVLPSLVIEDHGVYFNGGLYWIGNELQPR----D 240
           T F  DE    V+IF+FG +  WTPVG +P+ + E HGVY NGGLYW+G++  P     D
Sbjct: 181 THFTHDEFI--VDIFAFGTSCEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQKLPNGGISD 240

Query: 241 STNAIYRLDIENEKLEKISCPQFGGGHFFFGVFDGTLYLTIFTGTVDNKYQMWKMEENFS 300
            T  IYRLD+++EK EKIS P  GG   +  V++GTLYLT      D  Y  WKMEE+FS
Sbjct: 241 YTEVIYRLDLKDEKFEKISFPLDGGDDPYIAVYNGTLYLTFCCEDFD--YHAWKMEEDFS 300

Query: 301 WIKAFVLSRPTNLRHPEDPHQPWGVSQLQPIKACEDGKILCLLAGLHVILYDPKTERVEI 360
           W K FVL+ P N+ H    H P G   LQ IK CEDG ILCL AG+ +ILYDP T+ VEI
Sbjct: 301 WSKEFVLALPENVHHSLR-HHPIGY-YLQLIKFCEDGNILCLYAGILLILYDPSTQTVEI 360

Query: 361 LTNQDVEIEKHMHVHQIDFFNFNSLPNILAGK 383
           LTNQD EI++ M VHQI+ F+FNSL NILAGK
Sbjct: 361 LTNQDFEIKEAMWVHQIESFSFNSLHNILAGK 382

[Close]

BLAST of Lsi01G004010.1 vs. NCBI nr
Match: gi|659099669|ref|XP_008450717.1| (PREDICTED: putative F-box only protein 9 [Cucumis melo])

HSP 1 Score: 394.4 bits (1012), Expect = 2.2e-106
Identity = 205/388 (52.84%), Postives = 270/388 (69.59%), Query Frame = 1


Query: 4   KRKSEISNINSELTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILISNLSF 63
           K K+ I N + EL  DI+Q I SK+ FFNLP+CRLV + WNNL+ +CKFDP   I +L F
Sbjct: 3   KPKTNIINKSYELPPDILQQIFSKIPFFNLPTCRLVSRTWNNLISSCKFDPSTSIYHLFF 62

Query: 64  A--YDCPSRNLYCVDFDPKYLEGMSNFVSFSFHPKFSSSS--ISIINSCTGLLSLLLSKR 123
           A  Y    RNL+CV+FDP+++EGMS   SF+FHP F S+S  I+IINSC+GL+SLL++KR
Sbjct: 63  ARFYSSRHRNLHCVEFDPQHVEGMSIVASFAFHPDFCSASSRITIINSCSGLISLLITKR 122

Query: 124 KPGSPISYVLCILNPMTNEYFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIARTSFLR 183
           +       V+C+LNP+TNEYFK P+ +LK        Y YGLGF+PKT QYK+ART F  
Sbjct: 123 RRRGQRRDVVCVLNPITNEYFKHPNLRLKGDKVPN--YCYGLGFSPKTNQYKLARTHFAH 182

Query: 184 DESSTSVEIFSFGPTRGWTPVGVLPSLVIEDHGVYFNGGLYWIGNELQP-----RDSTNA 243
           +E    V+IF+FG +  WTP+G +P+ + E HGVYFNGGLYW+G++ Q       D T  
Sbjct: 183 NEFI--VDIFAFGTSCEWTPIGSVPNFLNEYHGVYFNGGLYWVGSQKQLPNGGLSDYTGV 242

Query: 244 IYRLDIENEKLEKISCPQFGGGHFFFGVFDGTLYLTIFTGTVDNKYQMWKMEENFSWIKA 303
           +YRLD+ +EK +KIS P FGG   + GV++GTLYLT+     D  Y +WKM+E+FSW K 
Sbjct: 243 VYRLDLNDEKFKKISIP-FGGDEPYVGVYNGTLYLTLCCEDFD--YHVWKMKEDFSWSKE 302

Query: 304 FVLSRPTNLRHPEDPHQPWGVSQLQPIKACEDGKILCLLAGLHVILYDPKTERVEILTNQ 363
           FVL+ P N+ H    H P G   LQ +K CEDG ILCL AG+ +I+YDPKT+++EILT+Q
Sbjct: 303 FVLALPENILHSLHRHHPIGY-YLQLVKFCEDGSILCLCAGILLIVYDPKTQQMEILTDQ 362

Query: 364 DVEIEKHMHVHQIDFFNFNSLPNILAGK 383
           D EI++ M  HQI+ F+FNSL N L GK
Sbjct: 363 DFEIKEGMWFHQIESFSFNSLHNTLTGK 382

[Close]

BLAST of Lsi01G004010.1 vs. NCBI nr
Match: gi|659066492|ref|XP_008447090.1| (PREDICTED: putative F-box protein At3g52320 [Cucumis melo])

HSP 1 Score: 218.0 bits (554), Expect = 2.8e-53
Identity = 141/391 (36.06%), Postives = 200/391 (51.15%), Query Frame = 1


Query: 12  INSELTADIVQAILSKVR-FFNLPSCRLVCKAWNNLVLTCKFDPPILISNLSFAYDCPSR 71
           I+SEL +DI+  IL  ++ F  L +CRLV K WN  + + KFD  + I+ +S        
Sbjct: 9   IDSELPSDILLQILLLLQPFSKLFTCRLVSKNWNKCISSFKFDSNLFITQISRCRRRSRN 68

Query: 72  NLYCVDFDPKYLEGMSNFVSFSFHPKFSSSSISIINSCTGLLSLLLSKRKPGSPISYVLC 131
            L+CVD +P   EG++   SF  HP +SSSS  I+N C GLL +L  KR         + 
Sbjct: 69  RLHCVDLNPNRSEGVNLVGSFKLHPSWSSSSTGIVNICNGLLCILNGKR---------VA 128

Query: 132 ILNPMTNEYFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIARTSFLRDESSTSVEIFS 191
           ILNPMTNEY + PS              YGLG++PKTKQYK+AR SF  DE    VEI +
Sbjct: 129 ILNPMTNEYMELPSRTEYQSSV------YGLGYSPKTKQYKVARHSFKNDE--LFVEILA 188

Query: 192 FGPTRG------------WTPV-GVLPSLVIEDHGVYFNGGLYWIGNELQPRDSTNAIY- 251
           F  +              W  V  +  +  +  HG YFNG +YW+G   +   S   +Y 
Sbjct: 189 FDTSLADQDGNQNEVQSQWRHVVSISTTYKMHRHGTYFNGAIYWVGEGERSDSSAKNVYV 248

Query: 252 --RLDIENEKLEKISCPQFGG---GHFFFGVFDGTLYLTIFTGTVDNKYQMWKMEENFSW 311
             RL++ NEK E++  P+ G       + GVF+G LYL+ +  T D+ Y +  M     W
Sbjct: 249 LWRLNVTNEKFEELWLPEIGSIWKHTSYCGVFNGKLYLSHYV-TADSMYHVLMMNGKGLW 308

Query: 312 IKAFVLSRPTNLRHPEDPHQPWGVSQLQPIKACEDGKILCLLAGLHVILYDPKTERVEIL 371
              F +S P   +           +  Q IK  + GKILCL     ++L+D K+ ++E L
Sbjct: 309 ETPFFISIPRFYKGSTRLES----NHFQLIKPWKKGKILCLFYSFLLVLFDTKSGKLEKL 368

Query: 372 TNQDVEIEKHMHVHQIDFFNFNSLPNILAGK 383
              + E++K   +  +D  +F SLPNILAGK
Sbjct: 369 DYVEEEVKKSFRICHMDSIHFGSLPNILAGK 377

The following BLAST results are available for this feature:

BLAST of Lsi01G004010.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB153_ARATH	1.5e-06	24.07	Putative F-box protein At3g17490 OS=Arabidopsis thaliana GN=At3g17490 PE=3 SV=1	[more]

BLAST of Lsi01G004010.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJY9_CUCSA	2.3e-166	74.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G515480 PE=4 SV=1	[more]
A0A0A0M1M5_CUCSA	6.3e-108	54.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G572960 PE=4 SV=1	[more]
A0A0A0LCB8_CUCSA	1.3e-44	35.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G836440 PE=4 SV=1	[more]
A0A0A0LCZ3_CUCSA	7.8e-42	32.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G836430 PE=4 SV=1	[more]
A0A0A0K9K4_CUCSA	1.6e-39	32.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G093600 PE=4 SV=1	[more]

BLAST of Lsi01G004010.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17490.1	8.6e-08	24.07	F-box and associated interaction domains-containing protein	[more]
AT1G60370.1	6.2e-06	26.82	F-box and associated interaction domains-containing protein	[more]
AT2G04920.1	6.2e-06	25.78	F-box and associated interaction domains-containing protein	[more]

BLAST of Lsi01G004010.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449433922\|ref\|XP_004134745.1\|	3.3e-166	74.55	PREDICTED: F-box protein At3g07870-like [Cucumis sativus]	[more]
gi\|659078870\|ref\|XP_008439950.1\|	4.0e-164	74.55	PREDICTED: putative F-box protein At3g21120 [Cucumis melo]	[more]
gi\|449436028\|ref\|XP_004135796.1\|	9.0e-108	54.59	PREDICTED: putative F-box protein At1g46984 [Cucumis sativus]	[more]
gi\|659099669\|ref\|XP_008450717.1\|	2.2e-106	52.84	PREDICTED: putative F-box only protein 9 [Cucumis melo]	[more]
gi\|659066492\|ref\|XP_008447090.1\|	2.8e-53	36.06	PREDICTED: putative F-box protein At3g52320 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017451	F-box-assoc_interact_dom
IPR015915	Kelch-typ_b-propeller
IPR011043	Gal_Oxase/kelch_b-propeller
IPR001810	F-box_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi01G004010	Lsi01G004010	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi01G004010.1.CDS.1	Lsi01G004010.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi01G004010.1	Lsi01G004010.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 14..56 score: 3.
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 16..56 score: 0.
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 14..56 score: 2.0
IPR011043	Galactose oxidase/kelch, beta-propeller	unknown	SSF50965	Galactose oxidase, central domain	coord: 57..123 score: 1.02E-6coord: 158..297 score: 1.0
IPR015915	Kelch-type beta propeller	GENE3D	G3DSA:2.120.10.80		coord: 181..275 score: 1.
IPR017451	F-box associated interaction domain	TIGRFAMs	TIGR01640	TIGR01640	coord: 107..307 score: 8.2
None	No IPR available	PANTHER	PTHR32133	FAMILY NOT NAMED	coord: 1..355 score: 2.9