Lsi01G004010 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G004010
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionF-box protein
Locationchr01 : 3434044 .. 3435195 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATAAACGGAAAAGTGAGATTAGTAACATAAATTCGGAGCTTACAGCTGATATCGTTCAGGCAATACTCTCGAAAGTCCGCTTCTTCAATTTGCCCAGTTGCAGGCTCGTGTGTAAAGCATGGAACAATCTGGTTTTAACTTGTAAGTTTGATCCTCCAATCTTAATTTCCAACCTCTCGTTTGCCTATGATTGTCCCTCTCGCAATCTCTATTGTGTGGACTTCGATCCTAAATATTTGGAAGGAATGAGTAATTTTGTCTCATTTAGCTTCCATCCTAAATTTTCCTCCAGTTCCATCTCCATTATCAATTCCTGCACTGGACTCCTTTCTCTTCTTCTCTCGAAAAGGAAACCAGGATCACCTATATCTTATGTTCTTTGCATATTAAATCCCATGACAAACGAGTACTTCAAATTTCCCTCCGAGAAATTGAAAACACTTTGTTGTTGTGGTAGACTCTATAGCTACGGATTAGGATTCAATCCTAAAACAAAGCAGTACAAAATAGCAAGAACCTCCTTTCTACGTGACGAATCCTCTACCTCTGTAGAGATTTTTTCATTTGGCCCTACTCGCGGATGGACCCCTGTTGGGGTTTTGCCTTCTCTTGTCATTGAAGACCATGGCGTTTATTTCAATGGAGGCCTCTACTGGATTGGAAACGAGCTGCAACCACGCGATTCTACTAATGCCATTTACCGTTTGGATATAGAAAATGAGAAACTGGAGAAAATTTCATGTCCCCAATTTGGCGGTGGTCATTTTTTCTTTGGTGTTTTTGATGGCACCCTCTATCTAACTATTTTTACTGGCACCGTGGATAACAAGTACCAGATGTGGAAGATGGAAGAAAATTTTTCATGGATTAAGGCATTTGTTTTATCTAGACCAACAAATTTGCGTCATCCTGAGGATCCTCACCAACCTTGGGGAGTATCTCAGCTCCAACCCATCAAAGCTTGTGAAGATGGGAAGATATTGTGTCTTCTTGCTGGACTCCATGTAATACTGTATGACCCCAAGACTGAAAGGGTGGAGATATTGACGAATCAAGATGTCGAAATTGAGAAACATATGCACGTTCATCAGATTGACTTCTTCAATTTTAATTCTCTCCCCAACATTTTGGCAGGAAAGAGTTGA

mRNA sequence

ATGGAGAATAAACGGAAAAGTGAGATTAGTAACATAAATTCGGAGCTTACAGCTGATATCGTTCAGGCAATACTCTCGAAAGTCCGCTTCTTCAATTTGCCCAGTTGCAGGCTCGTGTGTAAAGCATGGAACAATCTGGTTTTAACTTGTAAGTTTGATCCTCCAATCTTAATTTCCAACCTCTCGTTTGCCTATGATTGTCCCTCTCGCAATCTCTATTGTGTGGACTTCGATCCTAAATATTTGGAAGGAATGAGTAATTTTGTCTCATTTAGCTTCCATCCTAAATTTTCCTCCAGTTCCATCTCCATTATCAATTCCTGCACTGGACTCCTTTCTCTTCTTCTCTCGAAAAGGAAACCAGGATCACCTATATCTTATGTTCTTTGCATATTAAATCCCATGACAAACGAGTACTTCAAATTTCCCTCCGAGAAATTGAAAACACTTTGTTGTTGTGGTAGACTCTATAGCTACGGATTAGGATTCAATCCTAAAACAAAGCAGTACAAAATAGCAAGAACCTCCTTTCTACGTGACGAATCCTCTACCTCTGTAGAGATTTTTTCATTTGGCCCTACTCGCGGATGGACCCCTGTTGGGGTTTTGCCTTCTCTTGTCATTGAAGACCATGGCGTTTATTTCAATGGAGGCCTCTACTGGATTGGAAACGAGCTGCAACCACGCGATTCTACTAATGCCATTTACCGTTTGGATATAGAAAATGAGAAACTGGAGAAAATTTCATGTCCCCAATTTGGCGGTGGTCATTTTTTCTTTGGTGTTTTTGATGGCACCCTCTATCTAACTATTTTTACTGGCACCGTGGATAACAAGTACCAGATGTGGAAGATGGAAGAAAATTTTTCATGGATTAAGGCATTTGTTTTATCTAGACCAACAAATTTGCGTCATCCTGAGGATCCTCACCAACCTTGGGGAGTATCTCAGCTCCAACCCATCAAAGCTTGTGAAGATGGGAAGATATTGTGTCTTCTTGCTGGACTCCATGTAATACTGTATGACCCCAAGACTGAAAGGGTGGAGATATTGACGAATCAAGATGTCGAAATTGAGAAACATATGCACGTTCATCAGATTGACTTCTTCAATTTTAATTCTCTCCCCAACATTTTGGCAGGAAAGAGTTGA

Coding sequence (CDS)

ATGGAGAATAAACGGAAAAGTGAGATTAGTAACATAAATTCGGAGCTTACAGCTGATATCGTTCAGGCAATACTCTCGAAAGTCCGCTTCTTCAATTTGCCCAGTTGCAGGCTCGTGTGTAAAGCATGGAACAATCTGGTTTTAACTTGTAAGTTTGATCCTCCAATCTTAATTTCCAACCTCTCGTTTGCCTATGATTGTCCCTCTCGCAATCTCTATTGTGTGGACTTCGATCCTAAATATTTGGAAGGAATGAGTAATTTTGTCTCATTTAGCTTCCATCCTAAATTTTCCTCCAGTTCCATCTCCATTATCAATTCCTGCACTGGACTCCTTTCTCTTCTTCTCTCGAAAAGGAAACCAGGATCACCTATATCTTATGTTCTTTGCATATTAAATCCCATGACAAACGAGTACTTCAAATTTCCCTCCGAGAAATTGAAAACACTTTGTTGTTGTGGTAGACTCTATAGCTACGGATTAGGATTCAATCCTAAAACAAAGCAGTACAAAATAGCAAGAACCTCCTTTCTACGTGACGAATCCTCTACCTCTGTAGAGATTTTTTCATTTGGCCCTACTCGCGGATGGACCCCTGTTGGGGTTTTGCCTTCTCTTGTCATTGAAGACCATGGCGTTTATTTCAATGGAGGCCTCTACTGGATTGGAAACGAGCTGCAACCACGCGATTCTACTAATGCCATTTACCGTTTGGATATAGAAAATGAGAAACTGGAGAAAATTTCATGTCCCCAATTTGGCGGTGGTCATTTTTTCTTTGGTGTTTTTGATGGCACCCTCTATCTAACTATTTTTACTGGCACCGTGGATAACAAGTACCAGATGTGGAAGATGGAAGAAAATTTTTCATGGATTAAGGCATTTGTTTTATCTAGACCAACAAATTTGCGTCATCCTGAGGATCCTCACCAACCTTGGGGAGTATCTCAGCTCCAACCCATCAAAGCTTGTGAAGATGGGAAGATATTGTGTCTTCTTGCTGGACTCCATGTAATACTGTATGACCCCAAGACTGAAAGGGTGGAGATATTGACGAATCAAGATGTCGAAATTGAGAAACATATGCACGTTCATCAGATTGACTTCTTCAATTTTAATTCTCTCCCCAACATTTTGGCAGGAAAGAGTTGA

Protein sequence

MENKRKSEISNINSELTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILISNLSFAYDCPSRNLYCVDFDPKYLEGMSNFVSFSFHPKFSSSSISIINSCTGLLSLLLSKRKPGSPISYVLCILNPMTNEYFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIARTSFLRDESSTSVEIFSFGPTRGWTPVGVLPSLVIEDHGVYFNGGLYWIGNELQPRDSTNAIYRLDIENEKLEKISCPQFGGGHFFFGVFDGTLYLTIFTGTVDNKYQMWKMEENFSWIKAFVLSRPTNLRHPEDPHQPWGVSQLQPIKACEDGKILCLLAGLHVILYDPKTERVEILTNQDVEIEKHMHVHQIDFFNFNSLPNILAGKS
Homology
[Close]
BLAST of Lsi01G004010 vs. Swiss-Prot
Match: FB153_ARATH (Putative F-box protein At3g17490 OS=Arabidopsis thaliana GN=At3g17490 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-06
Identity = 78/324 (24.07%), Postives = 122/324 (37.65%), Query Frame = 1 

Query: 16  LTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPP---------ILISNLSFAYD 75
           L+ D+V+ ILS+V   +L   R  CK WN L    +F            + ++   F   
Sbjct: 6   LSEDLVEEILSRVPAISLKRLRYTCKQWNALFNDQRFSKKHRDKAPKTYLGLTLKDFRIY 65

Query: 76  CPSRNLYCVDFDPKYLEGMSNFVSFSFHPKFSSSS------ISIINSCTGLLSLLLSKRK 135
             S NL+ +      L   +  +   F  K SS +      IS I  C GL+ L  +KR 
Sbjct: 66  SMSSNLHGL------LHNNNIDLLMEFKGKLSSLNDLNDFEISQIYPCDGLI-LCSTKRN 125

Query: 136 PGSPISYVLCILNPMTNE--YFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIARTSFL 195
                   L + NP T +  + K  + ++    C    + Y    +     YKI R    
Sbjct: 126 TR------LVVWNPCTGQTRWIKRRNRRM----CDTFAFGYDNSKSSCLNNYKILRVCEK 185

Query: 196 RDESSTSVEIFSFGPTRGWTPVGVLPSLVIEDHGVYFNGGLYWIGNELQPRDSTNAIYRL 255
                   EIF F  +  W  + V P+ +IE   V   G  YW     +   +   I R 
Sbjct: 186 IKGQQFEYEIFEFS-SNSWRVLDVNPNCIIEGRSVSVKGNSYWFATITK---THYFIRRF 245

Query: 256 DIENEKLEKISCPQFGGGHFFFGVFD----------GTLYLTIFTGTVD-NKYQMW---K 307
           D  +E  +K+  P        F +FD              L++   + D  K  +W   K
Sbjct: 246 DFSSETFQKLPLP--------FHIFDYNDSRALSAFREEQLSVLHQSFDTEKMDIWVTNK 300

[Close]
BLAST of Lsi01G004010 vs. TrEMBL
Match: A0A0A0KJY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G515480 PE=4 SV=1)

HSP 1 Score: 593.2 bits (1528), Expect = 2.3e-166
Identity = 290/389 (74.55%), Postives = 328/389 (84.32%), Query Frame = 1 

Query: 1   MENKRKSEISNI-NSELTAD-IVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILI 60
           ME K K EI  + NSE   D I+Q ILSKV  FNL SCRLVCK+WNNL+LTCKFDP +  
Sbjct: 1   MEKKWKGEIKKLSNSEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLILTCKFDPSLF- 60

Query: 61  SNLSFAYDCPSRNLYCVDFDPKYLEGMSNFVSFSFHPKFSSS--SISIINSCTGLLSLLL 120
             LSFAYDCPSR LYCVDFDP Y EGM++  SF+FHPKFS+S  SISIIN+C GLLSLL+
Sbjct: 61  --LSFAYDCPSRTLYCVDFDPMYFEGMNSIGSFTFHPKFSTSDSSISIINACNGLLSLLI 120

Query: 121 SKRKPGSPISYVLCILNPMTNEYFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIARTS 180
           SKRK GS +SYVL ILNPMTNEYFKFP+EK K+ CCCGRLYSYGLGFNPKTKQYKIARTS
Sbjct: 121 SKRKLGS-VSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTS 180

Query: 181 FLRDESSTSVEIFSFGPTRG-WTPVGVLPSLVIEDHGVYFNGGLYWIGNELQPRDST-NA 240
           F  DES+T VEIF+FG T   WTPVG LPSLV+EDHGVYF GGLYW+ N+  P DS+ +A
Sbjct: 181 FRPDESTTLVEIFTFGSTHQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSISA 240

Query: 241 IYRLDIENEKLEKISCPQFGGGHFFFGVFDGTLYLTIFTGTVDNKYQMWKMEENFSWIKA 300
           IYRLD+ENEKLEKISCPQ+ GGHFFFGVFDGTLYLT+   + +NKYQ+WKM++NFSWIKA
Sbjct: 241 IYRLDLENEKLEKISCPQYIGGHFFFGVFDGTLYLTV---SKNNKYQVWKMKDNFSWIKA 300

Query: 301 FVLSRPTNLRHPEDPHQPWGVSQLQPIKACEDGKILCLLAGLHVILYDPKTERVEILTNQ 360
           FV+SRP NL HP+ PHQPWGVSQL PIKACEDGKILCLLAGLH+ILYDPKT+  EILT+Q
Sbjct: 301 FVISRPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKSAEILTDQ 360

Query: 361 DVEIEKHMHVHQIDFFNFNSLPNILAGKS 384
            V++EKH+HVH ID FNFNSLP+ILAG S
Sbjct: 361 SVKVEKHLHVHHIDAFNFNSLPSILAGNS 382

[Close]
BLAST of Lsi01G004010 vs. TrEMBL
Match: A0A0A0M1M5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G572960 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 6.3e-108
Identity = 214/392 (54.59%), Postives = 268/392 (68.37%), Query Frame = 1 

Query: 1   MENKRKSEISNINSELTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILISN 60
           ME K K+ I N  SEL  D++Q I SK+ FFNLP+CRLV   WNNL+ +CKFDP I IS+
Sbjct: 1   MEKKPKTNIVNKRSELPPDVLQLIFSKLPFFNLPTCRLVSTTWNNLISSCKFDPSISISH 60

Query: 61  LSFAYDCPSR--NLYCVDFDPKYLEGMSNFVSFSFHPKFSSSS--ISIINSCTGLLSLLL 120
           L FA    SR  NL+CV+FDP++ EGMS   SF+FHP  SS S  I+IINSC+GL+SL++
Sbjct: 61  LFFARFYSSRHPNLHCVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINSCSGLISLII 120

Query: 121 SKRKPGSPISYVLCILNPMTNEYFKFPSEKLKTLCCCGRL--YSYGLGFNPKTKQYKIAR 180
           +KR+       ++C+LNP+TNEYFK P+ + K      R+  Y YGLGF+P T QYK+AR
Sbjct: 121 NKRRRRGHRLDLVCVLNPITNEYFKLPTSRSKG----DRVPNYCYGLGFSPTTNQYKLAR 180

Query: 181 TSFLRDESSTSVEIFSFGPTRGWTPVGVLPSLVIEDHGVYFNGGLYWIGNELQPR----D 240
           T F  DE    V+IF+FG +  WTPVG +P+ + E HGVY NGGLYW+G++  P     D
Sbjct: 181 THFTHDEFI--VDIFAFGTSCEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQKLPNGGISD 240

Query: 241 STNAIYRLDIENEKLEKISCPQFGGGHFFFGVFDGTLYLTIFTGTVDNKYQMWKMEENFS 300
            T  IYRLD+++EK EKIS P  GG   +  V++GTLYLT      D  Y  WKMEE+FS
Sbjct: 241 YTEVIYRLDLKDEKFEKISFPLDGGDDPYIAVYNGTLYLTFCCEDFD--YHAWKMEEDFS 300

Query: 301 WIKAFVLSRPTNLRHPEDPHQPWGVSQLQPIKACEDGKILCLLAGLHVILYDPKTERVEI 360
           W K FVL+ P N+ H    H P G   LQ IK CEDG ILCL AG+ +ILYDP T+ VEI
Sbjct: 301 WSKEFVLALPENVHHSLR-HHPIGY-YLQLIKFCEDGNILCLYAGILLILYDPSTQTVEI 360

Query: 361 LTNQDVEIEKHMHVHQIDFFNFNSLPNILAGK 383
           LTNQD EI++ M VHQI+ F+FNSL NILAGK
Sbjct: 361 LTNQDFEIKEAMWVHQIESFSFNSLHNILAGK 382

[Close]
BLAST of Lsi01G004010 vs. TrEMBL
Match: A0A0A0LCB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G836440 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 154/432 (35.65%), Postives = 217/432 (50.23%), Query Frame = 1 

Query: 5   RKSEISNINSELTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILISNLSFA 64
           RKS   N N +L + I++ I+SK+    L + R VCKAWNN++LT K       +NL FA
Sbjct: 4   RKSRGRNQNPQLPSHIIETIISKLSVSVLLNLRRVCKAWNNIILTGKLLHLNSKANL-FA 63

Query: 65  YDCPSRNLYCVDFDPKYL-EGMSNFV--SFSFHPKFSSSSISIINSCTGLLSLLLSK--R 124
           +  P + L+C+DFD K L E   N +  SF+FHP F  S+  IINSC GLL  + SK   
Sbjct: 64  HIPPHQMLHCIDFDSKTLKEKKINCIVGSFTFHPHF--STFKIINSCNGLLCFVNSKIMS 123

Query: 125 KPGSPISYVL-----CILNPMTNEYFKFP-SEKLKTLCCCGRLYSYGLGFNPKTKQYKIA 184
           K    I + L      IL+P+TNEY + P ++  K     G  YS+G G++P  KQYKI 
Sbjct: 124 KEHEKIGFELTQPFAIILSPITNEYVELPLNDAWKKTFYTG--YSFGFGYSPNKKQYKIV 183

Query: 185 RTSFLRDESSTSVEIFSFGP-TRG----WTPVGVLPSLVI--EDHGVYFNGGLYW---IG 244
           + S +R       +IF+ G  TRG    W+ V +L    +     GVY NG LYW    G
Sbjct: 184 KLSSIR-RGLYVADIFTIGTFTRGSYGKWSRVPILIRFCVLGSGDGVYLNGSLYWNGYNG 243

Query: 245 NELQPRDSTNAI-YRLDIENEKLEKISCPQFGGGHFFFG-----VFDGTLYLTIFTGTVD 304
           N L  R+    +  R D+E+EK E +S P       F G     +F+ TLYL+ F    +
Sbjct: 244 NYLDMRNGGKVVLLRFDVEDEKFEVVSFPHGVEDEVFRGSSNIWIFNNTLYLSCFDFNTN 303

Query: 305 N---KYQMWK-MEENFSWIKAFVLSRPTNLRHPEDPHQPWGVSQL--------------- 364
           N   ++ +WK MEE +SW K   L +   +R P   H  W    L               
Sbjct: 304 NGIGRFHVWKLMEEGYSWFK---LEQEFVIRQPISNH--WSTVALLHYIRYLKYRGYYDF 363

Query: 365 ---------QPIKACEDGKILCLLAGLHVILYDPKTERVEILTNQ-DVEIEKHMHVHQID 380
                    Q IK  ED K+L L++   +ILYD KTE+ E+  N  + + +  + ++ ID
Sbjct: 364 SSSCTRYHFQLIKVFEDEKMLFLISRKALILYDSKTEQFEVTYNDLNQDQDGKLWIYDID 423

[Close]
BLAST of Lsi01G004010 vs. TrEMBL
Match: A0A0A0LCZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G836430 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.8e-42
Identity = 138/426 (32.39%), Postives = 212/426 (49.77%), Query Frame = 1 

Query: 1   MENKRKSEISNINSELTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILISN 60
           M+++R+S+    N +  + I++ ILSK+ FF L + R VCKAWNNL+LT K       +N
Sbjct: 1   MKSRRRSQ----NPQFPSHIIETILSKLSFFILLNLRPVCKAWNNLILTSKLLNLNSKAN 60

Query: 61  LSFAYDCPSRNLYCVDFDPKYL-EGMSNFV--SFSFHPKFSSSSISIINSCTGLLSLLLS 120
           L FA+  P + LYC+DFD K L EG  N +  SF+FHP+F   +  ++NSC GL   + +
Sbjct: 61  L-FAHITPYQKLYCIDFDSKILKEGKKNCIVRSFTFHPRF--FTFKMVNSCNGLFCFVNT 120

Query: 121 -------KRKPGSPISYVLCILNPMTNEYFKFPSEKLKTLCCCGRLY---SYGLGFNPKT 180
                  ++K       +  ILNPMTNE     +          + Y   S+G G++P  
Sbjct: 121 EMISDQCEKKSFGLKQPLAIILNPMTNEELSLNNSL--------KFYPGSSFGFGYSPNK 180

Query: 181 KQYKIARTSFLRD------------ESSTSVEIFSFGP-TRG----WTPVGVLPSLVIED 240
           KQYKI + S ++              SS   EIF+ G   RG    W    V    V+  
Sbjct: 181 KQYKIVKLSLIKIPHLRSSYVASHLRSSYVAEIFTIGKFARGRHGKWRQNRVPAVRVLWS 240

Query: 241 HGVYFNGGLYWIGNELQPRDSTNAIYRLDIENEKLEKISCPQFGGGHFF-----FGVFDG 300
            GVY NG LYW         +   + R D+E+EK E +S PQ      F       +F+ 
Sbjct: 241 FGVYLNGSLYWKAYNTTRIRANAVLLRFDVEDEKFEVVSFPQVVRDDAFLISSNIWIFNN 300

Query: 301 TLYLTIFTGTVD-NKYQMWK-MEENFSWIKAFVLSRPTNLRHPEDPHQPWGVSQL----- 360
           TLY++ F   +D   + +WK MEE++SW+K  +  +   ++  +D      VS +     
Sbjct: 301 TLYVSYFDSKIDMGSFHVWKMMEEDYSWVK--LEQKFAIMKSIKDHFSLMMVSYIRDYMI 360

Query: 361 ----QPIKACEDGKILCLLAGLHVILYDPKTERVEILTNQ-DVEIEKHMHVHQIDFFNFN 380
               Q IK  ED  +L L++   +ILYD K ++ E + ++ + + +  + +H+ID  NF+
Sbjct: 361 RCHFQLIKVFEDETMLFLISQRALILYDSKIDQFEAVHDELNQDQDGKLCIHEIDSLNFD 409

[Close]
BLAST of Lsi01G004010 vs. TrEMBL
Match: A0A0A0K9K4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G093600 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39
Identity = 121/377 (32.10%), Postives = 182/377 (48.28%), Query Frame = 1 

Query: 11  NINSELTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILISNLSFAYDCPSR 70
           +INS+L + I++ I SK+   N    R VCK WN L+L C+       S L   +     
Sbjct: 2   SINSQLPSHIIEEIFSKISTVNFSFFRAVCKDWNRLILNCRISSS---STLFITWRPLQP 61

Query: 71  NLYCVDFDPKYLEGMSNFVSFSFHPKFSSSSISIINSCTGLLSLLLSKRKPGSPISYVLC 130
            + CVDF  K+ +GM+   SF+F    SS +  I NSC GLL ++  +       SYV  
Sbjct: 62  RMDCVDFHHKFSQGMNVLSSFTFDFPISSDT-QITNSCNGLLCII--EENKYYKTSYVAT 121

Query: 131 ILNPMTNEYFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIARTSFLRDESSTSVEIFS 190
           I+NPMTNEY   P      L      + +GLGF+ K+ +YK AR   ++  +   +EI +
Sbjct: 122 IINPMTNEYVTLPGYNEYCL-----YFGFGLGFSSKSNEYKFARIFLVK--NICGLEILT 181

Query: 191 FGPTRGWTPVGVLPSLVI-EDHGVYFNGGLYWIGNELQPRDSTNAIYRLDIENEKLEKIS 250
            G +  W  V  LP L I ++ G+YFNG LYWI  +   +D    +  LD+E E    I 
Sbjct: 182 LGKSNEWRHVSYLPILYIDQEDGIYFNGVLYWICID---KDKKIKMLCLDVEEESFSIID 241

Query: 251 CPQFGGGHFFFGVFDGTLYLTIF-----TGTVDNKYQMWKM---EENFSWIKAFVLSRPT 310
            P+          FD  +Y++I       G  + + ++WK+     N  W   FV++   
Sbjct: 242 IPKLANS-AIVDAFDDGIYVSIIDEEEEVGEHEKQVEVWKLGSCASNGLWTLWFVVNISA 301

Query: 311 NLRHPEDPHQPWGVSQLQPIKACEDGKILCLLAGLHVILYDPKTERVEILTNQDVEIEKH 370
            +      +  W    L+ IK CE G+I  LL   +++LYD KT+++  +     E E  
Sbjct: 302 CVPLFYLDNILWKGCSLKIIKICESGEIFFLLEEQYLLLYDLKTQKITKIH----ETEDS 357

Query: 371 MHVHQIDFFNFNSLPNI 379
             V +I   +FNSL  I
Sbjct: 362 FSVFEIKSPSFNSLRTI 357

[Close]
BLAST of Lsi01G004010 vs. TAIR10
Match: AT3G17490.1 (AT3G17490.1 F-box and associated interaction domains-containing protein)

HSP 1 Score: 55.5 bits (132), Expect = 8.6e-08
Identity = 78/324 (24.07%), Postives = 122/324 (37.65%), Query Frame = 1 

Query: 16  LTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPP---------ILISNLSFAYD 75
           L+ D+V+ ILS+V   +L   R  CK WN L    +F            + ++   F   
Sbjct: 6   LSEDLVEEILSRVPAISLKRLRYTCKQWNALFNDQRFSKKHRDKAPKTYLGLTLKDFRIY 65

Query: 76  CPSRNLYCVDFDPKYLEGMSNFVSFSFHPKFSSSS------ISIINSCTGLLSLLLSKRK 135
             S NL+ +      L   +  +   F  K SS +      IS I  C GL+ L  +KR 
Sbjct: 66  SMSSNLHGL------LHNNNIDLLMEFKGKLSSLNDLNDFEISQIYPCDGLI-LCSTKRN 125

Query: 136 PGSPISYVLCILNPMTNE--YFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIARTSFL 195
                   L + NP T +  + K  + ++    C    + Y    +     YKI R    
Sbjct: 126 TR------LVVWNPCTGQTRWIKRRNRRM----CDTFAFGYDNSKSSCLNNYKILRVCEK 185

Query: 196 RDESSTSVEIFSFGPTRGWTPVGVLPSLVIEDHGVYFNGGLYWIGNELQPRDSTNAIYRL 255
                   EIF F  +  W  + V P+ +IE   V   G  YW     +   +   I R 
Sbjct: 186 IKGQQFEYEIFEFS-SNSWRVLDVNPNCIIEGRSVSVKGNSYWFATITK---THYFIRRF 245

Query: 256 DIENEKLEKISCPQFGGGHFFFGVFD----------GTLYLTIFTGTVD-NKYQMW---K 307
           D  +E  +K+  P        F +FD              L++   + D  K  +W   K
Sbjct: 246 DFSSETFQKLPLP--------FHIFDYNDSRALSAFREEQLSVLHQSFDTEKMDIWVTNK 300

[Close]
BLAST of Lsi01G004010 vs. TAIR10
Match: AT1G60370.1 (AT1G60370.1 F-box and associated interaction domains-containing protein)

HSP 1 Score: 49.3 bits (116), Expect = 6.2e-06
Identity = 48/179 (26.82%), Postives = 78/179 (43.58%), Query Frame = 1 

Query: 87  NFVSFSFHPKFSSSSISIINSCTGLLSLLLSKRKPGSPISYVLCILNPMTNEYFKFPSEK 146
           +FV   FH KFS S+    +SC+GL+   + K     P+     + NP T +Y   P   
Sbjct: 88  SFVVADFHMKFSVSTFPDFHSCSGLIHFSMMKGAYTVPV-----VCNPRTGQYAVLPK-- 147

Query: 147 LKTLCCCGRLYSYGLGFNPKTKQYKIARTSFLRD-ESSTSVEIFSFGPTRGWTPVGVLPS 206
             T       YS+ +G++P  KQ K+    F+ D +S     I + G T       +  S
Sbjct: 148 -LTRTRYENSYSF-VGYDPIEKQIKVL---FMSDPDSGDDHRILTLGTTEKMLGRKIECS 207

Query: 207 L---VIEDHGVYFNGGLYWIGNEL-QPRDSTNAIYRLDIENEKLEKISCPQFGGGHFFF 261
           L   ++ + GV  NG LY+  + + +     +     D ++E+ + I C  F    F F
Sbjct: 208 LTHNILSNEGVCINGVLYYKASRIVESSSDDDTSDDDDDDHERSDVIVCFDFRCEKFEF 254

[Close]
BLAST of Lsi01G004010 vs. TAIR10
Match: AT2G04920.1 (AT2G04920.1 F-box and associated interaction domains-containing protein)

HSP 1 Score: 49.3 bits (116), Expect = 6.2e-06
Identity = 66/256 (25.78%), Postives = 102/256 (39.84%), Query Frame = 1 

Query: 14  SELTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILI-----SNLSFAYD-- 73
           S+L  D+V+ ILS+V   +L   R  CK WN+L    +F           S++    D  
Sbjct: 2   SDLPPDLVEDILSRVPATSLKRLRFTCKQWNSLFKNRRFTEKHFCKAPKQSHVLLWKDYT 61

Query: 74  -CP-SRNLYCVDFDPKYLEGMSNFVSFSFHPKFSSSSISIINSCTGLLSLLLSKRKPGSP 133
            CP S NL   +F    +E  S       H       I+ +  C GLL L  +K      
Sbjct: 62  VCPMSINL---NFSGSSIEFKSVLSLKDSHYNSEQVYIAKVFHCDGLL-LCTTK------ 121

Query: 134 ISYVLCILNPMTNE--YFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIAR--TSFLR- 193
             + L + NP   E  +  F ++           +S G   N   + YKI R  TS+L  
Sbjct: 122 -DHRLLVWNPCLGETRWINFENDYKPY-----SRFSLGYKNNKSCRSYKILRFWTSYLTP 181

Query: 194 DESSTSVEIFSFGPTRGW----TPVGVLPSLVIEDHGVYFNGGLYWIGNELQPRDSTNAI 252
           +       I+ F  T  W      V +   L+  ++GV F G  YW+  +    + TN +
Sbjct: 182 NHIGLRYNIYEF-TTDSWRVLIDKVSLNYFLIESENGVSFKGNTYWLALD----EETNFL 236

[Close]
BLAST of Lsi01G004010 vs. NCBI nr
Match: gi|449433922|ref|XP_004134745.1| (PREDICTED: F-box protein At3g07870-like [Cucumis sativus])

HSP 1 Score: 593.2 bits (1528), Expect = 3.3e-166
Identity = 290/389 (74.55%), Postives = 328/389 (84.32%), Query Frame = 1 

Query: 1   MENKRKSEISNI-NSELTAD-IVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILI 60
           ME K K EI  + NSE   D I+Q ILSKV  FNL SCRLVCK+WNNL+LTCKFDP +  
Sbjct: 1   MEKKWKGEIKKLSNSEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLILTCKFDPSLF- 60

Query: 61  SNLSFAYDCPSRNLYCVDFDPKYLEGMSNFVSFSFHPKFSSS--SISIINSCTGLLSLLL 120
             LSFAYDCPSR LYCVDFDP Y EGM++  SF+FHPKFS+S  SISIIN+C GLLSLL+
Sbjct: 61  --LSFAYDCPSRTLYCVDFDPMYFEGMNSIGSFTFHPKFSTSDSSISIINACNGLLSLLI 120

Query: 121 SKRKPGSPISYVLCILNPMTNEYFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIARTS 180
           SKRK GS +SYVL ILNPMTNEYFKFP+EK K+ CCCGRLYSYGLGFNPKTKQYKIARTS
Sbjct: 121 SKRKLGS-VSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTS 180

Query: 181 FLRDESSTSVEIFSFGPTRG-WTPVGVLPSLVIEDHGVYFNGGLYWIGNELQPRDST-NA 240
           F  DES+T VEIF+FG T   WTPVG LPSLV+EDHGVYF GGLYW+ N+  P DS+ +A
Sbjct: 181 FRPDESTTLVEIFTFGSTHQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSISA 240

Query: 241 IYRLDIENEKLEKISCPQFGGGHFFFGVFDGTLYLTIFTGTVDNKYQMWKMEENFSWIKA 300
           IYRLD+ENEKLEKISCPQ+ GGHFFFGVFDGTLYLT+   + +NKYQ+WKM++NFSWIKA
Sbjct: 241 IYRLDLENEKLEKISCPQYIGGHFFFGVFDGTLYLTV---SKNNKYQVWKMKDNFSWIKA 300

Query: 301 FVLSRPTNLRHPEDPHQPWGVSQLQPIKACEDGKILCLLAGLHVILYDPKTERVEILTNQ 360
           FV+SRP NL HP+ PHQPWGVSQL PIKACEDGKILCLLAGLH+ILYDPKT+  EILT+Q
Sbjct: 301 FVISRPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKSAEILTDQ 360

Query: 361 DVEIEKHMHVHQIDFFNFNSLPNILAGKS 384
            V++EKH+HVH ID FNFNSLP+ILAG S
Sbjct: 361 SVKVEKHLHVHHIDAFNFNSLPSILAGNS 382

[Close]
BLAST of Lsi01G004010 vs. NCBI nr
Match: gi|659078870|ref|XP_008439950.1| (PREDICTED: putative F-box protein At3g21120 [Cucumis melo])

HSP 1 Score: 586.3 bits (1510), Expect = 4.0e-164
Identity = 290/389 (74.55%), Postives = 323/389 (83.03%), Query Frame = 1 

Query: 1   MENKRKSEISNI-NSELTAD-IVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILI 60
           ME K K EI  + NSE   D I+Q ILSKV  FNL SCRLVCK+WNNLVLTCKFDP + I
Sbjct: 1   MEKKWKGEIKKLSNSEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLVLTCKFDPSLFI 60

Query: 61  SNLSFAYDCPSRNLYCVDFDPKYLEGMSNFVSFSFHPKFS--SSSISIINSCTGLLSLLL 120
           S    AYDCPSR LYCVDFDP Y EGM++  SFSFHPKFS  SSSISIIN+C GLLSLL+
Sbjct: 61  S---LAYDCPSRTLYCVDFDPMYSEGMNSVGSFSFHPKFSTSSSSISIINACNGLLSLLI 120

Query: 121 SKRKPGSPISYVLCILNPMTNEYFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIARTS 180
           SKRKPGS +SYVL ILNPMTNEYFKFP+EK K+ CCCGRLYSYGLGFNPK KQYKIARTS
Sbjct: 121 SKRKPGS-VSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIARTS 180

Query: 181 FLRDESSTSVEIFSFGPT-RGWTPVGVLPSLVIEDHGVYFNGGLYWIGNELQPRDST-NA 240
           F  DES+T VEIF+FG   + WT VG LPSLV+EDHGVYFNGGLYW+ N+  P DS+ + 
Sbjct: 181 FRPDESTTLVEIFAFGSIYQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSIST 240

Query: 241 IYRLDIENEKLEKISCPQFGGGHFFFGVFDGTLYLTIFTGTVDNKYQMWKMEENFSWIKA 300
           IYRLDIENE LEKISCPQ  GGHFFFGVFDGTLYLT+   + +NKYQ+WKM++NFSWIKA
Sbjct: 241 IYRLDIENENLEKISCPQHLGGHFFFGVFDGTLYLTV---SKNNKYQVWKMKDNFSWIKA 300

Query: 301 FVLSRPTNLRHPEDPHQPWGVSQLQPIKACEDGKILCLLAGLHVILYDPKTERVEILTNQ 360
           FV+S P NL HP+ PHQPWGVSQL PIKACEDGKILCLLAGLH+ILYDPKT+  EILT+Q
Sbjct: 301 FVISSPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKSAEILTDQ 360

Query: 361 DVEIEKHMHVHQIDFFNFNSLPNILAGKS 384
            V++EKH+HVH ID FNFNSLPNILAG S
Sbjct: 361 SVKVEKHLHVHHIDSFNFNSLPNILAGNS 382

[Close]
BLAST of Lsi01G004010 vs. NCBI nr
Match: gi|449436028|ref|XP_004135796.1| (PREDICTED: putative F-box protein At1g46984 [Cucumis sativus])

HSP 1 Score: 399.1 bits (1024), Expect = 9.0e-108
Identity = 214/392 (54.59%), Postives = 268/392 (68.37%), Query Frame = 1 

Query: 1   MENKRKSEISNINSELTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILISN 60
           ME K K+ I N  SEL  D++Q I SK+ FFNLP+CRLV   WNNL+ +CKFDP I IS+
Sbjct: 1   MEKKPKTNIVNKRSELPPDVLQLIFSKLPFFNLPTCRLVSTTWNNLISSCKFDPSISISH 60

Query: 61  LSFAYDCPSR--NLYCVDFDPKYLEGMSNFVSFSFHPKFSSSS--ISIINSCTGLLSLLL 120
           L FA    SR  NL+CV+FDP++ EGMS   SF+FHP  SS S  I+IINSC+GL+SL++
Sbjct: 61  LFFARFYSSRHPNLHCVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINSCSGLISLII 120

Query: 121 SKRKPGSPISYVLCILNPMTNEYFKFPSEKLKTLCCCGRL--YSYGLGFNPKTKQYKIAR 180
           +KR+       ++C+LNP+TNEYFK P+ + K      R+  Y YGLGF+P T QYK+AR
Sbjct: 121 NKRRRRGHRLDLVCVLNPITNEYFKLPTSRSKG----DRVPNYCYGLGFSPTTNQYKLAR 180

Query: 181 TSFLRDESSTSVEIFSFGPTRGWTPVGVLPSLVIEDHGVYFNGGLYWIGNELQPR----D 240
           T F  DE    V+IF+FG +  WTPVG +P+ + E HGVY NGGLYW+G++  P     D
Sbjct: 181 THFTHDEFI--VDIFAFGTSCEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQKLPNGGISD 240

Query: 241 STNAIYRLDIENEKLEKISCPQFGGGHFFFGVFDGTLYLTIFTGTVDNKYQMWKMEENFS 300
            T  IYRLD+++EK EKIS P  GG   +  V++GTLYLT      D  Y  WKMEE+FS
Sbjct: 241 YTEVIYRLDLKDEKFEKISFPLDGGDDPYIAVYNGTLYLTFCCEDFD--YHAWKMEEDFS 300

Query: 301 WIKAFVLSRPTNLRHPEDPHQPWGVSQLQPIKACEDGKILCLLAGLHVILYDPKTERVEI 360
           W K FVL+ P N+ H    H P G   LQ IK CEDG ILCL AG+ +ILYDP T+ VEI
Sbjct: 301 WSKEFVLALPENVHHSLR-HHPIGY-YLQLIKFCEDGNILCLYAGILLILYDPSTQTVEI 360

Query: 361 LTNQDVEIEKHMHVHQIDFFNFNSLPNILAGK 383
           LTNQD EI++ M VHQI+ F+FNSL NILAGK
Sbjct: 361 LTNQDFEIKEAMWVHQIESFSFNSLHNILAGK 382

[Close]
BLAST of Lsi01G004010 vs. NCBI nr
Match: gi|659099669|ref|XP_008450717.1| (PREDICTED: putative F-box only protein 9 [Cucumis melo])

HSP 1 Score: 394.4 bits (1012), Expect = 2.2e-106
Identity = 205/388 (52.84%), Postives = 270/388 (69.59%), Query Frame = 1 

Query: 4   KRKSEISNINSELTADIVQAILSKVRFFNLPSCRLVCKAWNNLVLTCKFDPPILISNLSF 63
           K K+ I N + EL  DI+Q I SK+ FFNLP+CRLV + WNNL+ +CKFDP   I +L F
Sbjct: 3   KPKTNIINKSYELPPDILQQIFSKIPFFNLPTCRLVSRTWNNLISSCKFDPSTSIYHLFF 62

Query: 64  A--YDCPSRNLYCVDFDPKYLEGMSNFVSFSFHPKFSSSS--ISIINSCTGLLSLLLSKR 123
           A  Y    RNL+CV+FDP+++EGMS   SF+FHP F S+S  I+IINSC+GL+SLL++KR
Sbjct: 63  ARFYSSRHRNLHCVEFDPQHVEGMSIVASFAFHPDFCSASSRITIINSCSGLISLLITKR 122

Query: 124 KPGSPISYVLCILNPMTNEYFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIARTSFLR 183
           +       V+C+LNP+TNEYFK P+ +LK        Y YGLGF+PKT QYK+ART F  
Sbjct: 123 RRRGQRRDVVCVLNPITNEYFKHPNLRLKGDKVPN--YCYGLGFSPKTNQYKLARTHFAH 182

Query: 184 DESSTSVEIFSFGPTRGWTPVGVLPSLVIEDHGVYFNGGLYWIGNELQP-----RDSTNA 243
           +E    V+IF+FG +  WTP+G +P+ + E HGVYFNGGLYW+G++ Q       D T  
Sbjct: 183 NEFI--VDIFAFGTSCEWTPIGSVPNFLNEYHGVYFNGGLYWVGSQKQLPNGGLSDYTGV 242

Query: 244 IYRLDIENEKLEKISCPQFGGGHFFFGVFDGTLYLTIFTGTVDNKYQMWKMEENFSWIKA 303
           +YRLD+ +EK +KIS P FGG   + GV++GTLYLT+     D  Y +WKM+E+FSW K 
Sbjct: 243 VYRLDLNDEKFKKISIP-FGGDEPYVGVYNGTLYLTLCCEDFD--YHVWKMKEDFSWSKE 302

Query: 304 FVLSRPTNLRHPEDPHQPWGVSQLQPIKACEDGKILCLLAGLHVILYDPKTERVEILTNQ 363
           FVL+ P N+ H    H P G   LQ +K CEDG ILCL AG+ +I+YDPKT+++EILT+Q
Sbjct: 303 FVLALPENILHSLHRHHPIGY-YLQLVKFCEDGSILCLCAGILLIVYDPKTQQMEILTDQ 362

Query: 364 DVEIEKHMHVHQIDFFNFNSLPNILAGK 383
           D EI++ M  HQI+ F+FNSL N L GK
Sbjct: 363 DFEIKEGMWFHQIESFSFNSLHNTLTGK 382

[Close]
BLAST of Lsi01G004010 vs. NCBI nr
Match: gi|659066492|ref|XP_008447090.1| (PREDICTED: putative F-box protein At3g52320 [Cucumis melo])

HSP 1 Score: 218.0 bits (554), Expect = 2.8e-53
Identity = 141/391 (36.06%), Postives = 200/391 (51.15%), Query Frame = 1 

Query: 12  INSELTADIVQAILSKVR-FFNLPSCRLVCKAWNNLVLTCKFDPPILISNLSFAYDCPSR 71
           I+SEL +DI+  IL  ++ F  L +CRLV K WN  + + KFD  + I+ +S        
Sbjct: 9   IDSELPSDILLQILLLLQPFSKLFTCRLVSKNWNKCISSFKFDSNLFITQISRCRRRSRN 68

Query: 72  NLYCVDFDPKYLEGMSNFVSFSFHPKFSSSSISIINSCTGLLSLLLSKRKPGSPISYVLC 131
            L+CVD +P   EG++   SF  HP +SSSS  I+N C GLL +L  KR         + 
Sbjct: 69  RLHCVDLNPNRSEGVNLVGSFKLHPSWSSSSTGIVNICNGLLCILNGKR---------VA 128

Query: 132 ILNPMTNEYFKFPSEKLKTLCCCGRLYSYGLGFNPKTKQYKIARTSFLRDESSTSVEIFS 191
           ILNPMTNEY + PS              YGLG++PKTKQYK+AR SF  DE    VEI +
Sbjct: 129 ILNPMTNEYMELPSRTEYQSSV------YGLGYSPKTKQYKVARHSFKNDE--LFVEILA 188

Query: 192 FGPTRG------------WTPV-GVLPSLVIEDHGVYFNGGLYWIGNELQPRDSTNAIY- 251
           F  +              W  V  +  +  +  HG YFNG +YW+G   +   S   +Y 
Sbjct: 189 FDTSLADQDGNQNEVQSQWRHVVSISTTYKMHRHGTYFNGAIYWVGEGERSDSSAKNVYV 248

Query: 252 --RLDIENEKLEKISCPQFGG---GHFFFGVFDGTLYLTIFTGTVDNKYQMWKMEENFSW 311
             RL++ NEK E++  P+ G       + GVF+G LYL+ +  T D+ Y +  M     W
Sbjct: 249 LWRLNVTNEKFEELWLPEIGSIWKHTSYCGVFNGKLYLSHYV-TADSMYHVLMMNGKGLW 308

Query: 312 IKAFVLSRPTNLRHPEDPHQPWGVSQLQPIKACEDGKILCLLAGLHVILYDPKTERVEIL 371
              F +S P   +           +  Q IK  + GKILCL     ++L+D K+ ++E L
Sbjct: 309 ETPFFISIPRFYKGSTRLES----NHFQLIKPWKKGKILCLFYSFLLVLFDTKSGKLEKL 368

Query: 372 TNQDVEIEKHMHVHQIDFFNFNSLPNILAGK 383
              + E++K   +  +D  +F SLPNILAGK
Sbjct: 369 DYVEEEVKKSFRICHMDSIHFGSLPNILAGK 377

The following BLAST results are available for this feature:
BLAST of Lsi01G004010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FB153_ARATH1.5e-0624.07Putative F-box protein At3g17490 OS=Arabidopsis thaliana GN=At3g17490 PE=3 SV=1[more]
BLAST of Lsi01G004010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJY9_CUCSA2.3e-16674.55Uncharacterized protein OS=Cucumis sativus GN=Csa_6G515480 PE=4 SV=1[more]
A0A0A0M1M5_CUCSA6.3e-10854.59Uncharacterized protein OS=Cucumis sativus GN=Csa_1G572960 PE=4 SV=1[more]
A0A0A0LCB8_CUCSA1.3e-4435.65Uncharacterized protein OS=Cucumis sativus GN=Csa_3G836440 PE=4 SV=1[more]
A0A0A0LCZ3_CUCSA7.8e-4232.39Uncharacterized protein OS=Cucumis sativus GN=Csa_3G836430 PE=4 SV=1[more]
A0A0A0K9K4_CUCSA1.6e-3932.10Uncharacterized protein OS=Cucumis sativus GN=Csa_6G093600 PE=4 SV=1[more]
BLAST of Lsi01G004010 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G17490.18.6e-0824.07 F-box and associated interaction domains-containing protein[more]
AT1G60370.16.2e-0626.82 F-box and associated interaction domains-containing protein[more]
AT2G04920.16.2e-0625.78 F-box and associated interaction domains-containing protein[more]
BLAST of Lsi01G004010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449433922|ref|XP_004134745.1|3.3e-16674.55PREDICTED: F-box protein At3g07870-like [Cucumis sativus][more]
gi|659078870|ref|XP_008439950.1|4.0e-16474.55PREDICTED: putative F-box protein At3g21120 [Cucumis melo][more]
gi|449436028|ref|XP_004135796.1|9.0e-10854.59PREDICTED: putative F-box protein At1g46984 [Cucumis sativus][more]
gi|659099669|ref|XP_008450717.1|2.2e-10652.84PREDICTED: putative F-box only protein 9 [Cucumis melo][more]
gi|659066492|ref|XP_008447090.1|2.8e-5336.06PREDICTED: putative F-box protein At3g52320 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017451F-box-assoc_interact_dom
IPR015915Kelch-typ_b-propeller
IPR011043Gal_Oxase/kelch_b-propeller
IPR001810F-box_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G004010.1Lsi01G004010.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF00646F-boxcoord: 14..56
score: 3.
IPR001810F-box domainSMARTSM00256fbox_2coord: 16..56
score: 0.
IPR001810F-box domainunknownSSF81383F-box domaincoord: 14..56
score: 2.0
IPR011043Galactose oxidase/kelch, beta-propellerunknownSSF50965Galactose oxidase, central domaincoord: 57..123
score: 1.02E-6coord: 158..297
score: 1.0
IPR015915Kelch-type beta propellerGENE3DG3DSA:2.120.10.80coord: 181..275
score: 1.
IPR017451F-box associated interaction domainTIGRFAMsTIGR01640TIGR01640coord: 107..307
score: 8.2
NoneNo IPR availablePANTHERPTHR32133FAMILY NOT NAMEDcoord: 1..355
score: 2.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G004010Bottle gourd (USVL1VR-Ls)lsilsiB048
Lsi01G004010Bottle gourd (USVL1VR-Ls)lsilsiB066
Lsi01G004010Cucumber (Gy14) v1cgylsiB022
Lsi01G004010Cucumber (Gy14) v1cgylsiB093
Lsi01G004010Cucumber (Gy14) v1cgylsiB238
Lsi01G004010Cucurbita maxima (Rimu)cmalsiB199
Lsi01G004010Cucurbita maxima (Rimu)cmalsiB366
Lsi01G004010Cucurbita maxima (Rimu)cmalsiB477
Lsi01G004010Cucurbita maxima (Rimu)cmalsiB597
Lsi01G004010Cucurbita maxima (Rimu)cmalsiB786
Lsi01G004010Cucurbita moschata (Rifu)cmolsiB189
Lsi01G004010Cucurbita moschata (Rifu)cmolsiB354
Lsi01G004010Cucurbita moschata (Rifu)cmolsiB462
Lsi01G004010Cucurbita moschata (Rifu)cmolsiB582
Lsi01G004010Cucurbita moschata (Rifu)cmolsiB774
Lsi01G004010Cucurbita pepo (Zucchini)cpelsiB022
Lsi01G004010Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G004010Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G004010Cucurbita pepo (Zucchini)cpelsiB415
Lsi01G004010Wild cucumber (PI 183967)cpilsiB018
Lsi01G004010Wild cucumber (PI 183967)cpilsiB439
Lsi01G004010Wild cucumber (PI 183967)cpilsiB516
Lsi01G004010Cucumber (Chinese Long) v2culsiB019
Lsi01G004010Cucumber (Chinese Long) v2culsiB434
Lsi01G004010Cucumber (Chinese Long) v2culsiB502
Lsi01G004010Melon (DHL92) v3.5.1lsimeB127
Lsi01G004010Melon (DHL92) v3.5.1lsimeB130
Lsi01G004010Melon (DHL92) v3.5.1lsimeB149
Lsi01G004010Watermelon (Charleston Gray)lsiwcgB127
Lsi01G004010Watermelon (Charleston Gray)lsiwcgB128
Lsi01G004010Watermelon (Charleston Gray)lsiwcgB134
Lsi01G004010Watermelon (97103) v1lsiwmB137
Lsi01G004010Watermelon (97103) v1lsiwmB144
Lsi01G004010Watermelon (97103) v1lsiwmB163
Lsi01G004010Cucumber (Gy14) v2cgyblsiB015
Lsi01G004010Cucumber (Gy14) v2cgyblsiB398
Lsi01G004010Melon (DHL92) v3.6.1lsimedB138
Lsi01G004010Melon (DHL92) v3.6.1lsimedB156
Lsi01G004010Silver-seed gourdcarlsiB585
Lsi01G004010Silver-seed gourdcarlsiB797
Lsi01G004010Silver-seed gourdcarlsiB846
Lsi01G004010Silver-seed gourdcarlsiB917
Lsi01G004010Cucumber (Chinese Long) v3cuclsiB020
Lsi01G004010Cucumber (Chinese Long) v3cuclsiB462
Lsi01G004010Watermelon (97103) v2lsiwmbB115
Lsi01G004010Watermelon (97103) v2lsiwmbB131
Lsi01G004010Wax gourdlsiwgoB168
Lsi01G004010Wax gourdlsiwgoB192