Lsi01G002050.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G002050.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Agamous MADS-box transcription factor 1b
Location	chr01 : 1920957 .. 1927222 (-)
Sequence length	1024

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTACTTCCATTTCCCTCTTCTCTTCTCCTAATCTTTCTGAATACAAGCTGTGTGTGTAGGGAGATTTCATAAAGACAGCAAACAGCCCTTCTTTTTGTTCTGTCTTAAAAGTTCCTTCTTCAACCAGCTCTTTTCCTCATCAGGTTAGTGATCAAAATACTAGAACAAATAACTCAATACTTGAACAACATTTCAGTATTGTCCCCAAATCTCTCTCTCTTGAACCAAAAGAACAGCAGCTTAGATTTCAGCTTCTGATTGTGCTGTTCATTCCACCTGTAAATCCATAAAAATGAGAATGAAAGAACATTACTTTTGCCCCAAAAATTGCATCTCACAACTTATCTCTTCTCTTTTCTTATGGGATCAACAGTAGTCAGGAAAATGGAAGGAAAAAAAATGAAGATTTGGGTTTTGATTGATGACTGATCTGTTTGGAATTTGATTTAGGTAAGTTGCAAATAAAGGGGTTCCAGAATCAAGAAGAGAAGATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGTTTGCTCAAAAAAGCTTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGGTAAAACAAAAACACTATTATTACATCTCTTTCATTTTCATTATTTACAGATTTTTACATTGTTTTTTTCAAATTAAATGTTCCTTTCTCCCTCAAACTTGTAACTGATTTGGGTCTTGGAAGTTTTCTAAGTAGAGTTTTTAGGTAAGGGGCAAGATTTTGGGAATCTGGGTTGTATTGAGAATATAGTCAATTTGTTTGGAAGATTTGAGTTGTATGAAATGAAAATTTACCAAATTTCTTTTTTCCTTTTGCTTCTTCTTTTCCCTGAGTTGTGTTTTTACTTGTATGAGTTTGTGGGGATTTGTTTTCTGATTTTTTTTGCTATAATTGTATCAGTTTGCTGGTTCTTGGTTTGGTGGATACATAGATCTGGTGTAACAGATGGAAAGATAGGGCATATTATGGAATGGTTATTGGAAGGTTGAAAGGAGTAAGGGTTTTGGTAAACTTATGGTGGTCTCTGAGATCACCTCTTTACCTTACCTTCCTCCATTGTTTAAAGTTTCTGTTTCTTTCCTTTTTACTTCCATTGTTTCTTTCTTTCTCTCTCTGTCTATATGTCATCTCATTAGTCCAATCCTCTTCATCTCCTTGACATTTCCTTAATAGAAACGTCAGTTGGATATTAAGAAAGAGAAAGTACAGTTTCAAAACTTTGTCAAAAGACCATATAGAAATAAGCTTATTAGGGTTTCAAACCCAAAGAAAAGGGTAAAAGAAAAGAAGAAAGAAAAACTTGTAGGTTTCCTTGAAACATGCTAAAACACCCTTTTCCAACCAATCACCTCCAAGTCAAGATTGAACTGCCTTATTGGTTTCCATTCAAACCCTGAAATAAAAATCTCATTAGCTCATCTTTGTTTTTTCCAAATATAAATTAATCAATCAAGCTTTGTCTGAATTATTAATAGGTAAACCTCAGATTAAACATGTTTTAAAAATAAAAAAAATAAAAAAAAAAAACCCTAAGACAAATTTAGGGGAAATAATTTTTATTTTTTTAAAAAAAAGGAGGGGAAAAAGCGTAGCTTTTCTACCACAAACAAACGGAGCCAATAGCAAGTCAGAAACTTTACACAAGTTTTATGTTTGTCTCCATTGTTTGGGAAAAGGGGTGTCTGGTGTTAGGGTTTTTGGTTCTGATTTTTGGTCTAGGGCTTCAAGAATCTTTAGTCACGTCACTCAAGATTTTTCAGTTTTCAGCCTCTCTGACAAACAAAAGGGTTTCTGTCACAATTTCTAAAATGGGTTTCATTTTATTTTCCCACTTCAGATTCAATTCAATTTCAAGTCCTCCCACCAATTTCTTTTCAAACCCTTACACATCTCTCTTATAACCCATTCCCCCAAAATCTCTCTTTCTCATACCCATGCCCCAAAATCTCTCCTTTCCTCCTCTCTTTCAAACTCCAAATCAGAGAAGGATGATTCGATGGAAGAAGAAACTAAATGGGGTTCTTCAGTTTACCAAAAATTTTGAATCTTTATACAAAAAAAAAGGTATTTTTAGAGAGAGAGAGATTAGGGTACGGAAACTGGTAGAGCCAAGCCAATGGGAGAGCTTGAGCATTTATCTTAATAGGACAGCTACGGCAGCCACTGATTGAAACGGACGGCTATGATGTACACAGAGTTTGAGACACAAGGCTTTTACCGTCAATTTCTTTTTCTAAGGTTTTAATGTTGTATCGAGGTGGATAAGAGGATGTAATTAAGTTGATTGTCCACTGAACAATTTTATCTAATGACACTTGGCAAATTCTTGACCCTTGATTTGATTAAGCCAATCATAATGCATGATCTCTGCCAGCATGTTTCAGACAGCCAATCACCAGCTCGACGAAATTAAGGTATCAGTGCATCGGTAAAGGAAATTATGGATATATGCTTCAAATAAATGATATTTAAATGTGCGAACTTTTTTCTTTTTACCTTAAACTTTACATTCTGTCACATCTATTGAGAGGCAATTGACCCCTTTGAAGTGATTTCTATCATTCATTTTACTTTTTGTGGGGTTTTCGTGAAGGATTCAGTTAACTGAGAGAGTTGGGTTAATGTGACAGTTTAGAAAGATGTCCCTTTTTTATAATCAAAAACATGTTTTAATGCTTTGATTATTTTGTTTGTACTTTACTATATTGTTTACCCTGTGTGGAAGATCATCATAATTTTACTTTAATCAACGTTGCATGATTAAGGAGTCTCAATCAACGTGATAATGGTATTAATTTGGATTATACCTTGGTTAATTGCAGTGTGAAGGCAACAATTGATAGATACAAGAAGGCATCCTCAGATTCCTCTAACACTGGATCTACTTCTGAAGCTAACACTCAGGTACATTTTAATTTCACCAAATTTAGAGAGGAATGACTGTTCATCTGAGTGTTGGAGATGGAAGATAACTTAATACATCAAATAATGGAGTCCAAAAGAAAATTAGATGAAGAATATATATAAATACTCACACTTAAGTTCAAGCATAGAAGTAAGGAATTTCAATTTTGACCTAAAATACGGTAAATGATGTAGCTCAGGTCAACAATAGAGTAACTAAATATGGAGAATAAAACAATGAAATTGTTAAGCTCCATAATTATGAGCAAACTTTGAACTTTTTGAGTTCACTGAATTTGTAATTATGTGTAAAGATGTAATAAAGAATTAAACATATTTGTCAAAAAATTTGCTAATGTGAGTTCAACTGAGTGATGTTACAAATAACTAAAATACGGCTGGATGTTCGACTTATCATTTCAAGCTTCAATGATTACAACCTCTCATCAATGTTTCTAAACTTGGCTGCCTTGATGTAATTTTCTGTTGTTGCTTTTAGGCTTCCCTCTAGCCCTGGCCGATTGTTTTGTTATTCATTCATTAATGAAATGAGTAATGGAATATGATGAGAGTGTTAGGAATGTATCAATATAATTGAGATAAATCGATGCACCTACGGATCTACGTTTTATCTTTTTCTAAAGAAAAGTACATTATAAATAATTGTAGAGAAATTACATAATTAGTGTATCATTAAAAAAAAATTATCTTAAAACACTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAGAAAAAAAAAAAGGAATTCTACTTCACTAACTTTTTGATGGTCACAAATGCTTGGAATGAGTACTTAGAGATTGATTTTAAGTTGAACAAATTTTCTATAGATTCTACAAGACTTTAAATTAAACGAAGAAAAAACCATGTGTTTGTGTTTATTTTTTGCATGAATATTTTAAGGAGTAGTTGATTTTGAAATTGTTAAAATCACTTCTGTTGTTATTTAAAATCAGTTTTGATGGTAAAAAAACCAGGTTCAAATATTAAATTGATTATGTATGATTAAATGAAATTTTCTGAATGAAATCATGTCAGACTTACTCCTTAGGCGTGCTCCATGATAATAGTAACATTCTACAAAAATACAAATCTTAGGGCACTTAGTCTTCTTGAAAATTTTAATTTTGTATTGCCCTTTTGATCTATCAAGTTTTCAATGACATGTATATTTGCCATATATGGTTTCCTGAAATTGATAATGAATTCTGATTAGCTAAATTATAGTTCCTTTATCCTACTAAATAACAACGCTATTTCATATCTTACCCCAACTATATTTATCCCCAATGAGCCCAGGGGTGTTTCCCCTATTAGCTTCAGCTTTTCAGTTCCGTGTTGATTTAGTAATAATTGTGATTGAAAATTGAGATCCACTCCAAAGCATTGAATTCAACTTCTTAATTAACCCTTAAACTGGGCAAACTCACTATTGAATCACAAACCAGTTTTACCAACAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTACAGAACTCAAACAGGTATTTTGAAGGAAAGTTATTCAATGACATTTCCGTTAATTCACAATTTCAAAGTTTGTCATCTTCTAAAGAAAGTTGTTTTTCCAGGAACATGCTGGGCGAGTCTCTAAGTTCTTTGAGTGTAAAAGATCTCAAAAGCCTTGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGATCCAAAAAGGTTTATTTTAATTTCATTCTTGTTTTTGAACTATATCTTTGAGAAACTCATTAGTTAACAACTTTTCTTTTCTTGCTCTCTCTCTCTCTCTTCCAGAATGAACTCCTCTTTGCTGAAATTGAGTATATGCGGAAAAGGGTAAATTTTCATATCCCAATTTGACCATACTAATGCTCTTGAGAAAGCATCTTCTAATTCATTATAATGCATTCTGGAGGTTTAATTTCTTGCTGCATTTGGGTATTTGAATTTGAGTATATACATACATGTGAATACAACGAAAGTGAAAGATAAGAGTATTGAAATTCTGTTCTTGAAAATAGAGGGTCTGAGTTGGAAAGTCGTTAGATTGGCTATCAAAATGGCCAATTAATTTCATGGTGAGGAAACTGATAATCATCTATTGAAGTCTACAATAATGAAACCTAAATTTCTAGGAAAAATGACGATCAATTTCAGGCAAAAGAAAGAAAAATTGTGAGTGAAAATTCTTGTGTGGCAGTTGAGAATATGCTGTTAATGTGAATATGAAGAAAAAGGGGGCACCAAGAAAACTAGAAACAACTTTTCCTTTTCAACCACTACGTCTGGATCGCATTAGCTAAACCCAAGTAATTGTTTGGTGAAAATGAAACAACTTTCCAAATGGGTTGTTTGAAAGTTTAATTTTTCCAACCAGGGTTTCATTGATTTTCTTCTAAATCATAGAAAATATTAATATAATGAAGTGATTGTGTATAAAAATTTGTTCTTTTACAGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGGTCTCTTTAATTAATTAATTTCTTCAATCTGTCTGTGTGTTATGAGCATTTAAAATTAAAATTTATAGAGAAATGGTTGCAGATAGCCGAGAGTGAACGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAGTATCCACGCCAAGACAACATGGCTCTTCAATTAGTTTAAAGGTTCTGTTTGTTCGTTTGTTTTTACAGTTAAATGAAGCCATTGTGTCTTTATCTAACAAAATACCAACCAAACATTTCGTTGCAGTTAATAATAAAATGGTTGGAAGCACTCTGATTAGTGGATTTGGATTATAAGGAGTGCAGACCATTTGCAGATTGAAAGGTACTCAAAAGGAAGTTGAAGAAAGAAGATCATTTCTCATTTATGCCTTAACAAAAGTCTTAGCTTTTTCTGGACTCTAAAAAAGACTTATTCTAATATATAAATATAATGTGTAATGTTGTTGTATGGTATGCTTCCAAAAACATTAATAACCTATCTTTGTCTTAAATTTATGTCTCTTTGATACAAACCACTAACATATATTTTCTCATGCTTCTG

mRNA sequence

CTTACTTCCATTTCCCTCTTCTCTTCTCCTAATCTTTCTGAATACAAGCTGTGTGTGTAGGGAGATTTCATAAAGACAGCAAACAGCCCTTCTTTTTGTTCTGTCTTAAAAGTTCCTTCTTCAACCAGCTCTTTTCCTCATCAGGTAAGTTGCAAATAAAGGGGTTCCAGAATCAAGAAGAGAAGATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGTTTGCTCAAAAAAGCTTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGCATGTTTCAGACAGCCAATCACCAGCTCGACGAAATTAAGGTATCAGTGCATCGTGTGAAGGCAACAATTGATAGATACAAGAAGGCATCCTCAGATTCCTCTAACACTGGATCTACTTCTGAAGCTAACACTCAGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCCGAGAGTGAACGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAGTATCCACGCCAAGACAACATGGCTCTTCAATTAGTTTAAAGTTAATAATAAAATGGTTGGAAGCACTCTGATTAGTGGATTTGGATTATAAGGAGTGCAGACCATTTGCAGATTGAAAGGTACTCAAAAGGAAGTTGAAGAAAGAAGATCATTTCTCATTTATGCCTTAACAAAAGTCTTAGCTTTTTCTGGACTCTAAAAAAGACTTATTCTAATATATAAATATAATGTGTAATGTTGTTGTATGGTATGCTTCCAAAAACATTAATAACCTATCTTTGTCTTAAATTTATGTCTCTTTGATACAAACCACTAACATATATTTTCTCATGCTTCTG

Coding sequence (CDS)

ATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGTTTGCTCAAAAAAGCTTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGCATGTTTCAGACAGCCAATCACCAGCTCGACGAAATTAAGGTATCAGTGCATCGTGTGAAGGCAACAATTGATAGATACAAGAAGGCATCCTCAGATTCCTCTAACACTGGATCTACTTCTGAAGCTAACACTCAGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCCGAGAGTGAACGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAGTATCCACGCCAAGACAACATGGCTCTTCAATTAGTTTAA

Protein sequence

MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHNNNQLLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALQLV

Homology

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BLAST of Lsi01G002050.1 vs. Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 9.2e-39
Identity = 96/138 (69.57%), Postives = 102/138 (73.91%), Query Frame = 1


Query: 4   SPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 63
           SPQRK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY
Sbjct: 12  SPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 71

Query: 64  EYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHNNNQ 123
           EYANNS                  VKATI+RYKKA SDSSNTGS SEAN Q      +  
Sbjct: 72  EYANNS------------------VKATIERYKKACSDSSNTGSISEANAQYYQQEASK- 129

Query: 124 LLRAKIAE-SERNVNMMG 141
            LRA+I     +N NM+G
Sbjct: 132 -LRAQIGNLQNQNRNMLG 129

[Close]

BLAST of Lsi01G002050.1 vs. Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-38
Identity = 95/138 (68.84%), Postives = 102/138 (73.91%), Query Frame = 1


Query: 4   SPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 63
           SPQRK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFS+RGRLY
Sbjct: 12  SPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLY 71

Query: 64  EYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHNNNQ 123
           EYANNS                  VKATI+RYKKA SDSSNTGS SEAN Q      +  
Sbjct: 72  EYANNS------------------VKATIERYKKACSDSSNTGSVSEANAQYYQQEASK- 129

Query: 124 LLRAKIAE-SERNVNMMG 141
            LRA+I     +N NMMG
Sbjct: 132 -LRAQIGNLMNQNRNMMG 129

[Close]

BLAST of Lsi01G002050.1 vs. Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.8e-38
Identity = 94/138 (68.12%), Postives = 101/138 (73.19%), Query Frame = 1


Query: 4   SPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 63
           SPQRK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY
Sbjct: 12  SPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 71

Query: 64  EYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHNNNQ 123
           EYANNS                  VKATI+RYKKA SDSSNTGS +EAN Q      +  
Sbjct: 72  EYANNS------------------VKATIERYKKACSDSSNTGSIAEANAQYYQQEASK- 129

Query: 124 LLRAKIAE-SERNVNMMG 141
            LRA+I     +N N +G
Sbjct: 132 -LRAQIGNLQNQNRNFLG 129

[Close]

BLAST of Lsi01G002050.1 vs. Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.9e-36
Identity = 90/139 (64.75%), Postives = 99/139 (71.22%), Query Frame = 1


Query: 4   SPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 63
           SPQRK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLY
Sbjct: 12  SPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLY 71

Query: 64  EYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHNNNQ 123
           EYANNS                  VK TI+RYKKA +DS NT S SEAN Q      +  
Sbjct: 72  EYANNS------------------VKGTIERYKKACTDSPNTSSVSEANAQFYQQEASK- 130

Query: 124 LLRAKIAESERNVNMMGGE 143
            LR +I+  ++N   M GE
Sbjct: 132 -LRQEISSIQKNNRNMMGE 130

[Close]

BLAST of Lsi01G002050.1 vs. Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-35
Identity = 88/139 (63.31%), Postives = 97/139 (69.78%), Query Frame = 1


Query: 4   SPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 63
           SPQRK GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY
Sbjct: 12  SPQRKAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 71

Query: 64  EYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHNNNQ 123
           EY+NNS                  VK TI+RYKKA SD+SNTGS +E N Q       + 
Sbjct: 72  EYSNNS------------------VKGTIERYKKAISDNSNTGSVAEINAQY--YQQESA 130

Query: 124 LLRAKIAESERNVNMMGGE 143
            LR +I   + +   + GE
Sbjct: 132 KLRQQIISIQNSNRQLMGE 130

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BLAST of Lsi01G002050.1 vs. TrEMBL
Match: A0A0B2SN08_GLYSO (Floral homeotic protein AGAMOUS OS=Glycine soja GN=glysoja_015506 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.4e-41
Identity = 119/200 (59.50%), Postives = 132/200 (66.00%), Query Frame = 1


Query: 2   SDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGR 61
           S+SPQRKMGRGKIEIKRIENTT+RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGR
Sbjct: 10  SESPQRKMGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGR 69

Query: 62  LYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTG-STSEANTQ------ 121
           LYEYANNS                  VKA+I+RYKKASSDSS+ G S SEAN Q      
Sbjct: 70  LYEYANNS------------------VKASIERYKKASSDSSSGGRSASEANAQFYQQEA 129

Query: 122 --------EIDLHNNNQLLRAKIAESER---NVNMMGG--EFELMQSHPYDPRDFFQVNG 180
                    +  HN    L   I E ER   NVN + G   +E MQS  +D R FFQV G
Sbjct: 130 AKLRVQISNLQNHNRQVALVVHIGEGERSHHNVNGLSGSTSYESMQSQ-FDSRGFFQVTG 189

[Close]

BLAST of Lsi01G002050.1 vs. TrEMBL
Match: Q1WG48_MOMCH (MADS box 2 OS=Momordica charantia GN=MCAG2 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.4e-40
Identity = 103/141 (73.05%), Postives = 106/141 (75.18%), Query Frame = 1


Query: 1   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 60
           MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG
Sbjct: 1   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 60

Query: 61  RLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHN 120
           RLYEYANNS                  VKATIDRYKKASSDSSNTGSTSEANTQ      
Sbjct: 61  RLYEYANNS------------------VKATIDRYKKASSDSSNTGSTSEANTQ--FYQQ 120

Query: 121 NNQLLRAKIAESER-NVNMMG 141
               LR +I   +  N NM+G
Sbjct: 121 EAAKLRVQIGNLQNSNRNMLG 121

[Close]

BLAST of Lsi01G002050.1 vs. TrEMBL
Match: A0A0A0KID6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G520410 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.4e-40
Identity = 103/141 (73.05%), Postives = 106/141 (75.18%), Query Frame = 1


Query: 1   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 60
           MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG
Sbjct: 654 MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 713

Query: 61  RLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHN 120
           RLYEYANNS                  VKATIDRYKKASSDSSNTGSTSEANTQ      
Sbjct: 714 RLYEYANNS------------------VKATIDRYKKASSDSSNTGSTSEANTQ--FYQQ 773

Query: 121 NNQLLRAKIAESER-NVNMMG 141
               LR +I   +  N NM+G
Sbjct: 774 EAAKLRVQIGNLQNSNRNMLG 774

[Close]

BLAST of Lsi01G002050.1 vs. TrEMBL
Match: Q9SBK1_CUCSA (Agamous-like putative transcription factor OS=Cucumis sativus GN=CAG3 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.4e-40
Identity = 103/141 (73.05%), Postives = 106/141 (75.18%), Query Frame = 1


Query: 1   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 60
           MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG
Sbjct: 9   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 68

Query: 61  RLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHN 120
           RLYEYANNS                  VKATIDRYKKASSDSSNTGSTSEANTQ      
Sbjct: 69  RLYEYANNS------------------VKATIDRYKKASSDSSNTGSTSEANTQ--FYQQ 128

Query: 121 NNQLLRAKIAESER-NVNMMG 141
               LR +I   +  N NM+G
Sbjct: 129 EAAKLRVQIGNLQNSNRNMLG 129

[Close]

BLAST of Lsi01G002050.1 vs. TrEMBL
Match: O64958_CUCSA (CUM1 OS=Cucumis sativus GN=CUM1 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.4e-40
Identity = 103/141 (73.05%), Postives = 106/141 (75.18%), Query Frame = 1


Query: 1   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 60
           MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG
Sbjct: 34  MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 93

Query: 61  RLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHN 120
           RLYEYANNS                  VKATIDRYKKASSDSSNTGSTSEANTQ      
Sbjct: 94  RLYEYANNS------------------VKATIDRYKKASSDSSNTGSTSEANTQ--FYQQ 153

Query: 121 NNQLLRAKIAESER-NVNMMG 141
               LR +I   +  N NM+G
Sbjct: 154 EAAKLRVQIGNLQNSNRNMLG 154

[Close]

BLAST of Lsi01G002050.1 vs. TAIR10
Match: AT4G18960.1 (AT4G18960.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 147.5 bits (371), Expect = 7.8e-36
Identity = 87/139 (62.59%), Postives = 96/139 (69.06%), Query Frame = 1


Query: 4   SPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 63
           SP RK GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY
Sbjct: 12  SPLRKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 71

Query: 64  EYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHNNNQ 123
           EY+NNS                  VK TI+RYKKA SD+SNTGS +E N Q       + 
Sbjct: 72  EYSNNS------------------VKGTIERYKKAISDNSNTGSVAEINAQY--YQQESA 130

Query: 124 LLRAKIAESERNVNMMGGE 143
            LR +I   + +   + GE
Sbjct: 132 KLRQQIISIQNSNRQLMGE 130

[Close]

BLAST of Lsi01G002050.1 vs. TAIR10
Match: AT3G58780.3 (AT3G58780.3 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 144.1 bits (362), Expect = 8.6e-35
Identity = 78/115 (67.83%), Postives = 89/115 (77.39%), Query Frame = 1


Query: 7   RKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 66
           +K+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYEYA
Sbjct: 14  KKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 73

Query: 67  NNSMFQTANHQLDEIK-------VSVHRVKATIDRYKKASSDSSNTGSTSEANTQ 115
           NNS       +  + K        S H V+ TI+RYKKA SD+ N  S +EANTQ
Sbjct: 74  NNSFIYLLLEKKKKKKKKKNLWIYSSHVVRGTIERYKKACSDAVNPPSVTEANTQ 128

[Close]

BLAST of Lsi01G002050.1 vs. TAIR10
Match: AT2G42830.2 (AT2G42830.2 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 137.9 bits (346), Expect = 6.2e-33
Identity = 74/108 (68.52%), Postives = 84/108 (77.78%), Query Frame = 1


Query: 7   RKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 66
           +K+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYEYA
Sbjct: 14  KKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 73

Query: 67  NNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQ 115
           NNS                  V+ TI+RYKKA SD+ N  + +EANTQ
Sbjct: 74  NNS------------------VRGTIERYKKACSDAVNPPTITEANTQ 103

[Close]

BLAST of Lsi01G002050.1 vs. TAIR10
Match: AT4G09960.3 (AT4G09960.3 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 134.4 bits (337), Expect = 6.8e-32
Identity = 79/134 (58.96%), Postives = 93/134 (69.40%), Query Frame = 1


Query: 8   KMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 67
           +MGRGKIEIKRIEN+TNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEYAN
Sbjct: 26  RMGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYAN 85

Query: 68  NSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHNNNQLLRA 127
           N+                  +++TI+RYKKA SDS+NT +  E N         +  LR 
Sbjct: 86  NN------------------IRSTIERYKKACSDSTNTSTVQEINAAY--YQQESAKLRQ 139

Query: 128 KIAESER-NVNMMG 141
           +I   +  N N+MG
Sbjct: 146 QIQTIQNSNRNLMG 139

[Close]

BLAST of Lsi01G002050.1 vs. TAIR10
Match: AT5G15800.2 (AT5G15800.2 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 104.0 bits (258), Expect = 9.9e-23
Identity = 55/94 (58.51%), Postives = 67/94 (71.28%), Query Frame = 1


Query: 9   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 68
           MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ ++
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 69  SMFQTANHQLDEIKVSVHRVKATIDRYKKASSDS 103
           S                  +  T+DRY+K S  S
Sbjct: 61  S-----------------NMLKTLDRYQKCSYGS 77

[Close]

BLAST of Lsi01G002050.1 vs. NCBI nr
Match: gi|734436332|gb|KHN48036.1| (Floral homeotic protein AGAMOUS [Glycine soja])

HSP 1 Score: 176.8 bits (447), Expect = 3.4e-41
Identity = 119/200 (59.50%), Postives = 132/200 (66.00%), Query Frame = 1


Query: 2   SDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGR 61
           S+SPQRKMGRGKIEIKRIENTT+RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGR
Sbjct: 10  SESPQRKMGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGR 69

Query: 62  LYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTG-STSEANTQ------ 121
           LYEYANNS                  VKA+I+RYKKASSDSS+ G S SEAN Q      
Sbjct: 70  LYEYANNS------------------VKASIERYKKASSDSSSGGRSASEANAQFYQQEA 129

Query: 122 --------EIDLHNNNQLLRAKIAESER---NVNMMGG--EFELMQSHPYDPRDFFQVNG 180
                    +  HN    L   I E ER   NVN + G   +E MQS  +D R FFQV G
Sbjct: 130 AKLRVQISNLQNHNRQVALVVHIGEGERSHHNVNGLSGSTSYESMQSQ-FDSRGFFQVTG 189

[Close]

BLAST of Lsi01G002050.1 vs. NCBI nr
Match: gi|778721214|ref|XP_011658265.1| (PREDICTED: floral homeotic protein AGAMOUS isoform X1 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 4.9e-40
Identity = 103/141 (73.05%), Postives = 106/141 (75.18%), Query Frame = 1


Query: 1   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 60
           MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG
Sbjct: 34  MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 93

Query: 61  RLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHN 120
           RLYEYANNS                  VKATIDRYKKASSDSSNTGSTSEANTQ      
Sbjct: 94  RLYEYANNS------------------VKATIDRYKKASSDSSNTGSTSEANTQ--FYQQ 153

Query: 121 NNQLLRAKIAESER-NVNMMG 141
               LR +I   +  N NM+G
Sbjct: 154 EAAKLRVQIGNLQNSNRNMLG 154

[Close]

BLAST of Lsi01G002050.1 vs. NCBI nr
Match: gi|659078387|ref|XP_008439701.1| (PREDICTED: floral homeotic protein AGAMOUS isoform X2 [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 4.9e-40
Identity = 103/141 (73.05%), Postives = 106/141 (75.18%), Query Frame = 1


Query: 1   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 60
           MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG
Sbjct: 9   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 68

Query: 61  RLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHN 120
           RLYEYANNS                  VKATIDRYKKASSDSSNTGSTSEANTQ      
Sbjct: 69  RLYEYANNS------------------VKATIDRYKKASSDSSNTGSTSEANTQ--FYQQ 128

Query: 121 NNQLLRAKIAESER-NVNMMG 141
               LR +I   +  N NM+G
Sbjct: 129 EAAKLRVQIGNLQNSNRNMLG 129

[Close]

BLAST of Lsi01G002050.1 vs. NCBI nr
Match: gi|793420667|ref|NP_001292633.1| (floral homeotic protein AGAMOUS [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 4.9e-40
Identity = 103/141 (73.05%), Postives = 106/141 (75.18%), Query Frame = 1


Query: 1   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 60
           MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG
Sbjct: 9   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 68

Query: 61  RLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHN 120
           RLYEYANNS                  VKATIDRYKKASSDSSNTGSTSEANTQ      
Sbjct: 69  RLYEYANNS------------------VKATIDRYKKASSDSSNTGSTSEANTQ--FYQQ 128

Query: 121 NNQLLRAKIAESER-NVNMMG 141
               LR +I   +  N NM+G
Sbjct: 129 EAAKLRVQIGNLQNSNRNMLG 129

[Close]

BLAST of Lsi01G002050.1 vs. NCBI nr
Match: gi|700194139|gb|KGN49343.1| (hypothetical protein Csa_6G520410 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 4.9e-40
Identity = 103/141 (73.05%), Postives = 106/141 (75.18%), Query Frame = 1


Query: 1   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 60
           MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG
Sbjct: 654 MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 713

Query: 61  RLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHN 120
           RLYEYANNS                  VKATIDRYKKASSDSSNTGSTSEANTQ      
Sbjct: 714 RLYEYANNS------------------VKATIDRYKKASSDSSNTGSTSEANTQ--FYQQ 773

Query: 121 NNQLLRAKIAESER-NVNMMG 141
               LR +I   +  N NM+G
Sbjct: 774 EAAKLRVQIGNLQNSNRNMLG 774

The following BLAST results are available for this feature:

BLAST of Lsi01G002050.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AG_TOBAC	9.2e-39	69.57	Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1	[more]
AG_SOLLC	1.2e-38	68.84	Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1	[more]
AG_PETHY	7.8e-38	68.12	Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=1 SV=1	[more]
AG_PANGI	1.9e-36	64.75	Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1	[more]
AG_BRANA	2.1e-35	63.31	Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1	[more]

BLAST of Lsi01G002050.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B2SN08_GLYSO	2.4e-41	59.50	Floral homeotic protein AGAMOUS OS=Glycine soja GN=glysoja_015506 PE=4 SV=1	[more]
Q1WG48_MOMCH	3.4e-40	73.05	MADS box 2 OS=Momordica charantia GN=MCAG2 PE=2 SV=1	[more]
A0A0A0KID6_CUCSA	3.4e-40	73.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G520410 PE=4 SV=1	[more]
Q9SBK1_CUCSA	3.4e-40	73.05	Agamous-like putative transcription factor OS=Cucumis sativus GN=CAG3 PE=2 SV=1	[more]
O64958_CUCSA	3.4e-40	73.05	CUM1 OS=Cucumis sativus GN=CUM1 PE=2 SV=1	[more]

BLAST of Lsi01G002050.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18960.1	7.8e-36	62.59	K-box region and MADS-box transcription factor family protein	[more]
AT3G58780.3	8.6e-35	67.83	K-box region and MADS-box transcription factor family protein	[more]
AT2G42830.2	6.2e-33	68.52	K-box region and MADS-box transcription factor family protein	[more]
AT4G09960.3	6.8e-32	58.96	K-box region and MADS-box transcription factor family protein	[more]
AT5G15800.2	9.9e-23	58.51	K-box region and MADS-box transcription factor family protein	[more]

BLAST of Lsi01G002050.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|734436332\|gb\|KHN48036.1\|	3.4e-41	59.50	Floral homeotic protein AGAMOUS [Glycine soja]	[more]
gi\|778721214\|ref\|XP_011658265.1\|	4.9e-40	73.05	PREDICTED: floral homeotic protein AGAMOUS isoform X1 [Cucumis sativus]	[more]
gi\|659078387\|ref\|XP_008439701.1\|	4.9e-40	73.05	PREDICTED: floral homeotic protein AGAMOUS isoform X2 [Cucumis melo]	[more]
gi\|793420667\|ref\|NP_001292633.1\|	4.9e-40	73.05	floral homeotic protein AGAMOUS [Cucumis sativus]	[more]
gi\|700194139\|gb\|KGN49343.1\|	4.9e-40	73.05	hypothetical protein Csa_6G520410 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi01G002050	Lsi01G002050	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi01G002050.1	Lsi01G002050.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi01G002050.1.three_prime_UTR.2	Lsi01G002050.1.three_prime_UTR.2	three_prime_UTR
Lsi01G002050.1.three_prime_UTR.1	Lsi01G002050.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi01G002050.1.CDS.5	Lsi01G002050.1.CDS.5	CDS
Lsi01G002050.1.CDS.4	Lsi01G002050.1.CDS.4	CDS
Lsi01G002050.1.CDS.3	Lsi01G002050.1.CDS.3	CDS
Lsi01G002050.1.CDS.2	Lsi01G002050.1.CDS.2	CDS
Lsi01G002050.1.CDS.1	Lsi01G002050.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi01G002050.1.five_prime_UTR.2	Lsi01G002050.1.five_prime_UTR.2	five_prime_UTR
Lsi01G002050.1.five_prime_UTR.1	Lsi01G002050.1.five_prime_UTR.1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 31..46 score: 2.2E-33coord: 46..67 score: 2.2E-33coord: 11..31 score: 2.2
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 18..65 score: 5.3
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 9..68 score: 1.1
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 11..65 scor
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 9..69 score: 34
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 10..83 score: 1.44
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 10..69 score: 6.9E-78coord: 88..178 score: 6.9
None	No IPR available	PANTHER	PTHR11945:SF170	AGAMOUS-LIKE MADS-BOX PROTEIN AGL11	coord: 10..69 score: 6.9E-78coord: 88..178 score: 6.9