Lsi01G002050 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G002050
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionAgamous MADS-box transcription factor 1b
Locationchr01 : 1920957 .. 1927222 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTACTTCCATTTCCCTCTTCTCTTCTCCTAATCTTTCTGAATACAAGCTGTGTGTGTAGGGAGATTTCATAAAGACAGCAAACAGCCCTTCTTTTTGTTCTGTCTTAAAAGTTCCTTCTTCAACCAGCTCTTTTCCTCATCAGGTTAGTGATCAAAATACTAGAACAAATAACTCAATACTTGAACAACATTTCAGTATTGTCCCCAAATCTCTCTCTCTTGAACCAAAAGAACAGCAGCTTAGATTTCAGCTTCTGATTGTGCTGTTCATTCCACCTGTAAATCCATAAAAATGAGAATGAAAGAACATTACTTTTGCCCCAAAAATTGCATCTCACAACTTATCTCTTCTCTTTTCTTATGGGATCAACAGTAGTCAGGAAAATGGAAGGAAAAAAAATGAAGATTTGGGTTTTGATTGATGACTGATCTGTTTGGAATTTGATTTAGGTAAGTTGCAAATAAAGGGGTTCCAGAATCAAGAAGAGAAGATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGTTTGCTCAAAAAAGCTTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGGTAAAACAAAAACACTATTATTACATCTCTTTCATTTTCATTATTTACAGATTTTTACATTGTTTTTTTCAAATTAAATGTTCCTTTCTCCCTCAAACTTGTAACTGATTTGGGTCTTGGAAGTTTTCTAAGTAGAGTTTTTAGGTAAGGGGCAAGATTTTGGGAATCTGGGTTGTATTGAGAATATAGTCAATTTGTTTGGAAGATTTGAGTTGTATGAAATGAAAATTTACCAAATTTCTTTTTTCCTTTTGCTTCTTCTTTTCCCTGAGTTGTGTTTTTACTTGTATGAGTTTGTGGGGATTTGTTTTCTGATTTTTTTTGCTATAATTGTATCAGTTTGCTGGTTCTTGGTTTGGTGGATACATAGATCTGGTGTAACAGATGGAAAGATAGGGCATATTATGGAATGGTTATTGGAAGGTTGAAAGGAGTAAGGGTTTTGGTAAACTTATGGTGGTCTCTGAGATCACCTCTTTACCTTACCTTCCTCCATTGTTTAAAGTTTCTGTTTCTTTCCTTTTTACTTCCATTGTTTCTTTCTTTCTCTCTCTGTCTATATGTCATCTCATTAGTCCAATCCTCTTCATCTCCTTGACATTTCCTTAATAGAAACGTCAGTTGGATATTAAGAAAGAGAAAGTACAGTTTCAAAACTTTGTCAAAAGACCATATAGAAATAAGCTTATTAGGGTTTCAAACCCAAAGAAAAGGGTAAAAGAAAAGAAGAAAGAAAAACTTGTAGGTTTCCTTGAAACATGCTAAAACACCCTTTTCCAACCAATCACCTCCAAGTCAAGATTGAACTGCCTTATTGGTTTCCATTCAAACCCTGAAATAAAAATCTCATTAGCTCATCTTTGTTTTTTCCAAATATAAATTAATCAATCAAGCTTTGTCTGAATTATTAATAGGTAAACCTCAGATTAAACATGTTTTAAAAATAAAAAAAATAAAAAAAAAAAACCCTAAGACAAATTTAGGGGAAATAATTTTTATTTTTTTAAAAAAAAGGAGGGGAAAAAGCGTAGCTTTTCTACCACAAACAAACGGAGCCAATAGCAAGTCAGAAACTTTACACAAGTTTTATGTTTGTCTCCATTGTTTGGGAAAAGGGGTGTCTGGTGTTAGGGTTTTTGGTTCTGATTTTTGGTCTAGGGCTTCAAGAATCTTTAGTCACGTCACTCAAGATTTTTCAGTTTTCAGCCTCTCTGACAAACAAAAGGGTTTCTGTCACAATTTCTAAAATGGGTTTCATTTTATTTTCCCACTTCAGATTCAATTCAATTTCAAGTCCTCCCACCAATTTCTTTTCAAACCCTTACACATCTCTCTTATAACCCATTCCCCCAAAATCTCTCTTTCTCATACCCATGCCCCAAAATCTCTCCTTTCCTCCTCTCTTTCAAACTCCAAATCAGAGAAGGATGATTCGATGGAAGAAGAAACTAAATGGGGTTCTTCAGTTTACCAAAAATTTTGAATCTTTATACAAAAAAAAAGGTATTTTTAGAGAGAGAGAGATTAGGGTACGGAAACTGGTAGAGCCAAGCCAATGGGAGAGCTTGAGCATTTATCTTAATAGGACAGCTACGGCAGCCACTGATTGAAACGGACGGCTATGATGTACACAGAGTTTGAGACACAAGGCTTTTACCGTCAATTTCTTTTTCTAAGGTTTTAATGTTGTATCGAGGTGGATAAGAGGATGTAATTAAGTTGATTGTCCACTGAACAATTTTATCTAATGACACTTGGCAAATTCTTGACCCTTGATTTGATTAAGCCAATCATAATGCATGATCTCTGCCAGCATGTTTCAGACAGCCAATCACCAGCTCGACGAAATTAAGGTATCAGTGCATCGGTAAAGGAAATTATGGATATATGCTTCAAATAAATGATATTTAAATGTGCGAACTTTTTTCTTTTTACCTTAAACTTTACATTCTGTCACATCTATTGAGAGGCAATTGACCCCTTTGAAGTGATTTCTATCATTCATTTTACTTTTTGTGGGGTTTTCGTGAAGGATTCAGTTAACTGAGAGAGTTGGGTTAATGTGACAGTTTAGAAAGATGTCCCTTTTTTATAATCAAAAACATGTTTTAATGCTTTGATTATTTTGTTTGTACTTTACTATATTGTTTACCCTGTGTGGAAGATCATCATAATTTTACTTTAATCAACGTTGCATGATTAAGGAGTCTCAATCAACGTGATAATGGTATTAATTTGGATTATACCTTGGTTAATTGCAGTGTGAAGGCAACAATTGATAGATACAAGAAGGCATCCTCAGATTCCTCTAACACTGGATCTACTTCTGAAGCTAACACTCAGGTACATTTTAATTTCACCAAATTTAGAGAGGAATGACTGTTCATCTGAGTGTTGGAGATGGAAGATAACTTAATACATCAAATAATGGAGTCCAAAAGAAAATTAGATGAAGAATATATATAAATACTCACACTTAAGTTCAAGCATAGAAGTAAGGAATTTCAATTTTGACCTAAAATACGGTAAATGATGTAGCTCAGGTCAACAATAGAGTAACTAAATATGGAGAATAAAACAATGAAATTGTTAAGCTCCATAATTATGAGCAAACTTTGAACTTTTTGAGTTCACTGAATTTGTAATTATGTGTAAAGATGTAATAAAGAATTAAACATATTTGTCAAAAAATTTGCTAATGTGAGTTCAACTGAGTGATGTTACAAATAACTAAAATACGGCTGGATGTTCGACTTATCATTTCAAGCTTCAATGATTACAACCTCTCATCAATGTTTCTAAACTTGGCTGCCTTGATGTAATTTTCTGTTGTTGCTTTTAGGCTTCCCTCTAGCCCTGGCCGATTGTTTTGTTATTCATTCATTAATGAAATGAGTAATGGAATATGATGAGAGTGTTAGGAATGTATCAATATAATTGAGATAAATCGATGCACCTACGGATCTACGTTTTATCTTTTTCTAAAGAAAAGTACATTATAAATAATTGTAGAGAAATTACATAATTAGTGTATCATTAAAAAAAAATTATCTTAAAACACTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAGAAAAAAAAAAAGGAATTCTACTTCACTAACTTTTTGATGGTCACAAATGCTTGGAATGAGTACTTAGAGATTGATTTTAAGTTGAACAAATTTTCTATAGATTCTACAAGACTTTAAATTAAACGAAGAAAAAACCATGTGTTTGTGTTTATTTTTTGCATGAATATTTTAAGGAGTAGTTGATTTTGAAATTGTTAAAATCACTTCTGTTGTTATTTAAAATCAGTTTTGATGGTAAAAAAACCAGGTTCAAATATTAAATTGATTATGTATGATTAAATGAAATTTTCTGAATGAAATCATGTCAGACTTACTCCTTAGGCGTGCTCCATGATAATAGTAACATTCTACAAAAATACAAATCTTAGGGCACTTAGTCTTCTTGAAAATTTTAATTTTGTATTGCCCTTTTGATCTATCAAGTTTTCAATGACATGTATATTTGCCATATATGGTTTCCTGAAATTGATAATGAATTCTGATTAGCTAAATTATAGTTCCTTTATCCTACTAAATAACAACGCTATTTCATATCTTACCCCAACTATATTTATCCCCAATGAGCCCAGGGGTGTTTCCCCTATTAGCTTCAGCTTTTCAGTTCCGTGTTGATTTAGTAATAATTGTGATTGAAAATTGAGATCCACTCCAAAGCATTGAATTCAACTTCTTAATTAACCCTTAAACTGGGCAAACTCACTATTGAATCACAAACCAGTTTTACCAACAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTACAGAACTCAAACAGGTATTTTGAAGGAAAGTTATTCAATGACATTTCCGTTAATTCACAATTTCAAAGTTTGTCATCTTCTAAAGAAAGTTGTTTTTCCAGGAACATGCTGGGCGAGTCTCTAAGTTCTTTGAGTGTAAAAGATCTCAAAAGCCTTGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGATCCAAAAAGGTTTATTTTAATTTCATTCTTGTTTTTGAACTATATCTTTGAGAAACTCATTAGTTAACAACTTTTCTTTTCTTGCTCTCTCTCTCTCTCTTCCAGAATGAACTCCTCTTTGCTGAAATTGAGTATATGCGGAAAAGGGTAAATTTTCATATCCCAATTTGACCATACTAATGCTCTTGAGAAAGCATCTTCTAATTCATTATAATGCATTCTGGAGGTTTAATTTCTTGCTGCATTTGGGTATTTGAATTTGAGTATATACATACATGTGAATACAACGAAAGTGAAAGATAAGAGTATTGAAATTCTGTTCTTGAAAATAGAGGGTCTGAGTTGGAAAGTCGTTAGATTGGCTATCAAAATGGCCAATTAATTTCATGGTGAGGAAACTGATAATCATCTATTGAAGTCTACAATAATGAAACCTAAATTTCTAGGAAAAATGACGATCAATTTCAGGCAAAAGAAAGAAAAATTGTGAGTGAAAATTCTTGTGTGGCAGTTGAGAATATGCTGTTAATGTGAATATGAAGAAAAAGGGGGCACCAAGAAAACTAGAAACAACTTTTCCTTTTCAACCACTACGTCTGGATCGCATTAGCTAAACCCAAGTAATTGTTTGGTGAAAATGAAACAACTTTCCAAATGGGTTGTTTGAAAGTTTAATTTTTCCAACCAGGGTTTCATTGATTTTCTTCTAAATCATAGAAAATATTAATATAATGAAGTGATTGTGTATAAAAATTTGTTCTTTTACAGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGGTCTCTTTAATTAATTAATTTCTTCAATCTGTCTGTGTGTTATGAGCATTTAAAATTAAAATTTATAGAGAAATGGTTGCAGATAGCCGAGAGTGAACGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAGTATCCACGCCAAGACAACATGGCTCTTCAATTAGTTTAAAGGTTCTGTTTGTTCGTTTGTTTTTACAGTTAAATGAAGCCATTGTGTCTTTATCTAACAAAATACCAACCAAACATTTCGTTGCAGTTAATAATAAAATGGTTGGAAGCACTCTGATTAGTGGATTTGGATTATAAGGAGTGCAGACCATTTGCAGATTGAAAGGTACTCAAAAGGAAGTTGAAGAAAGAAGATCATTTCTCATTTATGCCTTAACAAAAGTCTTAGCTTTTTCTGGACTCTAAAAAAGACTTATTCTAATATATAAATATAATGTGTAATGTTGTTGTATGGTATGCTTCCAAAAACATTAATAACCTATCTTTGTCTTAAATTTATGTCTCTTTGATACAAACCACTAACATATATTTTCTCATGCTTCTG

mRNA sequence

CTTACTTCCATTTCCCTCTTCTCTTCTCCTAATCTTTCTGAATACAAGCTGTGTGTGTAGGGAGATTTCATAAAGACAGCAAACAGCCCTTCTTTTTGTTCTGTCTTAAAAGTTCCTTCTTCAACCAGCTCTTTTCCTCATCAGGTAAGTTGCAAATAAAGGGGTTCCAGAATCAAGAAGAGAAGATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGTTTGCTCAAAAAAGCTTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGCATGTTTCAGACAGCCAATCACCAGCTCGACGAAATTAAGGTATCAGTGCATCGTGTGAAGGCAACAATTGATAGATACAAGAAGGCATCCTCAGATTCCTCTAACACTGGATCTACTTCTGAAGCTAACACTCAGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCCGAGAGTGAACGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAGTATCCACGCCAAGACAACATGGCTCTTCAATTAGTTTAAAGTTAATAATAAAATGGTTGGAAGCACTCTGATTAGTGGATTTGGATTATAAGGAGTGCAGACCATTTGCAGATTGAAAGGTACTCAAAAGGAAGTTGAAGAAAGAAGATCATTTCTCATTTATGCCTTAACAAAAGTCTTAGCTTTTTCTGGACTCTAAAAAAGACTTATTCTAATATATAAATATAATGTGTAATGTTGTTGTATGGTATGCTTCCAAAAACATTAATAACCTATCTTTGTCTTAAATTTATGTCTCTTTGATACAAACCACTAACATATATTTTCTCATGCTTCTG

Coding sequence (CDS)

ATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGTTTGCTCAAAAAAGCTTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGCATGTTTCAGACAGCCAATCACCAGCTCGACGAAATTAAGGTATCAGTGCATCGTGTGAAGGCAACAATTGATAGATACAAGAAGGCATCCTCAGATTCCTCTAACACTGGATCTACTTCTGAAGCTAACACTCAGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCCGAGAGTGAACGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAGTATCCACGCCAAGACAACATGGCTCTTCAATTAGTTTAA

Protein sequence

MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHNNNQLLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALQLV
Homology
[Close]
BLAST of Lsi01G002050 vs. Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 9.2e-39
Identity = 96/138 (69.57%), Postives = 102/138 (73.91%), Query Frame = 1 

Query: 4   SPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 63
           SPQRK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY
Sbjct: 12  SPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 71

Query: 64  EYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHNNNQ 123
           EYANNS                  VKATI+RYKKA SDSSNTGS SEAN Q      +  
Sbjct: 72  EYANNS------------------VKATIERYKKACSDSSNTGSISEANAQYYQQEASK- 129

Query: 124 LLRAKIAE-SERNVNMMG 141
            LRA+I     +N NM+G
Sbjct: 132 -LRAQIGNLQNQNRNMLG 129

[Close]
BLAST of Lsi01G002050 vs. Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-38
Identity = 95/138 (68.84%), Postives = 102/138 (73.91%), Query Frame = 1 

Query: 4   SPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 63
           SPQRK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFS+RGRLY
Sbjct: 12  SPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLY 71

Query: 64  EYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHNNNQ 123
           EYANNS                  VKATI+RYKKA SDSSNTGS SEAN Q      +  
Sbjct: 72  EYANNS------------------VKATIERYKKACSDSSNTGSVSEANAQYYQQEASK- 129

Query: 124 LLRAKIAE-SERNVNMMG 141
            LRA+I     +N NMMG
Sbjct: 132 -LRAQIGNLMNQNRNMMG 129

[Close]
BLAST of Lsi01G002050 vs. Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.8e-38
Identity = 94/138 (68.12%), Postives = 101/138 (73.19%), Query Frame = 1 

Query: 4   SPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 63
           SPQRK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY
Sbjct: 12  SPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 71

Query: 64  EYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHNNNQ 123
           EYANNS                  VKATI+RYKKA SDSSNTGS +EAN Q      +  
Sbjct: 72  EYANNS------------------VKATIERYKKACSDSSNTGSIAEANAQYYQQEASK- 129

Query: 124 LLRAKIAE-SERNVNMMG 141
            LRA+I     +N N +G
Sbjct: 132 -LRAQIGNLQNQNRNFLG 129

[Close]
BLAST of Lsi01G002050 vs. Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.9e-36
Identity = 90/139 (64.75%), Postives = 99/139 (71.22%), Query Frame = 1 

Query: 4   SPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 63
           SPQRK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLY
Sbjct: 12  SPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLY 71

Query: 64  EYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHNNNQ 123
           EYANNS                  VK TI+RYKKA +DS NT S SEAN Q      +  
Sbjct: 72  EYANNS------------------VKGTIERYKKACTDSPNTSSVSEANAQFYQQEASK- 130

Query: 124 LLRAKIAESERNVNMMGGE 143
            LR +I+  ++N   M GE
Sbjct: 132 -LRQEISSIQKNNRNMMGE 130

[Close]
BLAST of Lsi01G002050 vs. Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-35
Identity = 88/139 (63.31%), Postives = 97/139 (69.78%), Query Frame = 1 

Query: 4   SPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 63
           SPQRK GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY
Sbjct: 12  SPQRKAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 71

Query: 64  EYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHNNNQ 123
           EY+NNS                  VK TI+RYKKA SD+SNTGS +E N Q       + 
Sbjct: 72  EYSNNS------------------VKGTIERYKKAISDNSNTGSVAEINAQY--YQQESA 130

Query: 124 LLRAKIAESERNVNMMGGE 143
            LR +I   + +   + GE
Sbjct: 132 KLRQQIISIQNSNRQLMGE 130

[Close]
BLAST of Lsi01G002050 vs. TrEMBL
Match: A0A0B2SN08_GLYSO (Floral homeotic protein AGAMOUS OS=Glycine soja GN=glysoja_015506 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.4e-41
Identity = 119/200 (59.50%), Postives = 132/200 (66.00%), Query Frame = 1 

Query: 2   SDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGR 61
           S+SPQRKMGRGKIEIKRIENTT+RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGR
Sbjct: 10  SESPQRKMGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGR 69

Query: 62  LYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTG-STSEANTQ------ 121
           LYEYANNS                  VKA+I+RYKKASSDSS+ G S SEAN Q      
Sbjct: 70  LYEYANNS------------------VKASIERYKKASSDSSSGGRSASEANAQFYQQEA 129

Query: 122 --------EIDLHNNNQLLRAKIAESER---NVNMMGG--EFELMQSHPYDPRDFFQVNG 180
                    +  HN    L   I E ER   NVN + G   +E MQS  +D R FFQV G
Sbjct: 130 AKLRVQISNLQNHNRQVALVVHIGEGERSHHNVNGLSGSTSYESMQSQ-FDSRGFFQVTG 189

[Close]
BLAST of Lsi01G002050 vs. TrEMBL
Match: Q1WG48_MOMCH (MADS box 2 OS=Momordica charantia GN=MCAG2 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.4e-40
Identity = 103/141 (73.05%), Postives = 106/141 (75.18%), Query Frame = 1 

Query: 1   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 60
           MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG
Sbjct: 1   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 60

Query: 61  RLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHN 120
           RLYEYANNS                  VKATIDRYKKASSDSSNTGSTSEANTQ      
Sbjct: 61  RLYEYANNS------------------VKATIDRYKKASSDSSNTGSTSEANTQ--FYQQ 120

Query: 121 NNQLLRAKIAESER-NVNMMG 141
               LR +I   +  N NM+G
Sbjct: 121 EAAKLRVQIGNLQNSNRNMLG 121

[Close]
BLAST of Lsi01G002050 vs. TrEMBL
Match: A0A0A0KID6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G520410 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.4e-40
Identity = 103/141 (73.05%), Postives = 106/141 (75.18%), Query Frame = 1 

Query: 1   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 60
           MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG
Sbjct: 654 MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 713

Query: 61  RLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHN 120
           RLYEYANNS                  VKATIDRYKKASSDSSNTGSTSEANTQ      
Sbjct: 714 RLYEYANNS------------------VKATIDRYKKASSDSSNTGSTSEANTQ--FYQQ 773

Query: 121 NNQLLRAKIAESER-NVNMMG 141
               LR +I   +  N NM+G
Sbjct: 774 EAAKLRVQIGNLQNSNRNMLG 774

[Close]
BLAST of Lsi01G002050 vs. TrEMBL
Match: Q9SBK1_CUCSA (Agamous-like putative transcription factor OS=Cucumis sativus GN=CAG3 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.4e-40
Identity = 103/141 (73.05%), Postives = 106/141 (75.18%), Query Frame = 1 

Query: 1   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 60
           MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG
Sbjct: 9   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 68

Query: 61  RLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHN 120
           RLYEYANNS                  VKATIDRYKKASSDSSNTGSTSEANTQ      
Sbjct: 69  RLYEYANNS------------------VKATIDRYKKASSDSSNTGSTSEANTQ--FYQQ 128

Query: 121 NNQLLRAKIAESER-NVNMMG 141
               LR +I   +  N NM+G
Sbjct: 129 EAAKLRVQIGNLQNSNRNMLG 129

[Close]
BLAST of Lsi01G002050 vs. TrEMBL
Match: O64958_CUCSA (CUM1 OS=Cucumis sativus GN=CUM1 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.4e-40
Identity = 103/141 (73.05%), Postives = 106/141 (75.18%), Query Frame = 1 

Query: 1   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 60
           MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG
Sbjct: 34  MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 93

Query: 61  RLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHN 120
           RLYEYANNS                  VKATIDRYKKASSDSSNTGSTSEANTQ      
Sbjct: 94  RLYEYANNS------------------VKATIDRYKKASSDSSNTGSTSEANTQ--FYQQ 153

Query: 121 NNQLLRAKIAESER-NVNMMG 141
               LR +I   +  N NM+G
Sbjct: 154 EAAKLRVQIGNLQNSNRNMLG 154

[Close]
BLAST of Lsi01G002050 vs. TAIR10
Match: AT4G18960.1 (AT4G18960.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 147.5 bits (371), Expect = 7.8e-36
Identity = 87/139 (62.59%), Postives = 96/139 (69.06%), Query Frame = 1 

Query: 4   SPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 63
           SP RK GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY
Sbjct: 12  SPLRKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 71

Query: 64  EYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHNNNQ 123
           EY+NNS                  VK TI+RYKKA SD+SNTGS +E N Q       + 
Sbjct: 72  EYSNNS------------------VKGTIERYKKAISDNSNTGSVAEINAQY--YQQESA 130

Query: 124 LLRAKIAESERNVNMMGGE 143
            LR +I   + +   + GE
Sbjct: 132 KLRQQIISIQNSNRQLMGE 130

[Close]
BLAST of Lsi01G002050 vs. TAIR10
Match: AT3G58780.3 (AT3G58780.3 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 144.1 bits (362), Expect = 8.6e-35
Identity = 78/115 (67.83%), Postives = 89/115 (77.39%), Query Frame = 1 

Query: 7   RKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 66
           +K+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYEYA
Sbjct: 14  KKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 73

Query: 67  NNSMFQTANHQLDEIK-------VSVHRVKATIDRYKKASSDSSNTGSTSEANTQ 115
           NNS       +  + K        S H V+ TI+RYKKA SD+ N  S +EANTQ
Sbjct: 74  NNSFIYLLLEKKKKKKKKKNLWIYSSHVVRGTIERYKKACSDAVNPPSVTEANTQ 128

[Close]
BLAST of Lsi01G002050 vs. TAIR10
Match: AT2G42830.2 (AT2G42830.2 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 137.9 bits (346), Expect = 6.2e-33
Identity = 74/108 (68.52%), Postives = 84/108 (77.78%), Query Frame = 1 

Query: 7   RKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 66
           +K+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYEYA
Sbjct: 14  KKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 73

Query: 67  NNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQ 115
           NNS                  V+ TI+RYKKA SD+ N  + +EANTQ
Sbjct: 74  NNS------------------VRGTIERYKKACSDAVNPPTITEANTQ 103

[Close]
BLAST of Lsi01G002050 vs. TAIR10
Match: AT4G09960.3 (AT4G09960.3 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 134.4 bits (337), Expect = 6.8e-32
Identity = 79/134 (58.96%), Postives = 93/134 (69.40%), Query Frame = 1 

Query: 8   KMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 67
           +MGRGKIEIKRIEN+TNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEYAN
Sbjct: 26  RMGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYAN 85

Query: 68  NSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHNNNQLLRA 127
           N+                  +++TI+RYKKA SDS+NT +  E N         +  LR 
Sbjct: 86  NN------------------IRSTIERYKKACSDSTNTSTVQEINAAY--YQQESAKLRQ 139

Query: 128 KIAESER-NVNMMG 141
           +I   +  N N+MG
Sbjct: 146 QIQTIQNSNRNLMG 139

[Close]
BLAST of Lsi01G002050 vs. TAIR10
Match: AT5G15800.2 (AT5G15800.2 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 104.0 bits (258), Expect = 9.9e-23
Identity = 55/94 (58.51%), Postives = 67/94 (71.28%), Query Frame = 1 

Query: 9   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 68
           MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ ++
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 69  SMFQTANHQLDEIKVSVHRVKATIDRYKKASSDS 103
           S                  +  T+DRY+K S  S
Sbjct: 61  S-----------------NMLKTLDRYQKCSYGS 77

[Close]
BLAST of Lsi01G002050 vs. NCBI nr
Match: gi|734436332|gb|KHN48036.1| (Floral homeotic protein AGAMOUS [Glycine soja])

HSP 1 Score: 176.8 bits (447), Expect = 3.4e-41
Identity = 119/200 (59.50%), Postives = 132/200 (66.00%), Query Frame = 1 

Query: 2   SDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGR 61
           S+SPQRKMGRGKIEIKRIENTT+RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGR
Sbjct: 10  SESPQRKMGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGR 69

Query: 62  LYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTG-STSEANTQ------ 121
           LYEYANNS                  VKA+I+RYKKASSDSS+ G S SEAN Q      
Sbjct: 70  LYEYANNS------------------VKASIERYKKASSDSSSGGRSASEANAQFYQQEA 129

Query: 122 --------EIDLHNNNQLLRAKIAESER---NVNMMGG--EFELMQSHPYDPRDFFQVNG 180
                    +  HN    L   I E ER   NVN + G   +E MQS  +D R FFQV G
Sbjct: 130 AKLRVQISNLQNHNRQVALVVHIGEGERSHHNVNGLSGSTSYESMQSQ-FDSRGFFQVTG 189

[Close]
BLAST of Lsi01G002050 vs. NCBI nr
Match: gi|778721214|ref|XP_011658265.1| (PREDICTED: floral homeotic protein AGAMOUS isoform X1 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 4.9e-40
Identity = 103/141 (73.05%), Postives = 106/141 (75.18%), Query Frame = 1 

Query: 1   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 60
           MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG
Sbjct: 34  MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 93

Query: 61  RLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHN 120
           RLYEYANNS                  VKATIDRYKKASSDSSNTGSTSEANTQ      
Sbjct: 94  RLYEYANNS------------------VKATIDRYKKASSDSSNTGSTSEANTQ--FYQQ 153

Query: 121 NNQLLRAKIAESER-NVNMMG 141
               LR +I   +  N NM+G
Sbjct: 154 EAAKLRVQIGNLQNSNRNMLG 154

[Close]
BLAST of Lsi01G002050 vs. NCBI nr
Match: gi|659078387|ref|XP_008439701.1| (PREDICTED: floral homeotic protein AGAMOUS isoform X2 [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 4.9e-40
Identity = 103/141 (73.05%), Postives = 106/141 (75.18%), Query Frame = 1 

Query: 1   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 60
           MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG
Sbjct: 9   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 68

Query: 61  RLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHN 120
           RLYEYANNS                  VKATIDRYKKASSDSSNTGSTSEANTQ      
Sbjct: 69  RLYEYANNS------------------VKATIDRYKKASSDSSNTGSTSEANTQ--FYQQ 128

Query: 121 NNQLLRAKIAESER-NVNMMG 141
               LR +I   +  N NM+G
Sbjct: 129 EAAKLRVQIGNLQNSNRNMLG 129

[Close]
BLAST of Lsi01G002050 vs. NCBI nr
Match: gi|793420667|ref|NP_001292633.1| (floral homeotic protein AGAMOUS [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 4.9e-40
Identity = 103/141 (73.05%), Postives = 106/141 (75.18%), Query Frame = 1 

Query: 1   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 60
           MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG
Sbjct: 9   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 68

Query: 61  RLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHN 120
           RLYEYANNS                  VKATIDRYKKASSDSSNTGSTSEANTQ      
Sbjct: 69  RLYEYANNS------------------VKATIDRYKKASSDSSNTGSTSEANTQ--FYQQ 128

Query: 121 NNQLLRAKIAESER-NVNMMG 141
               LR +I   +  N NM+G
Sbjct: 129 EAAKLRVQIGNLQNSNRNMLG 129

[Close]
BLAST of Lsi01G002050 vs. NCBI nr
Match: gi|700194139|gb|KGN49343.1| (hypothetical protein Csa_6G520410 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 4.9e-40
Identity = 103/141 (73.05%), Postives = 106/141 (75.18%), Query Frame = 1 

Query: 1   MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 60
           MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG
Sbjct: 654 MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 713

Query: 61  RLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHN 120
           RLYEYANNS                  VKATIDRYKKASSDSSNTGSTSEANTQ      
Sbjct: 714 RLYEYANNS------------------VKATIDRYKKASSDSSNTGSTSEANTQ--FYQQ 773

Query: 121 NNQLLRAKIAESER-NVNMMG 141
               LR +I   +  N NM+G
Sbjct: 774 EAAKLRVQIGNLQNSNRNMLG 774

The following BLAST results are available for this feature:
BLAST of Lsi01G002050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AG_TOBAC9.2e-3969.57Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1[more]
AG_SOLLC1.2e-3868.84Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1[more]
AG_PETHY7.8e-3868.12Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=1 SV=1[more]
AG_PANGI1.9e-3664.75Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1[more]
AG_BRANA2.1e-3563.31Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1[more]
BLAST of Lsi01G002050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B2SN08_GLYSO2.4e-4159.50Floral homeotic protein AGAMOUS OS=Glycine soja GN=glysoja_015506 PE=4 SV=1[more]
Q1WG48_MOMCH3.4e-4073.05MADS box 2 OS=Momordica charantia GN=MCAG2 PE=2 SV=1[more]
A0A0A0KID6_CUCSA3.4e-4073.05Uncharacterized protein OS=Cucumis sativus GN=Csa_6G520410 PE=4 SV=1[more]
Q9SBK1_CUCSA3.4e-4073.05Agamous-like putative transcription factor OS=Cucumis sativus GN=CAG3 PE=2 SV=1[more]
O64958_CUCSA3.4e-4073.05CUM1 OS=Cucumis sativus GN=CUM1 PE=2 SV=1[more]
BLAST of Lsi01G002050 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G18960.17.8e-3662.59 K-box region and MADS-box transcription factor family protein [more]
AT3G58780.38.6e-3567.83 K-box region and MADS-box transcription factor family protein [more]
AT2G42830.26.2e-3368.52 K-box region and MADS-box transcription factor family protein [more]
AT4G09960.36.8e-3258.96 K-box region and MADS-box transcription factor family protein [more]
AT5G15800.29.9e-2358.51 K-box region and MADS-box transcription factor family protein [more]
BLAST of Lsi01G002050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|734436332|gb|KHN48036.1|3.4e-4159.50Floral homeotic protein AGAMOUS [Glycine soja][more]
gi|778721214|ref|XP_011658265.1|4.9e-4073.05PREDICTED: floral homeotic protein AGAMOUS isoform X1 [Cucumis sativus][more]
gi|659078387|ref|XP_008439701.1|4.9e-4073.05PREDICTED: floral homeotic protein AGAMOUS isoform X2 [Cucumis melo][more]
gi|793420667|ref|NP_001292633.1|4.9e-4073.05floral homeotic protein AGAMOUS [Cucumis sativus][more]
gi|700194139|gb|KGN49343.1|4.9e-4073.05hypothetical protein Csa_6G520410 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0048438 floral whorl development
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006468 protein phosphorylation
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0004112 cyclic-nucleotide phosphodiesterase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G002050.1Lsi01G002050.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 31..46
score: 2.2E-33coord: 46..67
score: 2.2E-33coord: 11..31
score: 2.2
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 18..65
score: 5.3
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 9..68
score: 1.1
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 11..65
scor
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 9..69
score: 34
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 10..83
score: 1.44
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 10..69
score: 6.9E-78coord: 88..178
score: 6.9
NoneNo IPR availablePANTHERPTHR11945:SF170AGAMOUS-LIKE MADS-BOX PROTEIN AGL11coord: 10..69
score: 6.9E-78coord: 88..178
score: 6.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G002050Csa1G467100Cucumber (Chinese Long) v2culsiB017
Lsi01G002050CSPI01G21720Wild cucumber (PI 183967)cpilsiB016
Lsi01G002050CSPI06G35750Wild cucumber (PI 183967)cpilsiB439
Lsi01G002050Cucsa.212720Cucumber (Gy14) v1cgylsiB357
Lsi01G002050Cucsa.047280Cucumber (Gy14) v1cgylsiB022
Lsi01G002050CmaCh13G005750Cucurbita maxima (Rimu)cmalsiB199
Lsi01G002050CmaCh03G013550Cucurbita maxima (Rimu)cmalsiB602
Lsi01G002050CmaCh07G001520Cucurbita maxima (Rimu)cmalsiB786
Lsi01G002050CmoCh13G006040Cucurbita moschata (Rifu)cmolsiB189
Lsi01G002050CmoCh03G013520Cucurbita moschata (Rifu)cmolsiB588
Lsi01G002050Cla009725Watermelon (97103) v1lsiwmB144
Lsi01G002050Cla019630Watermelon (97103) v1lsiwmB136
Lsi01G002050MELO3C002691Melon (DHL92) v3.5.1lsimeB127
Lsi01G002050MELO3C007181Melon (DHL92) v3.5.1lsimeB149
Lsi01G002050ClCG01G024100Watermelon (Charleston Gray)lsiwcgB127
Lsi01G002050MELO3C002691.2Melon (DHL92) v3.6.1lsimedB138
Lsi01G002050MELO3C007181.2Melon (DHL92) v3.6.1lsimedB156
Lsi01G002050Cla97C01G024020Watermelon (97103) v2lsiwmbB115
Lsi01G002050Cla97C02G044160Watermelon (97103) v2lsiwmbB129
Lsi01G002050Cla97C03G058570Watermelon (97103) v2lsiwmbB130
Lsi01G002050Bhi03G000010Wax gourdlsiwgoB179
Lsi01G002050Bhi10G000772Wax gourdlsiwgoB164
Lsi01G002050Cp4.1LG20g04840Cucurbita pepo (Zucchini)cpelsiB415
Lsi01G002050Cp4.1LG19g06490Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G002050Cp4.1LG10g05620Cucurbita pepo (Zucchini)cpelsiB049
Lsi01G002050CsGy1G021380Cucumber (Gy14) v2cgyblsiB013
Lsi01G002050CsGy6G035210Cucumber (Gy14) v2cgyblsiB398
Lsi01G002050Carg15373Silver-seed gourdcarlsiB496
Lsi01G002050Carg19905Silver-seed gourdcarlsiB734
Lsi01G002050Carg23097Silver-seed gourdcarlsiB871
Lsi01G002050CsaV3_1G032920Cucumber (Chinese Long) v3cuclsiB016
Lsi01G002050CsaV3_6G051220Cucumber (Chinese Long) v3cuclsiB462
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Lsi01G002050Lsi02G008450Bottle gourd (USVL1VR-Ls)lsilsiB066
The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G002050Silver-seed gourdcarlsiB133
Lsi01G002050Wax gourdlsiwgoB190
Lsi01G002050Cucurbita maxima (Rimu)cmalsiB368
Lsi01G002050Cucurbita moschata (Rifu)cmolsiB354
Lsi01G002050Cucurbita moschata (Rifu)cmolsiB774
Lsi01G002050Cucurbita pepo (Zucchini)cpelsiB021
Lsi01G002050Cucumber (Chinese Long) v2culsiB434
Lsi01G002050Watermelon (Charleston Gray)lsiwcgB133