Cucsa.353150.1 (mRNA) Cucumber (Gy14) v1

Overview
NameCucsa.353150.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold03533 : 784381 .. 784875 (+)
Sequence length495
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGAAGGTGTCAGTATTAAGGAGAAGAGACGAAAGGGCGCGCGAGAACACCGCGGGGGgTACTCTCTTTGTTTATTtGTTTCTCCATACTTCCATTTTCCACTACTCTCTCAATCTCTCATCTCTTTCTGCAAAGGGTCTGCCAACTTCTCCACTTTTCCTTTCAAAACCCTCTCAATCAGACGGAGACCCCAACAAATTTTtGTTTTTCAACCTTTCCATATAACTAGGACCCACACTCCATCCCCATCATATCATACCTTTTCATCTTTTCTTTTCTTATTCTTTCACTGTTTGTTTCTGTTTAGAGAAAAAATGGACTATGTCAATTATCTTAAATCTAAGCTGTATTTAAACCCGTATAAGCAACAAGAAGATATAAATTTGGAAGTGGAGGAAGAGATATAGACATTGAGATGGGATCCTCATTGTAAACCCATGTGGGAGGTGGGGCCTAAGTGAACCAGGTATTTAGGGACAAGGATGGGACTC

mRNA sequence

ATGGGTGAAGGTGTCAGTATTAAGGAGAAGAGACGAAAGGGCGCGCGAGAACACCGCGGGGGGTACTCTCTTTGTTTATTTGTTTCTCCATACTTCCATTTTCCACTACTCTCTCAATCTCTCATCTCTTTCTGCAAAGGGTCTGCCAACTTCTCCACTTTTCCTTTCAAAACCCTCTCAATCAGACGGAGACCCCAACAAATTTTTGTTTTTCAACCTTTCCATATAACTAGGACCCACACTCCATCCCCATCATATCATACCTTTTCATCTTTTCTTTTCTTATTCTTTCACTGTTTGTTTCTGTTTAGAGAAAAAATGGACTATGTCAATTATCTTAAATCTAAGCTGTATTTAAACCCGTATAAGCAACAAGAAGATATAAATTTGGAAGTGGAGGAAGAGATATAGACATTGAGATGGGATCCTCATTGTAAACCCATGTGGGAGGTGGGGCCTAAGTGAACCAGGTATTTAGGGACAAGGATGGGACTC

Coding sequence (CDS)

ATGGGTGAAGGTGTCAGTATTAAGGAGAAGAGACGAAAGGGCGCGCGAGAACACCGCGGGGGgTACTCTCTTTGTTTATTtGTTTCTCCATACTTCCATTTTCCACTACTCTCTCAATCTCTCATCTCTTTCTGCAAAGGGTCTGCCAACTTCTCCACTTTTCCTTTCAAAACCCTCTCAATCAGACGGAGACCCCAACAAATTTTtGTTTTTCAACCTTTCCATATAACTAGGACCCACACTCCATCCCCATCATATCATACCTTTTCATCTTTTCTTTTCTTATTCTTTCACTGTTTGTTTCTGTTTAGAGAAAAAATGGACTATGTCAATTATCTTAAATCTAAGCTGTATTTAAACCCGTATAAGCAACAAGAAGATATAAATTTGGAAGTGGAGGAAGAGATATAG

Protein sequence

MGEGVSIKEKRRKGAREHRGGYSLCLFVSPYFHFPLLSQSLISFCKGSANFSTFPFKTLSIRRRPQQIFVFQPFHITRTHTPSPSYHTFSSFLFLFFHCLFLFREKMDYVNYLKSKLYLNPYKQQEDINLEVEEEI*
Homology
[Close]
BLAST of Cucsa.353150.1 vs. TrEMBL
Match: A0A0A0L2P3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G645845 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 6.2e-74
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MGEGVSIKEKRRKGAREHRGGYSLCLFVSPYFHFPLLSQSLISFCKGSANFSTFPFKTLS 60
           MGEGVSIKEKRRKGAREHRGGYSLCLFVSPYFHFPLLSQSLISFCKGSANFSTFPFKTLS
Sbjct: 1   MGEGVSIKEKRRKGAREHRGGYSLCLFVSPYFHFPLLSQSLISFCKGSANFSTFPFKTLS 60

Query: 61  IRRRPQQIFVFQPFHITRTHTPSPSYHTFSSFLFLFFHCLFLFREKMDYVNYLKSKLYLN 120
           IRRRPQQIFVFQPFHITRTHTPSPSYHTFSSFLFLFFHCLFLFREKMDYVNYLKSKLYLN
Sbjct: 61  IRRRPQQIFVFQPFHITRTHTPSPSYHTFSSFLFLFFHCLFLFREKMDYVNYLKSKLYLN 120

Query: 121 PYKQQEDINLEVEEEI 137
           PYKQQEDINLEVEEEI
Sbjct: 121 PYKQQEDINLEVEEEI 136

[Close]
BLAST of Cucsa.353150.1 vs. NCBI nr
Match: gi|700200151|gb|KGN55309.1| (hypothetical protein Csa_4G645845 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 8.9e-74
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MGEGVSIKEKRRKGAREHRGGYSLCLFVSPYFHFPLLSQSLISFCKGSANFSTFPFKTLS 60
           MGEGVSIKEKRRKGAREHRGGYSLCLFVSPYFHFPLLSQSLISFCKGSANFSTFPFKTLS
Sbjct: 1   MGEGVSIKEKRRKGAREHRGGYSLCLFVSPYFHFPLLSQSLISFCKGSANFSTFPFKTLS 60

Query: 61  IRRRPQQIFVFQPFHITRTHTPSPSYHTFSSFLFLFFHCLFLFREKMDYVNYLKSKLYLN 120
           IRRRPQQIFVFQPFHITRTHTPSPSYHTFSSFLFLFFHCLFLFREKMDYVNYLKSKLYLN
Sbjct: 61  IRRRPQQIFVFQPFHITRTHTPSPSYHTFSSFLFLFFHCLFLFREKMDYVNYLKSKLYLN 120

Query: 121 PYKQQEDINLEVEEEI 137
           PYKQQEDINLEVEEEI
Sbjct: 121 PYKQQEDINLEVEEEI 136

The following BLAST results are available for this feature:
BLAST of Cucsa.353150.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2P3_CUCSA6.2e-74100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G645845 PE=4 SV=1[more]
BLAST of Cucsa.353150.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200151|gb|KGN55309.1|8.9e-74100.00hypothetical protein Csa_4G645845 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsa.353150Cucsa.353150gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsa.353150.1Cucsa.353150.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.353150.1.CDS.1Cucsa.353150.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.353150.1.three_prime_UTR.1Cucsa.353150.1.three_prime_UTR.1three_prime_UTR