Cucsa.353150 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.353150
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold03533 : 784381 .. 784875 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGAAGGTGTCAGTATTAAGGAGAAGAGACGAAAGGGCGCGCGAGAACACCGCGGGGGgTACTCTCTTTGTTTATTtGTTTCTCCATACTTCCATTTTCCACTACTCTCTCAATCTCTCATCTCTTTCTGCAAAGGGTCTGCCAACTTCTCCACTTTTCCTTTCAAAACCCTCTCAATCAGACGGAGACCCCAACAAATTTTtGTTTTTCAACCTTTCCATATAACTAGGACCCACACTCCATCCCCATCATATCATACCTTTTCATCTTTTCTTTTCTTATTCTTTCACTGTTTGTTTCTGTTTAGAGAAAAAATGGACTATGTCAATTATCTTAAATCTAAGCTGTATTTAAACCCGTATAAGCAACAAGAAGATATAAATTTGGAAGTGGAGGAAGAGATATAGACATTGAGATGGGATCCTCATTGTAAACCCATGTGGGAGGTGGGGCCTAAGTGAACCAGGTATTTAGGGACAAGGATGGGACTC

mRNA sequence

ATGGGTGAAGGTGTCAGTATTAAGGAGAAGAGACGAAAGGGCGCGCGAGAACACCGCGGGGGGTACTCTCTTTGTTTATTTGTTTCTCCATACTTCCATTTTCCACTACTCTCTCAATCTCTCATCTCTTTCTGCAAAGGGTCTGCCAACTTCTCCACTTTTCCTTTCAAAACCCTCTCAATCAGACGGAGACCCCAACAAATTTTTGTTTTTCAACCTTTCCATATAACTAGGACCCACACTCCATCCCCATCATATCATACCTTTTCATCTTTTCTTTTCTTATTCTTTCACTGTTTGTTTCTGTTTAGAGAAAAAATGGACTATGTCAATTATCTTAAATCTAAGCTGTATTTAAACCCGTATAAGCAACAAGAAGATATAAATTTGGAAGTGGAGGAAGAGATATAGACATTGAGATGGGATCCTCATTGTAAACCCATGTGGGAGGTGGGGCCTAAGTGAACCAGGTATTTAGGGACAAGGATGGGACTC

Coding sequence (CDS)

ATGGGTGAAGGTGTCAGTATTAAGGAGAAGAGACGAAAGGGCGCGCGAGAACACCGCGGGGGgTACTCTCTTTGTTTATTtGTTTCTCCATACTTCCATTTTCCACTACTCTCTCAATCTCTCATCTCTTTCTGCAAAGGGTCTGCCAACTTCTCCACTTTTCCTTTCAAAACCCTCTCAATCAGACGGAGACCCCAACAAATTTTtGTTTTTCAACCTTTCCATATAACTAGGACCCACACTCCATCCCCATCATATCATACCTTTTCATCTTTTCTTTTCTTATTCTTTCACTGTTTGTTTCTGTTTAGAGAAAAAATGGACTATGTCAATTATCTTAAATCTAAGCTGTATTTAAACCCGTATAAGCAACAAGAAGATATAAATTTGGAAGTGGAGGAAGAGATATAG

Protein sequence

MGEGVSIKEKRRKGAREHRGGYSLCLFVSPYFHFPLLSQSLISFCKGSANFSTFPFKTLSIRRRPQQIFVFQPFHITRTHTPSPSYHTFSSFLFLFFHCLFLFREKMDYVNYLKSKLYLNPYKQQEDINLEVEEEI*
Homology
[Close]
BLAST of Cucsa.353150 vs. TrEMBL
Match: A0A0A0L2P3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G645845 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 6.2e-74
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MGEGVSIKEKRRKGAREHRGGYSLCLFVSPYFHFPLLSQSLISFCKGSANFSTFPFKTLS 60
           MGEGVSIKEKRRKGAREHRGGYSLCLFVSPYFHFPLLSQSLISFCKGSANFSTFPFKTLS
Sbjct: 1   MGEGVSIKEKRRKGAREHRGGYSLCLFVSPYFHFPLLSQSLISFCKGSANFSTFPFKTLS 60

Query: 61  IRRRPQQIFVFQPFHITRTHTPSPSYHTFSSFLFLFFHCLFLFREKMDYVNYLKSKLYLN 120
           IRRRPQQIFVFQPFHITRTHTPSPSYHTFSSFLFLFFHCLFLFREKMDYVNYLKSKLYLN
Sbjct: 61  IRRRPQQIFVFQPFHITRTHTPSPSYHTFSSFLFLFFHCLFLFREKMDYVNYLKSKLYLN 120

Query: 121 PYKQQEDINLEVEEEI 137
           PYKQQEDINLEVEEEI
Sbjct: 121 PYKQQEDINLEVEEEI 136

[Close]
BLAST of Cucsa.353150 vs. NCBI nr
Match: gi|700200151|gb|KGN55309.1| (hypothetical protein Csa_4G645845 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 8.9e-74
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MGEGVSIKEKRRKGAREHRGGYSLCLFVSPYFHFPLLSQSLISFCKGSANFSTFPFKTLS 60
           MGEGVSIKEKRRKGAREHRGGYSLCLFVSPYFHFPLLSQSLISFCKGSANFSTFPFKTLS
Sbjct: 1   MGEGVSIKEKRRKGAREHRGGYSLCLFVSPYFHFPLLSQSLISFCKGSANFSTFPFKTLS 60

Query: 61  IRRRPQQIFVFQPFHITRTHTPSPSYHTFSSFLFLFFHCLFLFREKMDYVNYLKSKLYLN 120
           IRRRPQQIFVFQPFHITRTHTPSPSYHTFSSFLFLFFHCLFLFREKMDYVNYLKSKLYLN
Sbjct: 61  IRRRPQQIFVFQPFHITRTHTPSPSYHTFSSFLFLFFHCLFLFREKMDYVNYLKSKLYLN 120

Query: 121 PYKQQEDINLEVEEEI 137
           PYKQQEDINLEVEEEI
Sbjct: 121 PYKQQEDINLEVEEEI 136

The following BLAST results are available for this feature:
BLAST of Cucsa.353150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2P3_CUCSA6.2e-74100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G645845 PE=4 SV=1[more]
BLAST of Cucsa.353150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200151|gb|KGN55309.1|8.9e-74100.00hypothetical protein Csa_4G645845 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.353150.1Cucsa.353150.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.353150Cucurbita moschata (Rifu)cgycmoB0961
Cucsa.353150Cucurbita moschata (Rifu)cgycmoB0969
Cucsa.353150Cucurbita moschata (Rifu)cgycmoB0963
Cucsa.353150Cucurbita moschata (Rifu)cgycmoB0967
Cucsa.353150Wild cucumber (PI 183967)cgycpiB520
Cucsa.353150Wild cucumber (PI 183967)cgycpiB521
Cucsa.353150Cucumber (Chinese Long) v2cgycuB493
Cucsa.353150Cucumber (Chinese Long) v2cgycuB494
Cucsa.353150Melon (DHL92) v3.5.1cgymeB568
Cucsa.353150Melon (DHL92) v3.5.1cgymeB570
Cucsa.353150Watermelon (Charleston Gray)cgywcgB600
Cucsa.353150Watermelon (Charleston Gray)cgywcgB603
Cucsa.353150Watermelon (97103) v1cgywmB630
Cucsa.353150Watermelon (97103) v1cgywmB632
Cucsa.353150Cucurbita pepo (Zucchini)cgycpeB0921
Cucsa.353150Cucurbita pepo (Zucchini)cgycpeB0919
Cucsa.353150Cucurbita pepo (Zucchini)cgycpeB0923
Cucsa.353150Cucurbita pepo (Zucchini)cgycpeB0925
Cucsa.353150Bottle gourd (USVL1VR-Ls)cgylsiB570
Cucsa.353150Bottle gourd (USVL1VR-Ls)cgylsiB571
Cucsa.353150Melon (DHL92) v3.6.1cgymedB569
Cucsa.353150Melon (DHL92) v3.6.1cgymedB571
Cucsa.353150Silver-seed gourdcarcgyB0224
Cucsa.353150Silver-seed gourdcarcgyB0378
Cucsa.353150Silver-seed gourdcarcgyB0877
Cucsa.353150Cucumber (Chinese Long) v3cgycucB535
Cucsa.353150Cucumber (Chinese Long) v3cgycucB536
Cucsa.353150Watermelon (97103) v2cgywmbB603
Cucsa.353150Watermelon (97103) v2cgywmbB606
Cucsa.353150Wax gourdcgywgoB702
Cucsa.353150Wax gourdcgywgoB706
Cucsa.353150Cucumber (Gy14) v1cgycgyB148
Cucsa.353150Cucurbita maxima (Rimu)cgycmaB0963
Cucsa.353150Cucurbita maxima (Rimu)cgycmaB0960
Cucsa.353150Cucurbita maxima (Rimu)cgycmaB0962
Cucsa.353150Cucurbita maxima (Rimu)cgycmaB0965
Cucsa.353150Cucurbita maxima (Rimu)cgycmaB0967