Cucsa.349790.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.349790.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Thylakoid membrane phosphoprotein 14 kDa
Location	scaffold03487 : 983284 .. 984935 (+)
Sequence length	1257

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTTTTCTCTGGAATAAGGAGAAAACTATAGAGAGAGAGAGAGAGAGAGAAAAGAGAAGATATTTATCCATAAGCTAAGCATTGAGTGTGTTATTACAAAACCCTTTTATCCAATCAAACACTATCCATTTCAATCCTCTCTCATTTCCTCAACTCTCATAGCATTATCCAAATTGATTGTGAAATGAGTGGCTCTCTATCTTCATAACTTTAACACAATTTATATAACCCAACACACCAAAAACCATCTCCAAAAAaGGGAAATAAACCAAAACACATAAACACCTGTCTACAAAACAAAaGGAAAAAAaCCCCAACACCAAAATCTTCACTTTCTTTCTTGCAGAAATTACCTTCTTCTTGTGTGTGAATATTTTGAGTGTGTGAGGCATTCATCAATGGCTTCTTCTTCTTCATCCACATTTGCTCTCTCTTCCTCCTCCACCCTCCTCGATTCTAAGGCCCCTCGACAATCCGCTTCCCCGTCATCCACCGTCCCGCTCCCCACTCTCCCCTCACCCCcTACTCCCTTGTCCCAGATCCGCCCTTGGAAGTCCACTGCCTATTGTGAGAATTCTATTATATATATATTAATATATCGTTTAAATTTAGCAGATCTTAAGTTAACTATATTGATTTTGTACGGATTATAGGTCGGAAGATTGCTCGCAATGTGATGGGGATGGCGACCGGAGAAGTCCCAGCTGAAGTGGCGGCCGGGGAGCTGGCGGAGATGCCTGAAATTGTCAAAAAAGTTCAAGAAGCTGTATGCCAAATTTGTTTTTTtGAAAGACGAAAAaGAAAAGTTAATTACATTATTATTAATGGGTTGGATTTTGTTTTGGTTCAGTGGGATAAGGTTGAAGATAAGTATGCTGTGAGCTCACTTGCTGTCTCCGGCTTTGTGGCCCTTTGGGCCTCCGCTGGCGTTGTCTCCGTAAGCATTTTGATTCTGTATGAGTTGTAAATAAGTATAGTTGATCAAGAGCATAAAATAAGGGTCTTATATTAAATTTTGCAAAATTTGTACATTAATCTATTTTTATATATATCTGCAGGCAATTGATAGGCTTCCTCTAGTTCCTGGCCTGCTTGAGCTTGTGGGAATTGGCTACACTGGGGTAAGTTTCTACATAATTTAATCCCAATTATATACTTCTAAATTTATAGCATACAATTTAGTTTAATGGCCATATTTGCATTTTGTGTATAATTATATGTGCAGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGTAATAAGTTCTAATAACACACCTTTTTTTTtTTTTttAATTAAACACCATGATTATATTATATTGAAGATGTTTATTTATTTATTATATTGTTGTTTGATTTTAAAAAAAAaTACATTTTGATAAATTTTTATAGGGAAGCATTATTGCAGAAACTAAAGGAAACTTACAGTGAGATAATAGGGAGCAGCTAAAGAAGAGTATTGATGTTGTTGTGTGTGTTCAGAGAGGGGATTTAATTATTGAATAATAAAAAAAaTATAATTAATTAATTGCTGTTTTTGCATTGCATTATTGCAACTATATTTGCATGAAAAAATTGTAACTCTTCTTTTTACCCACCCTTTTTTGTTCTCTTCATATATTATCTCTTATGTAATTGCCCTA

mRNA sequence

TATTTTTTCTCTGGAATAAGGAGAAAACTATagagagagagagagagagagaaaagagaAGATATTTATCCATAAGCTAAGCATTGAGTGTGTTATTACAAAACCCTTTTATCCAATCAAACACTATCCATTTCAATCCTCTCTCATTTCCTCAACTCTCATAGCATTATCCAAATTGATTGTGAAATGAGTGGCTCTCTATCTTCATAACTTTAACACAATTTATATAACCCAACACACCAAAAACCATCTCCAAAAAAGGGAAATAAACCAAAACACATAAACACCTGTCTACAAAACAAAAGGAAAAAAACCCCAACACCAAAATCTTCACTTTCTTTCTTGCAGAAATTACCTTCTTCTTGTGTGTGAATATTTTGAGTGTGTGAGGCATTCATCAATGGCTTCTTCTTCTTCATCCACATTTGCTCTCTCTTCCTCCTCCACCCTCCTCGATTCTAAGGCCCCTCGACAATCCGCTTCCCCGTCATCCACCGTCCCGCTCCCCACTCTCCCCTCACCCCCTACTCCCTTGTCCCAGATCCGCCCTTGGAAGTCCACTGCCTATTGTCGGAAGATTGCTCGCAATGTGATGGGGATGGCGACCGGAGAAGTCCCAGCTGAAGTGGCGGCCGGGGAGCTGGCGGAGATGCCTGAAATTGTCAAAAAAGTTCAAGAAGCTTGGGATAAGGTTGAAGATAAGTATGCTGTGAGCTCACTTGCTGTCTCCGGCTTTGTGGCCCTTTGGGCCTCCGCTGGCGTTGTCTCCGCAATTGATAGGCTTCCTCTAGTTCCTGGCCTGCTTGAGCTTGTGGGAATTGGCTACACTGGGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGTAATAAGTTCTAATAACACACCtttttttttttttttaattaaaCACCATGATTATATTATATTGAAGATGtttatttatttattatattgttgtttgattttaaaaaaaaatacattttgataaatttttataGGGAAGCATTATTGCAGAAACTAAAGGAAACTTACAGTGAGATAATAGGGAGCAGCTAAAGAAGAGTATTGATGTTGTTGTGTGTGTTCAGAGAGGGGatttaattattgaataataaaaaaaatataattaattaattGCTGTTTTTGCATTGCATTATTGCAACTATATTTGCATGAAAAAATTGTAACTCTTCTTTTTACCCACCCTTTTTTGTTCTCTTCATATATTATCTCTTATGTAATTGCCCTA

Coding sequence (CDS)

ATGGCTTCTTCTTCTTCATCCACATTTGCTCTCTCTTCCTCCTCCACCCTCCTCGATTCTAAGGCCCCTCGACAATCCGCTTCCCCGTCATCCACCGTCCCGCTCCCCACTCTCCCCTCACCCCcTACTCCCTTGTCCCAGATCCGCCCTTGGAAGTCCACTGCCTATTGTCGGAAGATTGCTCGCAATGTGATGGGGATGGCGACCGGAGAAGTCCCAGCTGAAGTGGCGGCCGGGGAGCTGGCGGAGATGCCTGAAATTGTCAAAAAAGTTCAAGAAGCTTGGGATAAGGTTGAAGATAAGTATGCTGTGAGCTCACTTGCTGTCTCCGGCTTTGTGGCCCTTTGGGCCTCCGCTGGCGTTGTCTCCGCAATTGATAGGCTTCCTCTAGTTCCTGGCCTGCTTGAGCTTGTGGGAATTGGCTACACTGGGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGTAA

Protein sequence

MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKIARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR*

Homology

[Close]

BLAST of Cucsa.349790.2 vs. Swiss-Prot
Match: CUT1B_ARATH (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana GN=CURT1B PE=1 SV=2)

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-45
Identity = 96/159 (60.38%), Postives = 116/159 (72.96%), Query Frame = 1


Query: 7   STFALSSSSTLLDSKAPRQ-----SASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKIA 66
           ++ ++SSSST++DS+AP       SAS  S + LPTLP      S  R  K+TAYCRKI 
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPIQ----SHTRAAKATAYCRKIV 61

Query: 67  RNVMGMAT---GEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWAS 126
           RNV+  AT   GE PA     E  E+PEIVK  QEAW+KV+DKYA+ SLA +G VALW S
Sbjct: 62  RNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGS 121

Query: 127 AGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR 158
           AG++SAIDRLPLVPG+LELVGIGYTGWF YKNL+F+PDR
Sbjct: 122 AGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDR 156

[Close]

BLAST of Cucsa.349790.2 vs. Swiss-Prot
Match: CUT1C_ARATH (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana GN=CURT1C PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-14
Identity = 36/84 (42.86%), Postives = 56/84 (66.67%), Query Frame = 1


Query: 77  AAGELAEMP---EIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPG 136
           A+GE ++     ++V  +Q  WDK ED+  +  L  +G VALWAS  +++AID+LP++  
Sbjct: 56  ASGESSDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISS 115

Query: 137 LLELVGIGYTGWFAYKNLIFRPDR 158
             ELVGI ++ WF Y+ L+F+PDR
Sbjct: 116 GFELVGILFSTWFTYRYLLFKPDR 139

[Close]

BLAST of Cucsa.349790.2 vs. Swiss-Prot
Match: CUT1A_ARATH (Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana GN=CURT1A PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12
Identity = 43/141 (30.50%), Postives = 75/141 (53.19%), Query Frame = 1


Query: 26  SASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKIARNVMGMATGE-------VPAEVAA 85
           +AS S  V +P +P+  T  S +      ++ R      + + +G        +    ++
Sbjct: 6   AASSSMAVMVPRVPAVSTRCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVELLKTRASS 65

Query: 86  GELAEMP--EIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLE 145
            E + +   E++  ++E WD +E+K  V        VA+W S+ VV AI+ +PL+P ++E
Sbjct: 66  EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVME 125

Query: 146 LVGIGYTGWFAYKNLIFRPDR 158
           LVG+GYTGWF Y+ L+F+  R
Sbjct: 126 LVGLGYTGWFVYRYLLFKSSR 146

[Close]

BLAST of Cucsa.349790.2 vs. Swiss-Prot
Match: CUT1D_ARATH (Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana GN=CURT1D PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.0e-06
Identity = 27/84 (32.14%), Postives = 48/84 (57.14%), Query Frame = 1


Query: 74  AEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPG 133
           A  A  E  +  E +  ++   DK    Y++        VAL+ ++ +VS+++ +PL P 
Sbjct: 93  APQAEDEETQALEFLNDIKLDSDKT---YSILLYGSGAIVALYLTSAIVSSLEAIPLFPK 152

Query: 134 LLELVGIGYTGWFAYKNLIFRPDR 158
           L+E+VG+GYT WF  + L+F+ +R
Sbjct: 153 LMEVVGLGYTLWFTTRYLLFKRNR 173

[Close]

BLAST of Cucsa.349790.2 vs. TrEMBL
Match: A0A0A0KCB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095900 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.6e-81
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60

Query: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR 158
           VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR
Sbjct: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR 157

[Close]

BLAST of Cucsa.349790.2 vs. TrEMBL
Match: A0A067K802_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14176 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.3e-56
Identity = 119/160 (74.38%), Postives = 135/160 (84.38%), Query Frame = 1


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPS-STVPLPTLPSPPTPLSQIRPWKSTAYCRK 60
           MAS+S++T ++SSSSTL+D+KAPRQS + S   V LPTLP PP   SQ RPWKS AYCRK
Sbjct: 1   MASTSTTTLSISSSSTLVDAKAPRQSPAASPQCVNLPTLPPPPVQ-SQSRPWKSAAYCRK 60

Query: 61  IARNVMGMAT--GEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWA 120
           IARNVM MAT  GE PAEVA    AE+PEIVK VQEAWDKVEDKYAVSSLAV+G VALW 
Sbjct: 61  IARNVMAMATASGEAPAEVAT---AELPEIVKTVQEAWDKVEDKYAVSSLAVAGAVALWG 120

Query: 121 SAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR 158
           S G++SAIDRLPL+PGLLE+VGIGY+GWFAYKNLIF+PDR
Sbjct: 121 STGMISAIDRLPLIPGLLEVVGIGYSGWFAYKNLIFKPDR 156

[Close]

BLAST of Cucsa.349790.2 vs. TrEMBL
Match: A0A061DU21_THECC (Photosystem I P subunit isoform 1 OS=Theobroma cacao GN=TCM_005027 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.0e-56
Identity = 116/158 (73.42%), Postives = 131/158 (82.91%), Query Frame = 1


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPS-STVPLPTLPSPPTPLSQIRPWKSTAYCRK 60
           MAS+SSS  ++SSSST +D+KAPRQ+ + S   V LPTLP PP   SQ RPWK+TAYCRK
Sbjct: 1   MASASSSALSISSSSTRVDAKAPRQTTAASPQCVTLPTLPPPPVQ-SQSRPWKTTAYCRK 60

Query: 61  IARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120
           IARNVM MATGE PAEVA    AEMPEIVK +++ WDKVEDKYAVSSLAV+G VALW S 
Sbjct: 61  IARNVMAMATGEAPAEVAT---AEMPEIVKTIRDTWDKVEDKYAVSSLAVAGIVALWGSI 120

Query: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR 158
           G++SAIDRLPLVPGLLELVGIGY+GWFAYKNL F PDR
Sbjct: 121 GLISAIDRLPLVPGLLELVGIGYSGWFAYKNLFFEPDR 154

[Close]

BLAST of Cucsa.349790.2 vs. TrEMBL
Match: A0A061DT55_THECC (Photosystem I P subunit isoform 2 OS=Theobroma cacao GN=TCM_005027 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.0e-56
Identity = 116/158 (73.42%), Postives = 131/158 (82.91%), Query Frame = 1


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPS-STVPLPTLPSPPTPLSQIRPWKSTAYCRK 60
           MAS+SSS  ++SSSST +D+KAPRQ+ + S   V LPTLP PP   SQ RPWK+TAYCRK
Sbjct: 1   MASASSSALSISSSSTRVDAKAPRQTTAASPQCVTLPTLPPPPVQ-SQSRPWKTTAYCRK 60

Query: 61  IARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120
           IARNVM MATGE PAEVA    AEMPEIVK +++ WDKVEDKYAVSSLAV+G VALW S 
Sbjct: 61  IARNVMAMATGEAPAEVAT---AEMPEIVKTIRDTWDKVEDKYAVSSLAVAGIVALWGSI 120

Query: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR 158
           G++SAIDRLPLVPGLLELVGIGY+GWFAYKNL F PDR
Sbjct: 121 GLISAIDRLPLVPGLLELVGIGYSGWFAYKNLFFEPDR 154

[Close]

BLAST of Cucsa.349790.2 vs. TrEMBL
Match: A0A067H6S1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030898mg PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 6.7e-56
Identity = 116/155 (74.84%), Postives = 133/155 (85.81%), Query Frame = 1


Query: 5   SSSTFALSSSSTLLDSKAPRQSASPSST--VPLPTLPSPPTPLSQIRPWKSTAYCRKIAR 64
           +SS  ++SSSSTL+D+KAPRQSA P+ST  V LPTLP PP P SQ RPWK+T YCRK+AR
Sbjct: 2   ASSALSISSSSTLVDAKAPRQSA-PASTQCVSLPTLPPPPVP-SQTRPWKATTYCRKMAR 61

Query: 65  NVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVV 124
           NVM MATGE PAEVAA EL   PEIVK VQEAWDKVEDKYAV+SLAV+  +A+W S G++
Sbjct: 62  NVMAMATGEAPAEVAATEL---PEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMI 121

Query: 125 SAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR 158
           SAIDRLPLVPG+LELVGIGYTGWFAYKNL+F+PDR
Sbjct: 122 SAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDR 151

[Close]

BLAST of Cucsa.349790.2 vs. TAIR10
Match: AT2G46820.1 (AT2G46820.1 photosystem I P subunit)

HSP 1 Score: 184.1 bits (466), Expect = 6.6e-47
Identity = 96/159 (60.38%), Postives = 116/159 (72.96%), Query Frame = 1


Query: 7   STFALSSSSTLLDSKAPRQ-----SASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKIA 66
           ++ ++SSSST++DS+AP       SAS  S + LPTLP      S  R  K+TAYCRKI 
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPIQ----SHTRAAKATAYCRKIV 61

Query: 67  RNVMGMAT---GEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWAS 126
           RNV+  AT   GE PA     E  E+PEIVK  QEAW+KV+DKYA+ SLA +G VALW S
Sbjct: 62  RNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGS 121

Query: 127 AGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR 158
           AG++SAIDRLPLVPG+LELVGIGYTGWF YKNL+F+PDR
Sbjct: 122 AGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDR 156

[Close]

BLAST of Cucsa.349790.2 vs. TAIR10
Match: AT1G52220.1 (AT1G52220.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-15
Identity = 36/84 (42.86%), Postives = 56/84 (66.67%), Query Frame = 1


Query: 77  AAGELAEMP---EIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPG 136
           A+GE ++     ++V  +Q  WDK ED+  +  L  +G VALWAS  +++AID+LP++  
Sbjct: 56  ASGESSDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISS 115

Query: 137 LLELVGIGYTGWFAYKNLIFRPDR 158
             ELVGI ++ WF Y+ L+F+PDR
Sbjct: 116 GFELVGILFSTWFTYRYLLFKPDR 139

[Close]

BLAST of Cucsa.349790.2 vs. TAIR10
Match: AT4G01150.1 (AT4G01150.1 unknown protein)

HSP 1 Score: 74.7 bits (182), Expect = 5.7e-14
Identity = 43/141 (30.50%), Postives = 75/141 (53.19%), Query Frame = 1


Query: 26  SASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKIARNVMGMATGE-------VPAEVAA 85
           +AS S  V +P +P+  T  S +      ++ R      + + +G        +    ++
Sbjct: 6   AASSSMAVMVPRVPAVSTRCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVELLKTRASS 65

Query: 86  GELAEMP--EIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLE 145
            E + +   E++  ++E WD +E+K  V        VA+W S+ VV AI+ +PL+P ++E
Sbjct: 66  EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVME 125

Query: 146 LVGIGYTGWFAYKNLIFRPDR 158
           LVG+GYTGWF Y+ L+F+  R
Sbjct: 126 LVGLGYTGWFVYRYLLFKSSR 146

[Close]

BLAST of Cucsa.349790.2 vs. TAIR10
Match: AT4G38100.1 (AT4G38100.1 unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 3.9e-07
Identity = 27/84 (32.14%), Postives = 48/84 (57.14%), Query Frame = 1


Query: 74  AEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPG 133
           A  A  E  +  E +  ++   DK    Y++        VAL+ ++ +VS+++ +PL P 
Sbjct: 93  APQAEDEETQALEFLNDIKLDSDKT---YSILLYGSGAIVALYLTSAIVSSLEAIPLFPK 152

Query: 134 LLELVGIGYTGWFAYKNLIFRPDR 158
           L+E+VG+GYT WF  + L+F+ +R
Sbjct: 153 LMEVVGLGYTLWFTTRYLLFKRNR 173

[Close]

BLAST of Cucsa.349790.2 vs. NCBI nr
Match: gi|449445535|ref|XP_004140528.1| (PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis sativus])

HSP 1 Score: 310.1 bits (793), Expect = 2.3e-81
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60

Query: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR 158
           VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR
Sbjct: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR 157

[Close]

BLAST of Cucsa.349790.2 vs. NCBI nr
Match: gi|659119745|ref|XP_008459821.1| (PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis melo])

HSP 1 Score: 297.7 bits (761), Expect = 1.2e-77
Identity = 152/158 (96.20%), Postives = 154/158 (97.47%), Query Frame = 1


Query: 1   MASSSSSTFALSSS-STLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRK 60
           MASSSSSTFALSSS STLLDSKAPRQS SPSSTVPLPTLPSPPTP +QIRPWKSTAYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPTLPSPPTPSAQIRPWKSTAYCRK 60

Query: 61  IARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120
           IARNVM MATGEVPAEVAAGELAEMPEI+KKVQEAWDKVEDKYAVSSLAVSGFVALWASA
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120

Query: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR 158
           GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR
Sbjct: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR 158

[Close]

BLAST of Cucsa.349790.2 vs. NCBI nr
Match: gi|1009142796|ref|XP_015888916.1| (PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 228.8 bits (582), Expect = 6.7e-57
Identity = 115/158 (72.78%), Postives = 133/158 (84.18%), Query Frame = 1


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPS-STVPLPTLPSPPTPLSQIRPWKSTAYCRK 60
           MAS+SSS   +SSSSTL+D+KAPRQSA+ S   V LPTLP PP   SQ RPWKSTAYCRK
Sbjct: 1   MASTSSSALTISSSSTLVDTKAPRQSAASSPQCVTLPTLPPPPVQ-SQKRPWKSTAYCRK 60

Query: 61  IARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120
           +ARNVM MATGE PAEVAA EL   PE +K +QEAWDKVEDKYAVSSL V+  VALW S+
Sbjct: 61  VARNVMAMATGEAPAEVAATEL---PEFIKSIQEAWDKVEDKYAVSSLGVAAIVALWGSS 120

Query: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR 158
           G++SAIDRLPL+PG+LE+VGIGY+GWFAYKNL+F+PDR
Sbjct: 121 GLISAIDRLPLIPGVLEVVGIGYSGWFAYKNLVFKPDR 154

[Close]

BLAST of Cucsa.349790.2 vs. NCBI nr
Match: gi|802694139|ref|XP_012083090.1| (PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas])

HSP 1 Score: 226.5 bits (576), Expect = 3.3e-56
Identity = 119/160 (74.38%), Postives = 135/160 (84.38%), Query Frame = 1


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPS-STVPLPTLPSPPTPLSQIRPWKSTAYCRK 60
           MAS+S++T ++SSSSTL+D+KAPRQS + S   V LPTLP PP   SQ RPWKS AYCRK
Sbjct: 1   MASTSTTTLSISSSSTLVDAKAPRQSPAASPQCVNLPTLPPPPVQ-SQSRPWKSAAYCRK 60

Query: 61  IARNVMGMAT--GEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWA 120
           IARNVM MAT  GE PAEVA    AE+PEIVK VQEAWDKVEDKYAVSSLAV+G VALW 
Sbjct: 61  IARNVMAMATASGEAPAEVAT---AELPEIVKTVQEAWDKVEDKYAVSSLAVAGAVALWG 120

Query: 121 SAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR 158
           S G++SAIDRLPL+PGLLE+VGIGY+GWFAYKNLIF+PDR
Sbjct: 121 STGMISAIDRLPLIPGLLEVVGIGYSGWFAYKNLIFKPDR 156

[Close]

BLAST of Cucsa.349790.2 vs. NCBI nr
Match: gi|590720744|ref|XP_007051414.1| (Photosystem I P subunit isoform 1 [Theobroma cacao])

HSP 1 Score: 226.1 bits (575), Expect = 4.3e-56
Identity = 116/158 (73.42%), Postives = 131/158 (82.91%), Query Frame = 1


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPS-STVPLPTLPSPPTPLSQIRPWKSTAYCRK 60
           MAS+SSS  ++SSSST +D+KAPRQ+ + S   V LPTLP PP   SQ RPWK+TAYCRK
Sbjct: 1   MASASSSALSISSSSTRVDAKAPRQTTAASPQCVTLPTLPPPPVQ-SQSRPWKTTAYCRK 60

Query: 61  IARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120
           IARNVM MATGE PAEVA    AEMPEIVK +++ WDKVEDKYAVSSLAV+G VALW S 
Sbjct: 61  IARNVMAMATGEAPAEVAT---AEMPEIVKTIRDTWDKVEDKYAVSSLAVAGIVALWGSI 120

Query: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDR 158
           G++SAIDRLPLVPGLLELVGIGY+GWFAYKNL F PDR
Sbjct: 121 GLISAIDRLPLVPGLLELVGIGYSGWFAYKNLFFEPDR 154

The following BLAST results are available for this feature:

BLAST of Cucsa.349790.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CUT1B_ARATH	1.2e-45	60.38	Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana GN=CURT1B ...	[more]
CUT1C_ARATH	2.4e-14	42.86	Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana GN=CURT1C ...	[more]
CUT1A_ARATH	1.0e-12	30.50	Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana GN=CURT1A ...	[more]
CUT1D_ARATH	7.0e-06	32.14	Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana GN=CURT1D ...	[more]

BLAST of Cucsa.349790.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCB7_CUCSA	1.6e-81	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095900 PE=4 SV=1	[more]
A0A067K802_JATCU	2.3e-56	74.38	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14176 PE=4 SV=1	[more]
A0A061DU21_THECC	3.0e-56	73.42	Photosystem I P subunit isoform 1 OS=Theobroma cacao GN=TCM_005027 PE=4 SV=1	[more]
A0A061DT55_THECC	3.0e-56	73.42	Photosystem I P subunit isoform 2 OS=Theobroma cacao GN=TCM_005027 PE=4 SV=1	[more]
A0A067H6S1_CITSI	6.7e-56	74.84	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030898mg PE=4 SV=1	[more]

BLAST of Cucsa.349790.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46820.1	6.6e-47	60.38	photosystem I P subunit	[more]
AT1G52220.1	1.3e-15	42.86	FUNCTIONS IN: molecular_function unknown	[more]
AT4G01150.1	5.7e-14	30.50	unknown protein	[more]
AT4G38100.1	3.9e-07	32.14	unknown protein	[more]

BLAST of Cucsa.349790.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445535\|ref\|XP_004140528.1\|	2.3e-81	100.00	PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis sativus]	[more]
gi\|659119745\|ref\|XP_008459821.1\|	1.2e-77	96.20	PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis melo]	[more]
gi\|1009142796\|ref\|XP_015888916.1\|	6.7e-57	72.78	PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Ziziphus jujuba]	[more]
gi\|802694139\|ref\|XP_012083090.1\|	3.3e-56	74.38	PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]	[more]
gi\|590720744\|ref\|XP_007051414.1\|	4.3e-56	73.42	Photosystem I P subunit isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR025564	CAAD_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0009579	thylakoid

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009657	plastid organization
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0044710	single-organism metabolic process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0006364	rRNA processing
biological_process	GO:0044085	cellular component biogenesis
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0044260	cellular macromolecule metabolic process
cellular_component	GO:0009295	nucleoid
cellular_component	GO:0009508	plastid chromosome
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0030093	chloroplast photosystem I
cellular_component	GO:0009941	chloroplast envelope
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.349790	Cucsa.349790	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.349790.2	Cucsa.349790.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.349790.2.five_prime_UTR.1	Cucsa.349790.2.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.349790.2.CDS.1	Cucsa.349790.2.CDS.1	CDS
Cucsa.349790.2.CDS.2	Cucsa.349790.2.CDS.2	CDS
Cucsa.349790.2.CDS.3	Cucsa.349790.2.CDS.3	CDS
Cucsa.349790.2.CDS.4	Cucsa.349790.2.CDS.4	CDS
Cucsa.349790.2.CDS.5	Cucsa.349790.2.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.349790.2.three_prime_UTR.1	Cucsa.349790.2.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025564	Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain	PFAM	PF14159	CAAD	coord: 89..157 score: 1.6
None	No IPR available	PANTHER	PTHR33222:SF9	PROTEIN CURVATURE THYLAKOID 1B, CHLOROPLASTIC	coord: 1..157 score: 6.6