Cucsa.343280.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGCCACACATTGCTCATCCATTCACTCCCAATCCCAAAACCACACAAAAATATCAAATCAATCTCTTTCCCTTTTCCTTATATACCACTTTCTCCTCTCTTCTCCTCTTTGATTATTACCCACAAATATCCCCAATTTTCTTACAACCATGGCCGCTGTCACCTCCGCCGCCGTCGCTATCCCTTCCTTCACCGGCCTCAAGTCCACATCCTCCTCCAAACCCACCTCACTCATCCGCCTCCCTTCCCCTGCATCCCCAAAGCTATGCATCAAAGCCTCTCTTAAGGACGTCGGTGTAGCCGTTGCTGCCACCGCCGCCAGCGCTCTTTTGGCCTCAAACGCCATGGCCATCGAGATCTTGCTGGGTGGGGACGACGGTTCTCTGGCATTCGTTCCGAACAATTTCACGGTGGCGTCGGGGGAGAAAATCACGTTCAAGAACAACGCGGGATTCCCACACAACGTAGTGTTCGATGAGGATGAAATTCCGAGCGGAGTTGATGTGGGAAAGATCTCGATGGATGAGGAGAATCTTTTGAACGCTCCCGGAGAGGTTTATGAAGTTCAGCTTACTGAAAAAGGAAGTTACTCGTTCTACTGTTCGCCTCATCAAGGCGCTGGAATGGTTGGAAAAGTTACGGTTAATTGATGATCCCATCCATTCCATTTTTCTATGTAATGTTCTTTCTTTTTTTATTTAATGTATAATAATTTTAAAGTTGAATGTCTTTGGTTTTCCTCTTCCACTCAGAGACTGTATGGCCGTAGAGCTCATAAATGGAGATTTAATAATTCACTAATGATGTAAATGGTATTTGTTGTCGTTGTTCTCTATGCCTTTTCCTCGTCGGCTTCCTTTCTGAC AGCCACACATTGCTCATCCATTCACTCCCAATCCCAAAACCACACAAAAATATCAAATCAATCTCTTTCCCTTTTCCTTATATACCACTTTCTCCTCTCTTCTCCTCTTTGATTATTACCCACAAATATCCCCAATTTTCTTACAACCATGGCCGCTGTCACCTCCGCCGCCGTCGCTATCCCTTCCTTCACCGGCCTCAAGTCCACATCCTCCTCCAAACCCACCTCACTCATCCGCCTCCCTTCCCCTGCATCCCCAAAGCTATGCATCAAAGCCTCTCTTAAGGACGTCGGTGTAGCCGTTGCTGCCACCGCCGCCAGCGCTCTTTTGGCCTCAAACGCCATGGCCATCGAGATCTTGCTGGGTGGGGACGACGGTTCTCTGGCATTCGTTCCGAACAATTTCACGGTGGCGTCGGGGGAGAAAATCACGTTCAAGAACAACGCGGGATTCCCACACAACGTAGTGTTCGATGAGGATGAAATTCCGAGCGGAGTTGATGTGGGAAAGATCTCGATGGATGAGGAGAATCTTTTGAACGCTCCCGGAGAGGTTTATGAAGTTCAGCTTACTGAAAAAGGAAGTTACTCGTTCTACTGTTCGCCTCATCAAGGCGCTGGAATGGTTGGAAAAGTTACGGTTAATTGATGATCCCATCCATTCCATTTTTCTATGTAATGTTCTTTCtttttttatttaatgtataataattttaaaGTTGAATGTCTTTGGTTTTCCTCTTCCACTCAGAGACTGTATGGCCGTAGAGCTCATAAATGGAGATTTAATAATTCACTAATGATGTAAATGGTATTTGTTGTCGTTGTTCTCTATGCCTTTTCCTCGTCGGCTTCCTTTCTGAC ATGGCCGCTGTCACCTCCGCCGCCGTCGCTATCCCTTCCTTCACCGGCCTCAAGTCCACATCCTCCTCCAAACCCACCTCACTCATCCGCCTCCCTTCCCCTGCATCCCCAAAGCTATGCATCAAAGCCTCTCTTAAGGACGTCGGTGTAGCCGTTGCTGCCACCGCCGCCAGCGCTCTTTTGGCCTCAAACGCCATGGCCATCGAGATCTTGCTGGGTGGGGACGACGGTTCTCTGGCATTCGTTCCGAACAATTTCACGGTGGCGTCGGGGGAGAAAATCACGTTCAAGAACAACGCGGGATTCCCACACAACGTAGTGTTCGATGAGGATGAAATTCCGAGCGGAGTTGATGTGGGAAAGATCTCGATGGATGAGGAGAATCTTTTGAACGCTCCCGGAGAGGTTTATGAAGTTCAGCTTACTGAAAAAGGAAGTTACTCGTTCTACTGTTCGCCTCATCAAGGCGCTGGAATGGTTGGAAAAGTTACGGTTAATTGA MAAVTSAAVAIPSFTGLKSTSSSKPTSLIRLPSPASPKLCIKASLKDVGVAVAATAASALLASNAMAIEILLGGDDGSLAFVPNNFTVASGEKITFKNNAGFPHNVVFDEDEIPSGVDVGKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN*
BLAST of Cucsa.343280.1 vs. Swiss-Prot
Match: PLAS_SPIOL (Plastocyanin, chloroplastic OS=Spinacia oleracea GN=PETE PE=1 SV=2) HSP 1 Score: 244.2 bits (622), Expect = 1.0e-63 Identity = 124/168 (73.81%), Postives = 144/168 (85.71%), Query Frame = 1
BLAST of Cucsa.343280.1 vs. Swiss-Prot
Match: PLAS_SOLLC (Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1) HSP 1 Score: 242.3 bits (617), Expect = 3.8e-63 Identity = 124/170 (72.94%), Postives = 145/170 (85.29%), Query Frame = 1
BLAST of Cucsa.343280.1 vs. Swiss-Prot
Match: PLAS2_ARATH (Plastocyanin major isoform, chloroplastic OS=Arabidopsis thaliana GN=DRT112 PE=1 SV=2) HSP 1 Score: 242.3 bits (617), Expect = 3.8e-63 Identity = 123/167 (73.65%), Postives = 139/167 (83.23%), Query Frame = 1
BLAST of Cucsa.343280.1 vs. Swiss-Prot
Match: PLAS1_POPNI (Plastocyanin A, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2) HSP 1 Score: 238.8 bits (608), Expect = 4.3e-62 Identity = 119/168 (70.83%), Postives = 141/168 (83.93%), Query Frame = 1
BLAST of Cucsa.343280.1 vs. Swiss-Prot
Match: PLAS2_POPNI (Plastocyanin B, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2) HSP 1 Score: 236.9 bits (603), Expect = 1.6e-61 Identity = 118/168 (70.24%), Postives = 143/168 (85.12%), Query Frame = 1
BLAST of Cucsa.343280.1 vs. TrEMBL
Match: A0A0A0LE99_CUCSA (Plastocyanin OS=Cucumis sativus GN=Csa_3G875430 PE=3 SV=1) HSP 1 Score: 324.3 bits (830), Expect = 8.6e-86 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1
BLAST of Cucsa.343280.1 vs. TrEMBL
Match: A0A0B2RGW1_GLYSO (Plastocyanin OS=Glycine soja GN=glysoja_013832 PE=3 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 4.4e-66 Identity = 131/166 (78.92%), Postives = 148/166 (89.16%), Query Frame = 1
BLAST of Cucsa.343280.1 vs. TrEMBL
Match: I1JSY7_SOYBN (Plastocyanin OS=Glycine max GN=GLYMA_04G020300 PE=3 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 4.4e-66 Identity = 131/166 (78.92%), Postives = 148/166 (89.16%), Query Frame = 1
BLAST of Cucsa.343280.1 vs. TrEMBL
Match: C6SZV4_SOYBN (Plastocyanin OS=Glycine max PE=2 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 3.7e-65 Identity = 130/166 (78.31%), Postives = 147/166 (88.55%), Query Frame = 1
BLAST of Cucsa.343280.1 vs. TrEMBL
Match: M5XH36_PRUPE (Plastocyanin OS=Prunus persica GN=PRUPE_ppa012521mg PE=3 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 6.4e-65 Identity = 129/167 (77.25%), Postives = 146/167 (87.43%), Query Frame = 1
BLAST of Cucsa.343280.1 vs. TAIR10
Match: AT1G20340.1 (AT1G20340.1 Cupredoxin superfamily protein) HSP 1 Score: 242.3 bits (617), Expect = 2.2e-64 Identity = 123/167 (73.65%), Postives = 139/167 (83.23%), Query Frame = 1
BLAST of Cucsa.343280.1 vs. TAIR10
Match: AT1G76100.1 (AT1G76100.1 plastocyanin 1) HSP 1 Score: 235.0 bits (598), Expect = 3.5e-62 Identity = 121/170 (71.18%), Postives = 132/170 (77.65%), Query Frame = 1
BLAST of Cucsa.343280.1 vs. NCBI nr
Match: gi|449437172|ref|XP_004136366.1| (PREDICTED: plastocyanin [Cucumis sativus]) HSP 1 Score: 324.3 bits (830), Expect = 1.2e-85 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1
BLAST of Cucsa.343280.1 vs. NCBI nr
Match: gi|659132911|ref|XP_008466451.1| (PREDICTED: plastocyanin [Cucumis melo]) HSP 1 Score: 309.7 bits (792), Expect = 3.1e-81 Identity = 158/166 (95.18%), Postives = 161/166 (96.99%), Query Frame = 1
BLAST of Cucsa.343280.1 vs. NCBI nr
Match: gi|734406057|gb|KHN33826.1| (Plastocyanin, chloroplastic [Glycine soja]) HSP 1 Score: 258.8 bits (660), Expect = 6.3e-66 Identity = 131/166 (78.92%), Postives = 148/166 (89.16%), Query Frame = 1
BLAST of Cucsa.343280.1 vs. NCBI nr
Match: gi|351727559|ref|NP_001236653.1| (uncharacterized protein LOC100306554 [Glycine max]) HSP 1 Score: 255.8 bits (652), Expect = 5.4e-65 Identity = 130/166 (78.31%), Postives = 147/166 (88.55%), Query Frame = 1
BLAST of Cucsa.343280.1 vs. NCBI nr
Match: gi|596197493|ref|XP_007223602.1| (hypothetical protein PRUPE_ppa012521mg [Prunus persica]) HSP 1 Score: 255.0 bits (650), Expect = 9.2e-65 Identity = 129/167 (77.25%), Postives = 146/167 (87.43%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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