Cucsa.340790.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.340790.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	MYB transcription factor
Location	scaffold03356 : 3179106 .. 3180276 (+)
Sequence length	999

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAAACCATAATCTCTCTCTCTATCTCTATCTCTTTAAAGTTCCACTTCCAATGACTGAAGAAGAAGAAGAGTCTCTGAAAAGAAAAGTGAAACAAGTTGTTGAAGGAGACATAAATGAGGCTGAAATTTTGAGAAATGGAGGAGTCAATAAAGGCGCTTGGACTGCAGAAGAAGATCAAAAATTGGCTCAAGTTATTGCCATTCATGGTGCAAAAAGGTGGAAGTCCATTGCAGCTAAAGCAGGTCCATCCCTTTCAACTTTCAACTTCTCCTTTTtCTTTCCAACTTCCCACGCACATATATTCAATGGGTTTCTAAATTTTCCAGGCCTCAATCGTTGTGGGAAGAGTTGCAGACTAAGATGGCTCAATTATCTCAGACCTAACATTAAGAGAGGAAATATATCAGATCAAGAAGAAGATTTGATCCTCAGGCTTCATAAACTTCTTGGCAACAGGTCAAATTTTCTATCCCCTTTCATTCTATATTTCTCAACTTTTCTTGCTTTCATTAACTTAATAAAAGTTTTGGTTTTCGGAGTTTAGGTGGTCTTTGATTGCTGGGAGACTGCCAGGGCGAACAGATAACGAGATCAAGAACTACTGGAATTCTCATTTGAGCAAAAAAATGAACCAACAGAGTGAAAAaGAAAGAAGGAAAGGGTGTAAAAGAAAAGTGAACACAGAGTCTAGAGAAGAGGAAACGTCTCAAGAACGTGAAAACAGCTCAAACTTGGAGTATGATGTCGATAACTTGTTTGATTTTTCCAATGAGGGACCTGATTTGGAGTGGATGAGTAATTTCCTGTAATTGGGTATCATAAGCAGCAACTATAAAGCTTAGGTTGTTAGTGCACTCTCATGCAAATCATTACTAATTTATCTAAAAATTTAATCGTTTCACTCATAGCCTTTACCAAAATATTTGGTTGCTGATGTACAGATTCCTACTAACTTCATCTTCTGCAATCATCAACTATCAAAATCATATTCCAAAGATCATAATTCTATACACATCTATAGGGAGTCTGCAAGAAACATCTAGGGCCAATATGGTAATCTCCTAAATATAAAGAGAGAGACACAGAGAGATCTTGTGCTACATATAGTAATCCTCCAAGTTTAGAGAGAGAGAGGGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGG

mRNA sequence

AAATAAACCATAATCTCTCTCTCTATCTCTATCTCTTTAAAGTTCCACTTCCAATGACTGAAGAAGAAGAAGAGTCTCTGAAAAGAAAAGTGAAACAAGTTGTTGAAGGAGACATAAATGAGGCTGAAATTTTGAGAAATGGAGGAGTCAATAAAGGCGCTTGGACTGCAGAAGAAGATCAAAAATTGGCTCAAGTTATTGCCATTCATGGTGCAAAAAGGTGGAAGTCCATTGCAGCTAAAGCAGGCCTCAATCGTTGTGGGAAGAGTTGCAGACTAAGATGGCTCAATTATCTCAGACCTAACATTAAGAGAGGAAATATATCAGATCAAGAAGAAGATTTGATCCTCAGGCTTCATAAACTTCTTGGCAACAGGTGGTCTTTGATTGCTGGGAGACTGCCAGGGCGAACAGATAACGAGATCAAGAACTACTGGAATTCTCATTTGAGCAAAAAAATGAACCAACAGAGTGAAAAAGAAAGAAGGAAAGGGTGTAAAAGAAAAGTGAACACAGAGTCTAGAGAAGAGGAAACGTCTCAAGAACGTGAAAACAGCTCAAACTTGGAGTATGATGTCGATAACTTGTTTGATTTTTCCAATGAGGGACCTGATTTGGAGTGGATGAGTAATTTCCTGTAATTGGGTATCATAAGCAGCAACTATAAAGCTTAGGTTGTTAGTGCACTCTCATGCAAATCATTACTAATTTATCTAAAAATTTAATCGTTTCACTCATAGCCTTTACCAAAATATTTGGTTGCTGATGTACAGATTCCTACTAACTTCATCTTCTGCAATCATCAACTATCAAAATCATATTCCAAAGATCATAATTCTATACACATCTATAGGGAGTCTGCAAGAAACATCTAGGGCCAATATGGTAATCTCCTAAATATAAAGAGAGAGACACAGAGAGATCTTGTGCTACATATAGTAATCCTCCAAGTTTagagagagagagggagagagagggagagagagagagagagagagG

Coding sequence (CDS)

ATGACTGAAGAAGAAGAAGAGTCTCTGAAAAGAAAAGTGAAACAAGTTGTTGAAGGAGACATAAATGAGGCTGAAATTTTGAGAAATGGAGGAGTCAATAAAGGCGCTTGGACTGCAGAAGAAGATCAAAAATTGGCTCAAGTTATTGCCATTCATGGTGCAAAAAGGTGGAAGTCCATTGCAGCTAAAGCAGGCCTCAATCGTTGTGGGAAGAGTTGCAGACTAAGATGGCTCAATTATCTCAGACCTAACATTAAGAGAGGAAATATATCAGATCAAGAAGAAGATTTGATCCTCAGGCTTCATAAACTTCTTGGCAACAGGTGGTCTTTGATTGCTGGGAGACTGCCAGGGCGAACAGATAACGAGATCAAGAACTACTGGAATTCTCATTTGAGCAAAAAAATGAACCAACAGAGTGAAAAaGAAAGAAGGAAAGGGTGTAAAAGAAAAGTGAACACAGAGTCTAGAGAAGAGGAAACGTCTCAAGAACGTGAAAACAGCTCAAACTTGGAGTATGATGTCGATAACTTGTTTGATTTTTCCAATGAGGGACCTGATTTGGAGTGGATGAGTAATTTCCTGTAA

Protein sequence

MTEEEEESLKRKVKQVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRKGCKRKVNTESREEETSQERENSSNLEYDVDNLFDFSNEGPDLEWMSNFL*

Homology

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BLAST of Cucsa.340790.2 vs. Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.0e-44
Identity = 88/162 (54.32%), Postives = 110/162 (67.90%), Query Frame = 1


Query: 33  NKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYLRPNIKRGNISD 92
           NKGAWT EED KL   I  HG   W+S+   AGL RCGKSCRLRW+NYLRP++KRGN + 
Sbjct: 13  NKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRGNFTL 72

Query: 93  QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRKGCKRKV 152
           +E+DLI++LH LLGN+WSLIA RLPGRTDNEIKNYWN+H+ +K+        RKG     
Sbjct: 73  EEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKL-------LRKGIDPAT 132

Query: 153 NTESREEETSQERENSSNLEYDVDNLFDFSNEGPDLEWMSNF 195
           +    E +TSQ+  +SS  E   D L    + GP LE ++NF
Sbjct: 133 HRPINETKTSQDSSDSSKTE---DPLVKILSFGPQLEKIANF 164

[Close]

BLAST of Cucsa.340790.2 vs. Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 7.5e-42
Identity = 76/105 (72.38%), Postives = 88/105 (83.81%), Query Frame = 1


Query: 31  GVNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYLRPNIKRGNI 90
           GV +GAWT++ED  LA  +  HG  +W+ +  KAGL RCGKSCRLRWLNYLRPNI+RGNI
Sbjct: 11  GVKRGAWTSKEDDALAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYLRPNIRRGNI 70

Query: 91  SDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKK 136
           S  EEDLI+RLH+LLGNRWSLIAGRLPGRTDNEIKNYWNS L ++
Sbjct: 71  SYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSTLGRR 115

[Close]

BLAST of Cucsa.340790.2 vs. Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-41
Identity = 84/167 (50.30%), Postives = 105/167 (62.87%), Query Frame = 1


Query: 29  NGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYLRPNIKRG 88
           N    KG WT EED+ L   +  HG   W  IA K GL RCGKSCRLRW+NYL PN+KRG
Sbjct: 13  NNEYKKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKRG 72

Query: 89  NISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRKGC 148
           N ++QEEDLI+RLHKLLGNRWSLIA R+PGRTDN++KNYWN+HLSKK+  + +K ++   
Sbjct: 73  NFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGIKDQKTKQSNG 132

Query: 149 KRKVNTESREEETSQERENSSNLEYDVDNLFDFSNEGPDLEWMSNFL 196
                        + E    SN+   VDN     +E  +    SN+L
Sbjct: 133 DIVYQINLPNPTETSEETKISNI---VDNNNILGDEIQEDHQGSNYL 176

[Close]

BLAST of Cucsa.340790.2 vs. Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.3e-41
Identity = 79/132 (59.85%), Postives = 95/132 (71.97%), Query Frame = 1


Query: 31  GVNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYLRPNIKRGNI 90
           G+ +G WT EED+ L   I   G  RW+S+  +AGL RCGKSCRLRW+NYLRP++KRG I
Sbjct: 22  GMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGI 81

Query: 91  SDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRKGCKR 150
           +  EEDLILRLH+LLGNRWSLIAGR+PGRTDNEIKNYWN+HL KK+ +Q    +      
Sbjct: 82  TSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLD 141

Query: 151 KVNTESREEETS 163
             N    EEE S
Sbjct: 142 ANNIHKPEEEVS 153

[Close]

BLAST of Cucsa.340790.2 vs. Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.1e-40
Identity = 72/103 (69.90%), Postives = 83/103 (80.58%), Query Frame = 1


Query: 34  KGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYLRPNIKRGNISDQ 93
           KG WT EED+ L   +  HG   W  IA K GL RCGKSCRLRW+NYL PN+ RGN +DQ
Sbjct: 14  KGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRGNFTDQ 73

Query: 94  EEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKM 137
           EEDLI+RLHKLLGNRWSLIA R+PGRTDN++KNYWN+HLSKK+
Sbjct: 74  EEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 116

[Close]

BLAST of Cucsa.340790.2 vs. TrEMBL
Match: A0A061GJK0_THECC (Myb domain protein 23 OS=Theobroma cacao GN=TCM_029126 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.5e-65
Identity = 129/172 (75.00%), Postives = 143/172 (83.14%), Query Frame = 1


Query: 32  VNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYLRPNIKRGNIS 91
           VNKGAWTAEED+KLA+VIA+HGAKRWK IA KAGLNRCGKSCRLRW+NYLRPNIKRGNIS
Sbjct: 21  VNKGAWTAEEDRKLAEVIAVHGAKRWKIIAIKAGLNRCGKSCRLRWMNYLRPNIKRGNIS 80

Query: 92  DQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQ---QSEKERRKGC 151
           DQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKK+NQ   QS    R+GC
Sbjct: 81  DQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKINQKEKQSGATTREGC 140

Query: 152 K--RKVNTESRE--EETSQERENSSNLEYDVDNLFDFSNEGP-DLEWMSNFL 196
           K  ++V   ++E  EE +      SN+ +DVD  FDFSNE P +LEWMS FL
Sbjct: 141 KAQKRVVENAKEVIEENTSRGGEDSNISFDVDEFFDFSNEDPLNLEWMSRFL 192

[Close]

BLAST of Cucsa.340790.2 vs. TrEMBL
Match: M5WVH0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024533mg PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-63
Identity = 136/223 (60.99%), Postives = 161/223 (72.20%), Query Frame = 1


Query: 1   MTEEEEESLKRKVK--QVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWK 60
           M    EES+KRKVK  + ++G   E        VNKGAWTAEED KLA+VI +HGAKRWK
Sbjct: 1   MAPMTEESIKRKVKAGEAMKGSKRE--------VNKGAWTAEEDHKLAEVIEVHGAKRWK 60

Query: 61  SIAAKAGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPG 120
           +IA+KAGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLI+RLHKLLGNRWSLIAGRLPG
Sbjct: 61  TIASKAGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLIVRLHKLLGNRWSLIAGRLPG 120

Query: 121 RTDNEIKNYWNSHLSKKMNQQSEKERRKGCK------------------RKVNTESREEE 180
           RTDNEIKNYWNSHLSK++ Q   KE++ G                    +KV+ E +E+ 
Sbjct: 121 RTDNEIKNYWNSHLSKRIIQ---KEKQSGANPTRQMVSTDQKLSLAEHHQKVHIEMKEDS 180

Query: 181 TSQE------RENSSNL-EYDVDNLFDFSNEGP-DLEWMSNFL 196
            S+E      +++S N+   DVD+ FDFSNEGP +LEW+S FL
Sbjct: 181 LSEEGASFASKDSSKNMNNIDVDDFFDFSNEGPLNLEWVSKFL 212

[Close]

BLAST of Cucsa.340790.2 vs. TrEMBL
Match: A0A067KX10_JATCU (MYB family protein OS=Jatropha curcas GN=JCGZ_24705 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.7e-62
Identity = 123/178 (69.10%), Postives = 142/178 (79.78%), Query Frame = 1


Query: 32  VNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYLRPNIKRGNIS 91
           +NKGAWTAEED+KLA+VI+IHGAKRWK IAAKAGLNRCGKSCRLRWLNYLRPNIKRGNIS
Sbjct: 36  INKGAWTAEEDRKLAEVISIHGAKRWKIIAAKAGLNRCGKSCRLRWLNYLRPNIKRGNIS 95

Query: 92  DQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQ----------SE 151
           DQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKK+N++          +E
Sbjct: 96  DQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKINKKEKLQSGANSVAE 155

Query: 152 KERRKGCKRKVNTESREEETSQEREN---SSNLEYDVDNLFDFSNEGP-DLEWMSNFL 196
           + + +    K+    REE T+    N    S+  ++VD+ FDFSNE P +LEW+S FL
Sbjct: 156 ESKNENKTTKIVEVIREENTTSSNNNGGEDSSSSFNVDDFFDFSNEDPLNLEWVSQFL 213

[Close]

BLAST of Cucsa.340790.2 vs. TrEMBL
Match: U5GIF8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s06320g PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.5e-62
Identity = 125/173 (72.25%), Postives = 142/173 (82.08%), Query Frame = 1


Query: 33  NKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYLRPNIKRGNISD 92
           NKGAWTAEED+KLA+VIAIHGA++WK+IAAKA LNRCGKSCRLRWLNYLRPNIKRGNISD
Sbjct: 20  NKGAWTAEEDRKLAEVIAIHGARKWKTIAAKAALNRCGKSCRLRWLNYLRPNIKRGNISD 79

Query: 93  QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQ------SEKERRK 152
           QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKK++Q+      S KE  +
Sbjct: 80  QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKISQKGKQTGVSTKEDHR 139

Query: 153 GCKR--KVNTESREEETSQER-ENSSNLEYDVDNLFDFSNEGP-DLEWMSNFL 196
             K   K N + +E+  S +R E  S L ++ D+ FDFSNE P +LEWMS FL
Sbjct: 140 VEKNIIKNNLDLKEDNKSSQRGEEESKLNFNADDFFDFSNEDPLNLEWMSRFL 192

[Close]

BLAST of Cucsa.340790.2 vs. TrEMBL
Match: A0A059BZC1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F04423 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.0e-61
Identity = 123/176 (69.89%), Postives = 144/176 (81.82%), Query Frame = 1


Query: 33  NKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYLRPNIKRGNISD 92
           +KGAWT EED+KLA+VIA+HGAKRWK+IAA AGL+RCGKSCRLRWLNYLRPNIKRGNI+D
Sbjct: 11  SKGAWTPEEDRKLAEVIAVHGAKRWKTIAATAGLSRCGKSCRLRWLNYLRPNIKRGNITD 70

Query: 93  QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQ-----------SE 152
           QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKK+ Q+            E
Sbjct: 71  QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQKEKQSEAPKREGKE 130

Query: 153 KERRKGCKRKVNTESREEETSQERENS-SNLEYDVDNLFDFSNEGP-DLEWMSNFL 196
            +RR+G +R V+ E REE +S   E S +++++DVD  FDFSNE   +LEW+S FL
Sbjct: 131 AQRRRGAER-VSVEVREESSSNGGEESKTSVDFDVDEFFDFSNESSLNLEWVSRFL 185

[Close]

BLAST of Cucsa.340790.2 vs. TAIR10
Match: AT4G34990.1 (AT4G34990.1 myb domain protein 32)

HSP 1 Score: 178.3 bits (451), Expect = 4.5e-45
Identity = 88/162 (54.32%), Postives = 110/162 (67.90%), Query Frame = 1


Query: 33  NKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYLRPNIKRGNISD 92
           NKGAWT EED KL   I  HG   W+S+   AGL RCGKSCRLRW+NYLRP++KRGN + 
Sbjct: 13  NKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRGNFTL 72

Query: 93  QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRKGCKRKV 152
           +E+DLI++LH LLGN+WSLIA RLPGRTDNEIKNYWN+H+ +K+        RKG     
Sbjct: 73  EEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKL-------LRKGIDPAT 132

Query: 153 NTESREEETSQERENSSNLEYDVDNLFDFSNEGPDLEWMSNF 195
           +    E +TSQ+  +SS  E   D L    + GP LE ++NF
Sbjct: 133 HRPINETKTSQDSSDSSKTE---DPLVKILSFGPQLEKIANF 164

[Close]

BLAST of Cucsa.340790.2 vs. TAIR10
Match: AT5G14750.1 (AT5G14750.1 myb domain protein 66)

HSP 1 Score: 171.0 bits (432), Expect = 7.2e-43
Identity = 84/167 (50.30%), Postives = 105/167 (62.87%), Query Frame = 1


Query: 29  NGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYLRPNIKRG 88
           N    KG WT EED+ L   +  HG   W  IA K GL RCGKSCRLRW+NYL PN+KRG
Sbjct: 13  NNEYKKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKRG 72

Query: 89  NISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRKGC 148
           N ++QEEDLI+RLHKLLGNRWSLIA R+PGRTDN++KNYWN+HLSKK+  + +K ++   
Sbjct: 73  NFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGIKDQKTKQSNG 132

Query: 149 KRKVNTESREEETSQERENSSNLEYDVDNLFDFSNEGPDLEWMSNFL 196
                        + E    SN+   VDN     +E  +    SN+L
Sbjct: 133 DIVYQINLPNPTETSEETKISNI---VDNNNILGDEIQEDHQGSNYL 176

[Close]

BLAST of Cucsa.340790.2 vs. TAIR10
Match: AT3G13540.1 (AT3G13540.1 myb domain protein 5)

HSP 1 Score: 168.7 bits (426), Expect = 3.6e-42
Identity = 79/132 (59.85%), Postives = 95/132 (71.97%), Query Frame = 1


Query: 31  GVNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYLRPNIKRGNI 90
           G+ +G WT EED+ L   I   G  RW+S+  +AGL RCGKSCRLRW+NYLRP++KRG I
Sbjct: 22  GMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGI 81

Query: 91  SDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRKGCKR 150
           +  EEDLILRLH+LLGNRWSLIAGR+PGRTDNEIKNYWN+HL KK+ +Q    +      
Sbjct: 82  TSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLD 141

Query: 151 KVNTESREEETS 163
             N    EEE S
Sbjct: 142 ANNIHKPEEEVS 153

[Close]

BLAST of Cucsa.340790.2 vs. TAIR10
Match: AT5G40330.1 (AT5G40330.1 myb domain protein 23)

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-41
Identity = 72/103 (69.90%), Postives = 83/103 (80.58%), Query Frame = 1


Query: 34  KGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYLRPNIKRGNISDQ 93
           KG WT EED+ L   +  HG   W  IA K GL RCGKSCRLRW+NYL PN+ RGN +DQ
Sbjct: 14  KGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRGNFTDQ 73

Query: 94  EEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKM 137
           EEDLI+RLHKLLGNRWSLIA R+PGRTDN++KNYWN+HLSKK+
Sbjct: 74  EEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 116

[Close]

BLAST of Cucsa.340790.2 vs. TAIR10
Match: AT5G35550.1 (AT5G35550.1 Duplicated homeodomain-like superfamily protein)

HSP 1 Score: 166.0 bits (419), Expect = 2.3e-41
Identity = 77/130 (59.23%), Postives = 96/130 (73.85%), Query Frame = 1


Query: 27  LRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYLRPNIK 86
           +R   +N+GAWT  ED+ L   I  HG  +W ++  +AGL RCGKSCRLRW NYLRP IK
Sbjct: 9   VRREELNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIK 68

Query: 87  RGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRK 146
           RGNIS  EE+LI+RLH LLGNRWSLIAGRLPGRTDNEIKN+WNS+L K++ +   K+ ++
Sbjct: 69  RGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKRLPKTQTKQPKR 128

Query: 147 GCKRKVNTES 157
             K   N E+
Sbjct: 129 -IKHSTNNEN 137

[Close]

BLAST of Cucsa.340790.2 vs. NCBI nr
Match: gi|659128004|ref|XP_008464000.1| (PREDICTED: transcription factor MYB114-like [Cucumis melo])

HSP 1 Score: 400.2 bits (1027), Expect = 2.1e-108
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 1


Query: 1   MTEEEEESLKRKVKQVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSI 60
           MTEEEEESLKRKVKQVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSI
Sbjct: 1   MTEEEEESLKRKVKQVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSI 60

Query: 61  AAKAGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRT 120
           AAKAGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRT
Sbjct: 61  AAKAGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRT 120

Query: 121 DNEIKNYWNSHLSKKMNQQSEKERRKGCKRKVNTESREEETSQERENSSNLEYDVDNLFD 180
           DNEIKNYWNSHLSKKMNQQSEKERRKGCKRKVNTESREEETSQERENSSNLEYDVDNLFD
Sbjct: 121 DNEIKNYWNSHLSKKMNQQSEKERRKGCKRKVNTESREEETSQERENSSNLEYDVDNLFD 180

Query: 181 FSNEGPDLEWMSNFL 196
           FSNEGPDLEWMSNFL
Sbjct: 181 FSNEGPDLEWMSNFL 195

[Close]

BLAST of Cucsa.340790.2 vs. NCBI nr
Match: gi|778686120|ref|XP_011652333.1| (PREDICTED: transcription factor WER-like isoform X1 [Cucumis sativus])

HSP 1 Score: 385.2 bits (988), Expect = 6.9e-104
Identity = 195/223 (87.44%), Postives = 195/223 (87.44%), Query Frame = 1


Query: 1   MTEEEEESLKRKVKQVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSI 60
           MTEEEEESLKRKVKQVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSI
Sbjct: 1   MTEEEEESLKRKVKQVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSI 60

Query: 61  AAKAG----------------------------LNRCGKSCRLRWLNYLRPNIKRGNISD 120
           AAKAG                            LNRCGKSCRLRWLNYLRPNIKRGNISD
Sbjct: 61  AAKAGPSLSTFNFSFFFPTSHAHIFNGFLNFPGLNRCGKSCRLRWLNYLRPNIKRGNISD 120

Query: 121 QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRKGCKRKV 180
           QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRKGCKRKV
Sbjct: 121 QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRKGCKRKV 180

Query: 181 NTESREEETSQERENSSNLEYDVDNLFDFSNEGPDLEWMSNFL 196
           NTESREEETSQERENSSNLEYDVDNLFDFSNEGPDLEWMSNFL
Sbjct: 181 NTESREEETSQERENSSNLEYDVDNLFDFSNEGPDLEWMSNFL 223

[Close]

BLAST of Cucsa.340790.2 vs. NCBI nr
Match: gi|590620738|ref|XP_007024617.1| (Myb domain protein 23 [Theobroma cacao])

HSP 1 Score: 257.3 bits (656), Expect = 2.2e-65
Identity = 129/172 (75.00%), Postives = 143/172 (83.14%), Query Frame = 1


Query: 32  VNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYLRPNIKRGNIS 91
           VNKGAWTAEED+KLA+VIA+HGAKRWK IA KAGLNRCGKSCRLRW+NYLRPNIKRGNIS
Sbjct: 21  VNKGAWTAEEDRKLAEVIAVHGAKRWKIIAIKAGLNRCGKSCRLRWMNYLRPNIKRGNIS 80

Query: 92  DQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQ---QSEKERRKGC 151
           DQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKK+NQ   QS    R+GC
Sbjct: 81  DQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKINQKEKQSGATTREGC 140

Query: 152 K--RKVNTESRE--EETSQERENSSNLEYDVDNLFDFSNEGP-DLEWMSNFL 196
           K  ++V   ++E  EE +      SN+ +DVD  FDFSNE P +LEWMS FL
Sbjct: 141 KAQKRVVENAKEVIEENTSRGGEDSNISFDVDEFFDFSNEDPLNLEWMSRFL 192

[Close]

BLAST of Cucsa.340790.2 vs. NCBI nr
Match: gi|470140025|ref|XP_004305745.1| (PREDICTED: transcription factor WER-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 251.9 bits (642), Expect = 9.1e-64
Identity = 137/230 (59.57%), Postives = 162/230 (70.43%), Query Frame = 1


Query: 1   MTEEEEESLKRKVKQVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSI 60
           M  + EES KR+V ++   +       R   VNKGAWTAEEDQKLA+VIAIHGAK+WKSI
Sbjct: 1   MAPKREESAKREVMKMKSLEAVMKNTKRE--VNKGAWTAEEDQKLAEVIAIHGAKKWKSI 60

Query: 61  AAKAGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRT 120
           AAKAGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRT
Sbjct: 61  AAKAGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRT 120

Query: 121 DNEIKNYWNSHLSKKMNQQSEKER---------------------RKGCKRKVNTESREE 180
           DNEIKNYWNSHLSK+++ Q EK+R                     R G + K+  E +++
Sbjct: 121 DNEIKNYWNSHLSKRIS-QIEKQRSTGETDDSTRQIPTVDQKPSSRLGEQNKIFGEMKQD 180

Query: 181 ETSQE-------------RENSSNLEYDVDNLFDFSNEGP-DLEWMSNFL 196
            +S+E              E+ SN + D+D+ FDFSNEGP +LEW++ FL
Sbjct: 181 SSSEEGTTTSASNKGGDDHEDYSNSDIDIDDFFDFSNEGPFNLEWVNKFL 227

[Close]

BLAST of Cucsa.340790.2 vs. NCBI nr
Match: gi|595952841|ref|XP_007216465.1| (hypothetical protein PRUPE_ppa024533mg [Prunus persica])

HSP 1 Score: 250.8 bits (639), Expect = 2.0e-63
Identity = 136/223 (60.99%), Postives = 161/223 (72.20%), Query Frame = 1


Query: 1   MTEEEEESLKRKVK--QVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWK 60
           M    EES+KRKVK  + ++G   E        VNKGAWTAEED KLA+VI +HGAKRWK
Sbjct: 1   MAPMTEESIKRKVKAGEAMKGSKRE--------VNKGAWTAEEDHKLAEVIEVHGAKRWK 60

Query: 61  SIAAKAGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPG 120
           +IA+KAGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLI+RLHKLLGNRWSLIAGRLPG
Sbjct: 61  TIASKAGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLIVRLHKLLGNRWSLIAGRLPG 120

Query: 121 RTDNEIKNYWNSHLSKKMNQQSEKERRKGCK------------------RKVNTESREEE 180
           RTDNEIKNYWNSHLSK++ Q   KE++ G                    +KV+ E +E+ 
Sbjct: 121 RTDNEIKNYWNSHLSKRIIQ---KEKQSGANPTRQMVSTDQKLSLAEHHQKVHIEMKEDS 180

Query: 181 TSQE------RENSSNL-EYDVDNLFDFSNEGP-DLEWMSNFL 196
            S+E      +++S N+   DVD+ FDFSNEGP +LEW+S FL
Sbjct: 181 LSEEGASFASKDSSKNMNNIDVDDFFDFSNEGPLNLEWVSKFL 212

The following BLAST results are available for this feature:

BLAST of Cucsa.340790.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MYB32_ARATH	8.0e-44	54.32	Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1	[more]
MYBC_MAIZE	7.5e-42	72.38	Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1	[more]
WER_ARATH	1.3e-41	50.30	Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1	[more]
MYB5_ARATH	6.3e-41	59.85	Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1	[more]
MYB23_ARATH	3.1e-40	69.90	Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1	[more]

BLAST of Cucsa.340790.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061GJK0_THECC	1.5e-65	75.00	Myb domain protein 23 OS=Theobroma cacao GN=TCM_029126 PE=4 SV=1	[more]
M5WVH0_PRUPE	1.4e-63	60.99	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024533mg PE=4 SV=1	[more]
A0A067KX10_JATCU	2.7e-62	69.10	MYB family protein OS=Jatropha curcas GN=JCGZ_24705 PE=4 SV=1	[more]
U5GIF8_POPTR	4.5e-62	72.25	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s06320g PE=4 SV=1	[more]
A0A059BZC1_EUCGR	1.0e-61	69.89	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F04423 PE=4 SV=1	[more]

BLAST of Cucsa.340790.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34990.1	4.5e-45	54.32	myb domain protein 32	[more]
AT5G14750.1	7.2e-43	50.30	myb domain protein 66	[more]
AT3G13540.1	3.6e-42	59.85	myb domain protein 5	[more]
AT5G40330.1	1.8e-41	69.90	myb domain protein 23	[more]
AT5G35550.1	2.3e-41	59.23	Duplicated homeodomain-like superfamily protein	[more]

BLAST of Cucsa.340790.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128004\|ref\|XP_008464000.1\|	2.1e-108	100.00	PREDICTED: transcription factor MYB114-like [Cucumis melo]	[more]
gi\|778686120\|ref\|XP_011652333.1\|	6.9e-104	87.44	PREDICTED: transcription factor WER-like isoform X1 [Cucumis sativus]	[more]
gi\|590620738\|ref\|XP_007024617.1\|	2.2e-65	75.00	Myb domain protein 23 [Theobroma cacao]	[more]
gi\|470140025\|ref\|XP_004305745.1\|	9.1e-64	59.57	PREDICTED: transcription factor WER-like [Fragaria vesca subsp. vesca]	[more]
gi\|595952841\|ref\|XP_007216465.1\|	2.0e-63	60.99	hypothetical protein PRUPE_ppa024533mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.340790	Cucsa.340790	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.340790.2	Cucsa.340790.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.340790.2.five_prime_UTR.1	Cucsa.340790.2.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.340790.2.CDS.1	Cucsa.340790.2.CDS.1	CDS
Cucsa.340790.2.CDS.2	Cucsa.340790.2.CDS.2	CDS
Cucsa.340790.2.CDS.3	Cucsa.340790.2.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.340790.2.three_prime_UTR.1	Cucsa.340790.2.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 34..81 score: 1.6E-19coord: 87..132 score: 1.6
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 86..134 score: 1.9E-15coord: 33..83 score: 5.0
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 89..137 score: 3.2E-25coord: 35..88 score: 2.7
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 32..128 score: 5.35
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 86..136 score: 20.433coord: 29..85 score: 25
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 10..186 score: 4.0
None	No IPR available	PANTHER	PTHR10641:SF580	SUBFAMILY NOT NAMED	coord: 10..186 score: 4.0