Cucsa.340790.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.340790.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	MYB transcription factor
Location	scaffold03356 : 3179106 .. 3180276 (+)
Sequence length	1083

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAAACCATAATCTCTCTCTCTATCTCTATCTCTTTAAAGTTCCACTTCCAATGACTGAAGAAGAAGAAGAGTCTCTGAAAAGAAAAGTGAAACAAGTTGTTGAAGGAGACATAAATGAGGCTGAAATTTTGAGAAATGGAGGAGTCAATAAAGGCGCTTGGACTGCAGAAGAAGATCAAAAATTGGCTCAAGTTATTGCCATTCATGGTGCAAAAAGGTGGAAGTCCATTGCAGCTAAAGCAGGTCCATCCCTTTCAACTTTCAACTTCTCCTTTTtCTTTCCAACTTCCCACGCACATATATTCAATGGGTTTCTAAATTTTCCAGGCCTCAATCGTTGTGGGAAGAGTTGCAGACTAAGATGGCTCAATTATCTCAGACCTAACATTAAGAGAGGAAATATATCAGATCAAGAAGAAGATTTGATCCTCAGGCTTCATAAACTTCTTGGCAACAGGTCAAATTTTCTATCCCCTTTCATTCTATATTTCTCAACTTTTCTTGCTTTCATTAACTTAATAAAAGTTTTGGTTTTCGGAGTTTAGGTGGTCTTTGATTGCTGGGAGACTGCCAGGGCGAACAGATAACGAGATCAAGAACTACTGGAATTCTCATTTGAGCAAAAAAATGAACCAACAGAGTGAAAAaGAAAGAAGGAAAGGGTGTAAAAGAAAAGTGAACACAGAGTCTAGAGAAGAGGAAACGTCTCAAGAACGTGAAAACAGCTCAAACTTGGAGTATGATGTCGATAACTTGTTTGATTTTTCCAATGAGGGACCTGATTTGGAGTGGATGAGTAATTTCCTGTAATTGGGTATCATAAGCAGCAACTATAAAGCTTAGGTTGTTAGTGCACTCTCATGCAAATCATTACTAATTTATCTAAAAATTTAATCGTTTCACTCATAGCCTTTACCAAAATATTTGGTTGCTGATGTACAGATTCCTACTAACTTCATCTTCTGCAATCATCAACTATCAAAATCATATTCCAAAGATCATAATTCTATACACATCTATAGGGAGTCTGCAAGAAACATCTAGGGCCAATATGGTAATCTCCTAAATATAAAGAGAGAGACACAGAGAGATCTTGTGCTACATATAGTAATCCTCCAAGTTTAGAGAGAGAGAGGGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGG

mRNA sequence

AAATAAACCATAATCTCTCTCTCTATCTCTATCTCTTTAAAGTTCCACTTCCAATGACTGAAGAAGAAGAAGAGTCTCTGAAAAGAAAAGTGAAACAAGTTGTTGAAGGAGACATAAATGAGGCTGAAATTTTGAGAAATGGAGGAGTCAATAAAGGCGCTTGGACTGCAGAAGAAGATCAAAAATTGGCTCAAGTTATTGCCATTCATGGTGCAAAAAGGTGGAAGTCCATTGCAGCTAAAGCAGGTCCATCCCTTTCAACTTTCAACTTCTCCTTTTTCTTTCCAACTTCCCACGCACATATATTCAATGGGTTTCTAAATTTTCCAGGCCTCAATCGTTGTGGGAAGAGTTGCAGACTAAGATGGCTCAATTATCTCAGACCTAACATTAAGAGAGGAAATATATCAGATCAAGAAGAAGATTTGATCCTCAGGCTTCATAAACTTCTTGGCAACAGGTGGTCTTTGATTGCTGGGAGACTGCCAGGGCGAACAGATAACGAGATCAAGAACTACTGGAATTCTCATTTGAGCAAAAAAATGAACCAACAGAGTGAAAAAGAAAGAAGGAAAGGGTGTAAAAGAAAAGTGAACACAGAGTCTAGAGAAGAGGAAACGTCTCAAGAACGTGAAAACAGCTCAAACTTGGAGTATGATGTCGATAACTTGTTTGATTTTTCCAATGAGGGACCTGATTTGGAGTGGATGAGTAATTTCCTGTAATTGGGTATCATAAGCAGCAACTATAAAGCTTAGGTTGTTAGTGCACTCTCATGCAAATCATTACTAATTTATCTAAAAATTTAATCGTTTCACTCATAGCCTTTACCAAAATATTTGGTTGCTGATGTACAGATTCCTACTAACTTCATCTTCTGCAATCATCAACTATCAAAATCATATTCCAAAGATCATAATTCTATACACATCTATAGGGAGTCTGCAAGAAACATCTAGGGCCAATATGGTAATCTCCTAAATATAAAGAGAGAGACACAGAGAGATCTTGTGCTACATATAGTAATCCTCCAAGTTTagagagagagagggagagagagggagagagagagagagagagagG

Coding sequence (CDS)

ATGACTGAAGAAGAAGAAGAGTCTCTGAAAAGAAAAGTGAAACAAGTTGTTGAAGGAGACATAAATGAGGCTGAAATTTTGAGAAATGGAGGAGTCAATAAAGGCGCTTGGACTGCAGAAGAAGATCAAAAATTGGCTCAAGTTATTGCCATTCATGGTGCAAAAAGGTGGAAGTCCATTGCAGCTAAAGCAGGTCCATCCCTTTCAACTTTCAACTTCTCCTTTTtCTTTCCAACTTCCCACGCACATATATTCAATGGGTTTCTAAATTTTCCAGGCCTCAATCGTTGTGGGAAGAGTTGCAGACTAAGATGGCTCAATTATCTCAGACCTAACATTAAGAGAGGAAATATATCAGATCAAGAAGAAGATTTGATCCTCAGGCTTCATAAACTTCTTGGCAACAGGTGGTCTTTGATTGCTGGGAGACTGCCAGGGCGAACAGATAACGAGATCAAGAACTACTGGAATTCTCATTTGAGCAAAAAAATGAACCAACAGAGTGAAAAaGAAAGAAGGAAAGGGTGTAAAAGAAAAGTGAACACAGAGTCTAGAGAAGAGGAAACGTCTCAAGAACGTGAAAACAGCTCAAACTTGGAGTATGATGTCGATAACTTGTTTGATTTTTCCAATGAGGGACCTGATTTGGAGTGGATGAGTAATTTCCTGTAA

Protein sequence

MTEEEEESLKRKVKQVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGPSLSTFNFSFFFPTSHAHIFNGFLNFPGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRKGCKRKVNTESREEETSQERENSSNLEYDVDNLFDFSNEGPDLEWMSNFL*

Homology

[Close]

BLAST of Cucsa.340790.1 vs. Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.0e-39
Identity = 88/190 (46.32%), Postives = 110/190 (57.89%), Query Frame = 1


Query: 33  NKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGPSLSTFNFSFFFPTSHAHIFNGFLNFP 92
           NKGAWT EED KL   I  HG   W+S+   AG                           
Sbjct: 13  NKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAG--------------------------- 72

Query: 93  GLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEI 152
            L RCGKSCRLRW+NYLRP++KRGN + +E+DLI++LH LLGN+WSLIA RLPGRTDNEI
Sbjct: 73  -LQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEI 132

Query: 153 KNYWNSHLSKKMNQQSEKERRKGCKRKVNTESREEETSQERENSSNLEYDVDNLFDFSNE 212
           KNYWN+H+ +K+        RKG     +    E +TSQ+  +SS  E   D L    + 
Sbjct: 133 KNYWNTHVKRKL-------LRKGIDPATHRPINETKTSQDSSDSSKTE---DPLVKILSF 164

Query: 213 GPDLEWMSNF 223
           GP LE ++NF
Sbjct: 193 GPQLEKIANF 164

[Close]

BLAST of Cucsa.340790.1 vs. Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.9e-37
Identity = 76/133 (57.14%), Postives = 88/133 (66.17%), Query Frame = 1


Query: 31  GVNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGPSLSTFNFSFFFPTSHAHIFNGFLN 90
           GV +GAWT++ED  LA  +  HG  +W+ +  KAG                         
Sbjct: 11  GVKRGAWTSKEDDALAAYVKAHGEGKWREVPQKAG------------------------- 70

Query: 91  FPGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDN 150
              L RCGKSCRLRWLNYLRPNI+RGNIS  EEDLI+RLH+LLGNRWSLIAGRLPGRTDN
Sbjct: 71  ---LRRCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDN 115

Query: 151 EIKNYWNSHLSKK 164
           EIKNYWNS L ++
Sbjct: 131 EIKNYWNSTLGRR 115

[Close]

BLAST of Cucsa.340790.1 vs. Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.9e-37
Identity = 84/195 (43.08%), Postives = 105/195 (53.85%), Query Frame = 1


Query: 29  NGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGPSLSTFNFSFFFPTSHAHIFNGF 88
           N    KG WT EED+ L   +  HG   W  IA K G                       
Sbjct: 13  NNEYKKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTG----------------------- 72

Query: 89  LNFPGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRT 148
                L RCGKSCRLRW+NYL PN+KRGN ++QEEDLI+RLHKLLGNRWSLIA R+PGRT
Sbjct: 73  -----LKRCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRT 132

Query: 149 DNEIKNYWNSHLSKKMNQQSEKERRKGCKRKVNTESREEETSQERENSSNLEYDVDNLFD 208
           DN++KNYWN+HLSKK+  + +K ++                + E    SN+   VDN   
Sbjct: 133 DNQVKNYWNTHLSKKLGIKDQKTKQSNGDIVYQINLPNPTETSEETKISNI---VDNNNI 176

Query: 209 FSNEGPDLEWMSNFL 224
             +E  +    SN+L
Sbjct: 193 LGDEIQEDHQGSNYL 176

[Close]

BLAST of Cucsa.340790.1 vs. Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.4e-36
Identity = 79/160 (49.38%), Postives = 95/160 (59.38%), Query Frame = 1


Query: 31  GVNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGPSLSTFNFSFFFPTSHAHIFNGFLN 90
           G+ +G WT EED+ L   I   G  RW+S+  +AG                         
Sbjct: 22  GMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG------------------------- 81

Query: 91  FPGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDN 150
              L RCGKSCRLRW+NYLRP++KRG I+  EEDLILRLH+LLGNRWSLIAGR+PGRTDN
Sbjct: 82  ---LLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDN 141

Query: 151 EIKNYWNSHLSKKMNQQSEKERRKGCKRKVNTESREEETS 191
           EIKNYWN+HL KK+ +Q    +        N    EEE S
Sbjct: 142 EIKNYWNTHLRKKLLRQGIDPQTHKPLDANNIHKPEEEVS 153

[Close]

BLAST of Cucsa.340790.1 vs. Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-35
Identity = 72/131 (54.96%), Postives = 83/131 (63.36%), Query Frame = 1


Query: 34  KGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGPSLSTFNFSFFFPTSHAHIFNGFLNFPG 93
           KG WT EED+ L   +  HG   W  IA K G                            
Sbjct: 14  KGLWTVEEDKILMDYVRTHGQGHWNRIAKKTG---------------------------- 73

Query: 94  LNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIK 153
           L RCGKSCRLRW+NYL PN+ RGN +DQEEDLI+RLHKLLGNRWSLIA R+PGRTDN++K
Sbjct: 74  LKRCGKSCRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVK 116

Query: 154 NYWNSHLSKKM 165
           NYWN+HLSKK+
Sbjct: 134 NYWNTHLSKKL 116

[Close]

BLAST of Cucsa.340790.1 vs. TrEMBL
Match: A0A061GJK0_THECC (Myb domain protein 23 OS=Theobroma cacao GN=TCM_029126 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 5.7e-61
Identity = 129/200 (64.50%), Postives = 143/200 (71.50%), Query Frame = 1


Query: 32  VNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGPSLSTFNFSFFFPTSHAHIFNGFLNF 91
           VNKGAWTAEED+KLA+VIA+HGAKRWK IA KAG                          
Sbjct: 21  VNKGAWTAEEDRKLAEVIAVHGAKRWKIIAIKAG-------------------------- 80

Query: 92  PGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNE 151
             LNRCGKSCRLRW+NYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNE
Sbjct: 81  --LNRCGKSCRLRWMNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNE 140

Query: 152 IKNYWNSHLSKKMNQ---QSEKERRKGCK--RKVNTESRE--EETSQERENSSNLEYDVD 211
           IKNYWNSHLSKK+NQ   QS    R+GCK  ++V   ++E  EE +      SN+ +DVD
Sbjct: 141 IKNYWNSHLSKKINQKEKQSGATTREGCKAQKRVVENAKEVIEENTSRGGEDSNISFDVD 192

Query: 212 NLFDFSNEGP-DLEWMSNFL 224
             FDFSNE P +LEWMS FL
Sbjct: 201 EFFDFSNEDPLNLEWMSRFL 192

[Close]

BLAST of Cucsa.340790.1 vs. TrEMBL
Match: A5BR18_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029986 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 5.4e-59
Identity = 125/220 (56.82%), Postives = 145/220 (65.91%), Query Frame = 1


Query: 32  VNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAG-----------------PSLSTFNFS 91
           +N+GAWTAEED+KLA+VI +HGAKRWK IA  AG                 P L+   F 
Sbjct: 19  MNRGAWTAEEDRKLAEVIEVHGAKRWKMIATTAGLFVYDATEMKPISIMLYPVLTLMGFW 78

Query: 92  FFFPTSHAHIFNGFLNFPGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLG 151
           FFF               GLNRCGKSCRLRW+NYLRPNIKRGNISDQEEDLILRLHKLLG
Sbjct: 79  FFFA--------------GLNRCGKSCRLRWMNYLRPNIKRGNISDQEEDLILRLHKLLG 138

Query: 152 NRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEK-ERRKGCKRKVNT---------ES 211
           NRWSLIAGRLPGRTDNEIKNYWNSHLSKK+ Q+ +     +GC +   T         E 
Sbjct: 139 NRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQEKQSGGSTRGCSKLQRTRVVEEVNVVEV 198

Query: 212 REEETSQERENSSNLEYDVDNLFDFSNEGP-DLEWMSNFL 224
           + E+TS   +  S + ++VD  FDFS EGP +LEW+S FL
Sbjct: 199 KREDTSNGGDQCSKMNFNVDEFFDFSEEGPLNLEWVSQFL 224

[Close]

BLAST of Cucsa.340790.1 vs. TrEMBL
Match: M5WVH0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024533mg PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 5.4e-59
Identity = 136/251 (54.18%), Postives = 161/251 (64.14%), Query Frame = 1


Query: 1   MTEEEEESLKRKVK--QVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWK 60
           M    EES+KRKVK  + ++G   E        VNKGAWTAEED KLA+VI +HGAKRWK
Sbjct: 1   MAPMTEESIKRKVKAGEAMKGSKRE--------VNKGAWTAEEDHKLAEVIEVHGAKRWK 60

Query: 61  SIAAKAGPSLSTFNFSFFFPTSHAHIFNGFLNFPGLNRCGKSCRLRWLNYLRPNIKRGNI 120
           +IA+KAG                            LNRCGKSCRLRWLNYLRPNIKRGNI
Sbjct: 61  TIASKAG----------------------------LNRCGKSCRLRWLNYLRPNIKRGNI 120

Query: 121 SDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRKGCK- 180
           SDQEEDLI+RLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSK++ Q   KE++ G   
Sbjct: 121 SDQEEDLIVRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKRIIQ---KEKQSGANP 180

Query: 181 -----------------RKVNTESREEETSQE------RENSSNL-EYDVDNLFDFSNEG 224
                            +KV+ E +E+  S+E      +++S N+   DVD+ FDFSNEG
Sbjct: 181 TRQMVSTDQKLSLAEHHQKVHIEMKEDSLSEEGASFASKDSSKNMNNIDVDDFFDFSNEG 212

[Close]

BLAST of Cucsa.340790.1 vs. TrEMBL
Match: A0A067KX10_JATCU (MYB family protein OS=Jatropha curcas GN=JCGZ_24705 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.0e-57
Identity = 123/206 (59.71%), Postives = 142/206 (68.93%), Query Frame = 1


Query: 32  VNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGPSLSTFNFSFFFPTSHAHIFNGFLNF 91
           +NKGAWTAEED+KLA+VI+IHGAKRWK IAAKAG                          
Sbjct: 36  INKGAWTAEEDRKLAEVISIHGAKRWKIIAAKAG-------------------------- 95

Query: 92  PGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNE 151
             LNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNE
Sbjct: 96  --LNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNE 155

Query: 152 IKNYWNSHLSKKMNQQ----------SEKERRKGCKRKVNTESREEETSQEREN---SSN 211
           IKNYWNSHLSKK+N++          +E+ + +    K+    REE T+    N    S+
Sbjct: 156 IKNYWNSHLSKKINKKEKLQSGANSVAEESKNENKTTKIVEVIREENTTSSNNNGGEDSS 213

Query: 212 LEYDVDNLFDFSNEGP-DLEWMSNFL 224
             ++VD+ FDFSNE P +LEW+S FL
Sbjct: 216 SSFNVDDFFDFSNEDPLNLEWVSQFL 213

[Close]

BLAST of Cucsa.340790.1 vs. TrEMBL
Match: U5GIF8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s06320g PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.7e-57
Identity = 125/201 (62.19%), Postives = 142/201 (70.65%), Query Frame = 1


Query: 33  NKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGPSLSTFNFSFFFPTSHAHIFNGFLNFP 92
           NKGAWTAEED+KLA+VIAIHGA++WK+IAAKA                            
Sbjct: 20  NKGAWTAEEDRKLAEVIAIHGARKWKTIAAKAA--------------------------- 79

Query: 93  GLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEI 152
            LNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEI
Sbjct: 80  -LNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEI 139

Query: 153 KNYWNSHLSKKMNQQ------SEKERRKGCKR--KVNTESREEETSQER-ENSSNLEYDV 212
           KNYWNSHLSKK++Q+      S KE  +  K   K N + +E+  S +R E  S L ++ 
Sbjct: 140 KNYWNSHLSKKISQKGKQTGVSTKEDHRVEKNIIKNNLDLKEDNKSSQRGEEESKLNFNA 192

Query: 213 DNLFDFSNEGP-DLEWMSNFL 224
           D+ FDFSNE P +LEWMS FL
Sbjct: 200 DDFFDFSNEDPLNLEWMSRFL 192

[Close]

BLAST of Cucsa.340790.1 vs. TAIR10
Match: AT4G34990.1 (AT4G34990.1 myb domain protein 32)

HSP 1 Score: 163.3 bits (412), Expect = 1.7e-40
Identity = 88/190 (46.32%), Postives = 110/190 (57.89%), Query Frame = 1


Query: 33  NKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGPSLSTFNFSFFFPTSHAHIFNGFLNFP 92
           NKGAWT EED KL   I  HG   W+S+   AG                           
Sbjct: 13  NKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAG--------------------------- 72

Query: 93  GLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEI 152
            L RCGKSCRLRW+NYLRP++KRGN + +E+DLI++LH LLGN+WSLIA RLPGRTDNEI
Sbjct: 73  -LQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEI 132

Query: 153 KNYWNSHLSKKMNQQSEKERRKGCKRKVNTESREEETSQERENSSNLEYDVDNLFDFSNE 212
           KNYWN+H+ +K+        RKG     +    E +TSQ+  +SS  E   D L    + 
Sbjct: 133 KNYWNTHVKRKL-------LRKGIDPATHRPINETKTSQDSSDSSKTE---DPLVKILSF 164

Query: 213 GPDLEWMSNF 223
           GP LE ++NF
Sbjct: 193 GPQLEKIANF 164

[Close]

BLAST of Cucsa.340790.1 vs. TAIR10
Match: AT5G14750.1 (AT5G14750.1 myb domain protein 66)

HSP 1 Score: 156.0 bits (393), Expect = 2.7e-38
Identity = 84/195 (43.08%), Postives = 105/195 (53.85%), Query Frame = 1


Query: 29  NGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGPSLSTFNFSFFFPTSHAHIFNGF 88
           N    KG WT EED+ L   +  HG   W  IA K G                       
Sbjct: 13  NNEYKKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTG----------------------- 72

Query: 89  LNFPGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRT 148
                L RCGKSCRLRW+NYL PN+KRGN ++QEEDLI+RLHKLLGNRWSLIA R+PGRT
Sbjct: 73  -----LKRCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRT 132

Query: 149 DNEIKNYWNSHLSKKMNQQSEKERRKGCKRKVNTESREEETSQERENSSNLEYDVDNLFD 208
           DN++KNYWN+HLSKK+  + +K ++                + E    SN+   VDN   
Sbjct: 133 DNQVKNYWNTHLSKKLGIKDQKTKQSNGDIVYQINLPNPTETSEETKISNI---VDNNNI 176

Query: 209 FSNEGPDLEWMSNFL 224
             +E  +    SN+L
Sbjct: 193 LGDEIQEDHQGSNYL 176

[Close]

BLAST of Cucsa.340790.1 vs. TAIR10
Match: AT3G13540.1 (AT3G13540.1 myb domain protein 5)

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-37
Identity = 79/160 (49.38%), Postives = 95/160 (59.38%), Query Frame = 1


Query: 31  GVNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGPSLSTFNFSFFFPTSHAHIFNGFLN 90
           G+ +G WT EED+ L   I   G  RW+S+  +AG                         
Sbjct: 22  GMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG------------------------- 81

Query: 91  FPGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDN 150
              L RCGKSCRLRW+NYLRP++KRG I+  EEDLILRLH+LLGNRWSLIAGR+PGRTDN
Sbjct: 82  ---LLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDN 141

Query: 151 EIKNYWNSHLSKKMNQQSEKERRKGCKRKVNTESREEETS 191
           EIKNYWN+HL KK+ +Q    +        N    EEE S
Sbjct: 142 EIKNYWNTHLRKKLLRQGIDPQTHKPLDANNIHKPEEEVS 153

[Close]

BLAST of Cucsa.340790.1 vs. TAIR10
Match: AT5G40330.1 (AT5G40330.1 myb domain protein 23)

HSP 1 Score: 151.4 bits (381), Expect = 6.7e-37
Identity = 72/131 (54.96%), Postives = 83/131 (63.36%), Query Frame = 1


Query: 34  KGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGPSLSTFNFSFFFPTSHAHIFNGFLNFPG 93
           KG WT EED+ L   +  HG   W  IA K G                            
Sbjct: 14  KGLWTVEEDKILMDYVRTHGQGHWNRIAKKTG---------------------------- 73

Query: 94  LNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIK 153
           L RCGKSCRLRW+NYL PN+ RGN +DQEEDLI+RLHKLLGNRWSLIA R+PGRTDN++K
Sbjct: 74  LKRCGKSCRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVK 116

Query: 154 NYWNSHLSKKM 165
           NYWN+HLSKK+
Sbjct: 134 NYWNTHLSKKL 116

[Close]

BLAST of Cucsa.340790.1 vs. TAIR10
Match: AT5G35550.1 (AT5G35550.1 Duplicated homeodomain-like superfamily protein)

HSP 1 Score: 151.0 bits (380), Expect = 8.8e-37
Identity = 77/158 (48.73%), Postives = 96/158 (60.76%), Query Frame = 1


Query: 27  LRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGPSLSTFNFSFFFPTSHAHIFN 86
           +R   +N+GAWT  ED+ L   I  HG  +W ++  +AG                     
Sbjct: 9   VRREELNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAG--------------------- 68

Query: 87  GFLNFPGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPG 146
                  L RCGKSCRLRW NYLRP IKRGNIS  EE+LI+RLH LLGNRWSLIAGRLPG
Sbjct: 69  -------LKRCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPG 128

Query: 147 RTDNEIKNYWNSHLSKKMNQQSEKERRKGCKRKVNTES 185
           RTDNEIKN+WNS+L K++ +   K+ ++  K   N E+
Sbjct: 129 RTDNEIKNHWNSNLRKRLPKTQTKQPKR-IKHSTNNEN 137

[Close]

BLAST of Cucsa.340790.1 vs. NCBI nr
Match: gi|778686120|ref|XP_011652333.1| (PREDICTED: transcription factor WER-like isoform X1 [Cucumis sativus])

HSP 1 Score: 460.7 bits (1184), Expect = 1.5e-126
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1


Query: 1   MTEEEEESLKRKVKQVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSI 60
           MTEEEEESLKRKVKQVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSI
Sbjct: 1   MTEEEEESLKRKVKQVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSI 60

Query: 61  AAKAGPSLSTFNFSFFFPTSHAHIFNGFLNFPGLNRCGKSCRLRWLNYLRPNIKRGNISD 120
           AAKAGPSLSTFNFSFFFPTSHAHIFNGFLNFPGLNRCGKSCRLRWLNYLRPNIKRGNISD
Sbjct: 61  AAKAGPSLSTFNFSFFFPTSHAHIFNGFLNFPGLNRCGKSCRLRWLNYLRPNIKRGNISD 120

Query: 121 QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRKGCKRKV 180
           QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRKGCKRKV
Sbjct: 121 QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRKGCKRKV 180

Query: 181 NTESREEETSQERENSSNLEYDVDNLFDFSNEGPDLEWMSNFL 224
           NTESREEETSQERENSSNLEYDVDNLFDFSNEGPDLEWMSNFL
Sbjct: 181 NTESREEETSQERENSSNLEYDVDNLFDFSNEGPDLEWMSNFL 223

[Close]

BLAST of Cucsa.340790.1 vs. NCBI nr
Match: gi|659128004|ref|XP_008464000.1| (PREDICTED: transcription factor MYB114-like [Cucumis melo])

HSP 1 Score: 385.2 bits (988), Expect = 7.9e-104
Identity = 195/223 (87.44%), Postives = 195/223 (87.44%), Query Frame = 1


Query: 1   MTEEEEESLKRKVKQVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSI 60
           MTEEEEESLKRKVKQVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSI
Sbjct: 1   MTEEEEESLKRKVKQVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSI 60

Query: 61  AAKAGPSLSTFNFSFFFPTSHAHIFNGFLNFPGLNRCGKSCRLRWLNYLRPNIKRGNISD 120
           AAKAG                            LNRCGKSCRLRWLNYLRPNIKRGNISD
Sbjct: 61  AAKAG----------------------------LNRCGKSCRLRWLNYLRPNIKRGNISD 120

Query: 121 QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRKGCKRKV 180
           QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRKGCKRKV
Sbjct: 121 QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKERRKGCKRKV 180

Query: 181 NTESREEETSQERENSSNLEYDVDNLFDFSNEGPDLEWMSNFL 224
           NTESREEETSQERENSSNLEYDVDNLFDFSNEGPDLEWMSNFL
Sbjct: 181 NTESREEETSQERENSSNLEYDVDNLFDFSNEGPDLEWMSNFL 195

[Close]

BLAST of Cucsa.340790.1 vs. NCBI nr
Match: gi|590620738|ref|XP_007024617.1| (Myb domain protein 23 [Theobroma cacao])

HSP 1 Score: 242.3 bits (617), Expect = 8.2e-61
Identity = 129/200 (64.50%), Postives = 143/200 (71.50%), Query Frame = 1


Query: 32  VNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGPSLSTFNFSFFFPTSHAHIFNGFLNF 91
           VNKGAWTAEED+KLA+VIA+HGAKRWK IA KAG                          
Sbjct: 21  VNKGAWTAEEDRKLAEVIAVHGAKRWKIIAIKAG-------------------------- 80

Query: 92  PGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNE 151
             LNRCGKSCRLRW+NYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNE
Sbjct: 81  --LNRCGKSCRLRWMNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNE 140

Query: 152 IKNYWNSHLSKKMNQ---QSEKERRKGCK--RKVNTESRE--EETSQERENSSNLEYDVD 211
           IKNYWNSHLSKK+NQ   QS    R+GCK  ++V   ++E  EE +      SN+ +DVD
Sbjct: 141 IKNYWNSHLSKKINQKEKQSGATTREGCKAQKRVVENAKEVIEENTSRGGEDSNISFDVD 192

Query: 212 NLFDFSNEGP-DLEWMSNFL 224
             FDFSNE P +LEWMS FL
Sbjct: 201 EFFDFSNEDPLNLEWMSRFL 192

[Close]

BLAST of Cucsa.340790.1 vs. NCBI nr
Match: gi|470140025|ref|XP_004305745.1| (PREDICTED: transcription factor WER-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 236.9 bits (603), Expect = 3.5e-59
Identity = 137/258 (53.10%), Postives = 162/258 (62.79%), Query Frame = 1


Query: 1   MTEEEEESLKRKVKQVVEGDINEAEILRNGGVNKGAWTAEEDQKLAQVIAIHGAKRWKSI 60
           M  + EES KR+V ++   +       R   VNKGAWTAEEDQKLA+VIAIHGAK+WKSI
Sbjct: 1   MAPKREESAKREVMKMKSLEAVMKNTKRE--VNKGAWTAEEDQKLAEVIAIHGAKKWKSI 60

Query: 61  AAKAGPSLSTFNFSFFFPTSHAHIFNGFLNFPGLNRCGKSCRLRWLNYLRPNIKRGNISD 120
           AAKAG                            LNRCGKSCRLRWLNYLRPNIKRGNISD
Sbjct: 61  AAKAG----------------------------LNRCGKSCRLRWLNYLRPNIKRGNISD 120

Query: 121 QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEKER-------- 180
           QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSK+++ Q EK+R        
Sbjct: 121 QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKRIS-QIEKQRSTGETDDS 180

Query: 181 -------------RKGCKRKVNTESREEETSQE-------------RENSSNLEYDVDNL 224
                        R G + K+  E +++ +S+E              E+ SN + D+D+ 
Sbjct: 181 TRQIPTVDQKPSSRLGEQNKIFGEMKQDSSSEEGTTTSASNKGGDDHEDYSNSDIDIDDF 227

[Close]

BLAST of Cucsa.340790.1 vs. NCBI nr
Match: gi|147832539|emb|CAN74896.1| (hypothetical protein VITISV_029986 [Vitis vinifera])

HSP 1 Score: 235.7 bits (600), Expect = 7.7e-59
Identity = 125/220 (56.82%), Postives = 145/220 (65.91%), Query Frame = 1


Query: 32  VNKGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAG-----------------PSLSTFNFS 91
           +N+GAWTAEED+KLA+VI +HGAKRWK IA  AG                 P L+   F 
Sbjct: 19  MNRGAWTAEEDRKLAEVIEVHGAKRWKMIATTAGLFVYDATEMKPISIMLYPVLTLMGFW 78

Query: 92  FFFPTSHAHIFNGFLNFPGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLG 151
           FFF               GLNRCGKSCRLRW+NYLRPNIKRGNISDQEEDLILRLHKLLG
Sbjct: 79  FFFA--------------GLNRCGKSCRLRWMNYLRPNIKRGNISDQEEDLILRLHKLLG 138

Query: 152 NRWSLIAGRLPGRTDNEIKNYWNSHLSKKMNQQSEK-ERRKGCKRKVNT---------ES 211
           NRWSLIAGRLPGRTDNEIKNYWNSHLSKK+ Q+ +     +GC +   T         E 
Sbjct: 139 NRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQEKQSGGSTRGCSKLQRTRVVEEVNVVEV 198

Query: 212 REEETSQERENSSNLEYDVDNLFDFSNEGP-DLEWMSNFL 224
           + E+TS   +  S + ++VD  FDFS EGP +LEW+S FL
Sbjct: 199 KREDTSNGGDQCSKMNFNVDEFFDFSEEGPLNLEWVSQFL 224

The following BLAST results are available for this feature:

BLAST of Cucsa.340790.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MYB32_ARATH	3.0e-39	46.32	Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1	[more]
MYBC_MAIZE	2.9e-37	57.14	Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1	[more]
WER_ARATH	4.9e-37	43.08	Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1	[more]
MYB5_ARATH	2.4e-36	49.38	Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1	[more]
MYB23_ARATH	1.2e-35	54.96	Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1	[more]

BLAST of Cucsa.340790.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061GJK0_THECC	5.7e-61	64.50	Myb domain protein 23 OS=Theobroma cacao GN=TCM_029126 PE=4 SV=1	[more]
A5BR18_VITVI	5.4e-59	56.82	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029986 PE=4 SV=1	[more]
M5WVH0_PRUPE	5.4e-59	54.18	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024533mg PE=4 SV=1	[more]
A0A067KX10_JATCU	1.0e-57	59.71	MYB family protein OS=Jatropha curcas GN=JCGZ_24705 PE=4 SV=1	[more]
U5GIF8_POPTR	1.7e-57	62.19	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s06320g PE=4 SV=1	[more]

BLAST of Cucsa.340790.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34990.1	1.7e-40	46.32	myb domain protein 32	[more]
AT5G14750.1	2.7e-38	43.08	myb domain protein 66	[more]
AT3G13540.1	1.4e-37	49.38	myb domain protein 5	[more]
AT5G40330.1	6.7e-37	54.96	myb domain protein 23	[more]
AT5G35550.1	8.8e-37	48.73	Duplicated homeodomain-like superfamily protein	[more]

BLAST of Cucsa.340790.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778686120\|ref\|XP_011652333.1\|	1.5e-126	100.00	PREDICTED: transcription factor WER-like isoform X1 [Cucumis sativus]	[more]
gi\|659128004\|ref\|XP_008464000.1\|	7.9e-104	87.44	PREDICTED: transcription factor MYB114-like [Cucumis melo]	[more]
gi\|590620738\|ref\|XP_007024617.1\|	8.2e-61	64.50	Myb domain protein 23 [Theobroma cacao]	[more]
gi\|470140025\|ref\|XP_004305745.1\|	3.5e-59	53.10	PREDICTED: transcription factor WER-like [Fragaria vesca subsp. vesca]	[more]
gi\|147832539\|emb\|CAN74896.1\|	7.7e-59	56.82	hypothetical protein VITISV_029986 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.340790	Cucsa.340790	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.340790.1	Cucsa.340790.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.340790.1.five_prime_UTR.1	Cucsa.340790.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.340790.1.CDS.1	Cucsa.340790.1.CDS.1	CDS
Cucsa.340790.1.CDS.2	Cucsa.340790.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.340790.1.three_prime_UTR.1	Cucsa.340790.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 34..65 score: 3.8E-10coord: 115..160 score: 2.0
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 33..111 score: 2.9E-13coord: 114..162 score: 1.9
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 117..165 score: 3.4E-25coord: 35..116 score: 3.7
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 30..65 score: 6.32E-8coord: 95..168 score: 8.13
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 110..164 score: 25.186coord: 29..109 score: 11
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 10..65 score: 4.3E-89coord: 94..214 score: 4.3
None	No IPR available	PANTHER	PTHR10641:SF580	SUBFAMILY NOT NAMED	coord: 10..65 score: 4.3E-89coord: 94..214 score: 4.3