Cucsa.334730.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACGACGACCCTTGGCTCCAGCAAAGTTTGAAGCTTGGAAAATGTGGCATGAAGATGGTCTTTCAATACAGAAAATTGCTGTAAGTATTTTGTTTTTTTGACTTTTTGAAGTTATTGAGAGAAAAAGGCTTATGAAGATGAACATAACAGAATGGCAATTTAGAAGCTTATTCACATGGAACTTCACCCTTGTATATAAATAAGTCTGAAAAAAAACACTTTGAATCAGTTTAGACTGCAAATATTTCAACTCTGGAATGCTCAGAATTTAAATACTTTTCACCTGAAAGAAGTTTACTTGCTGAAAAAACAAACTTCTTGAGTTGTTTTGGCTTTTCAGAGTTACGGTCTTTTTTTTAGAAGCACAGTGTGTTTAGAATTTTTGAAATCACATCTGTTTATTGTAAATCAAACACCATATGACTTTTGAACAATGCTTTTAATTGGAAATGAAATGCACTTTTTACCATTCTAGAAATTATATTAGCCTCGCCCTTACCATGTTCAGTGCATGTCTGGAGTGATATTGAAATTGCTAAAATCACTATTAGCATGTTCAAAATCAATATGAAACTCGCCTTGAAGCATGATAAATCGATTTATTGTTTAATTCTACACTCTTGAATTCAATCTTTTATATTATCAAAACTGATTTGAATGATTAAAAGAACATGTTTTAGAGTGAGTTTGAAAATAACAATGATTTTAACCAATTTAAAATCACTCATTTTATGTTAAACGTTGGCAGATATTTCTCTTTTCCCATTAATTGGCCTTATTCTGATATATCATTATTTATTTTGAAAATAGAACTTCCCTGGTAGATTGGCACCTATCAAAGAAACTACTGTTTTTGGGTATATTGTTGATGCAGTCCAGGAAGGATATGAAATCGACTGGACCAAGTTTTGTGATGAGATAGGACTTACATGTCAGATATTCTCCGACATTCAATCTGCTGTCACAAAGGTTGGATCTGCTGAGAAGTTGAAGGCGATAAAAGATGAATTACCAGAAGAAGTAAGTTGGATATTGTAAAATATGCCTTCTGTTTCTTAGACTTTAGTCCTCCATTGTTTCTTTTATGCATATACTTTTCAGTTTTTCAGTCTAATGCTCCATCGTCTGTATATGACTGGAAATTGATATTTGGATGACAGATAAATTATGCTCACATCAAGGCTTGTCTGGTAATGCAAAGTCGTGGAATGTCCCCGGAAGGCCTGGATAGAAAAACCGACGAACCAATGACTGGTGCATCAGTGCTTTCAGGGAGTCCAACTTCGATTCAGAAGAAAGAAGAGCCTTGTGTAATTGAAACACCATCAAATGGAGAAGAGGAAATTTCCGTTTCGTTAAAGCGCCAGAAAGTTTGTGAATTGGAGGAAGAACATCGGGTTCCGATAAAAGCAACCGAGAGCTTGCTAGTAGAGTGGCTGAAGAACAATGATGGGGTAAGTGAAATGAAGTCTGAAATATGTATCATTTTTTGCTTCTTATACTAATCTTTCCAAGCGCTCTTTGAAGTTCACCATAGTATGGTTTAAATGAAGAAGAATGCAATATGGCTTTTTGATAATGCAGGTAACACTTGACAATATGATGAAGCAGTTTAAACTTAAAGGATGTGAAGAAGAATCTCTAGTTGCTTTGCTTAATTCCCTTGAAGGCGATTTTGTGATATATAAAAAGAACAATATCTATAAGCTCATGTAAGCTCTAAAGCGTAACTATAAAACTCCCTAATTTTGTGTATAGGAATTTGGGAATAGGATTAAACCAAATCCAAGGTATTGGCGCATTCATTTGCCAGC AACGACGACCCTTGGCTCCAGCAAAGTTTGAAGCTTGGAAAATGTGGCATGAAGATGGTCTTTCAATACAGAAAATTGCTAACTTCCCTGGTAGATTGGCACCTATCAAAGAAACTACTGTTTTTGGGTATATTGTTGATGCAGTCCAGGAAGGATATGAAATCGACTGGACCAAGTTTTGTGATGAGATAGGACTTACATGTCAGATATTCTCCGACATTCAATCTGCTGTCACAAAGGTTGGATCTGCTGAGAAGTTGAAGGCGATAAAAGATGAATTACCAGAAGAAATAAATTATGCTCACATCAAGGCTTGTCTGGTAATGCAAAGTCGTGGAATGTCCCCGGAAGGCCTGGATAGAAAAACCGACGAACCAATGACTGGTGCATCAGTGCTTTCAGGGAGTCCAACTTCGATTCAGAAGAAAGAAGAGCCTTGTGTAATTGAAACACCATCAAATGGAGAAGAGGAAATTTCCGTTTCGTTAAAGCGCCAGAAAGTTTGTGAATTGGAGGAAGAACATCGGGTTCCGATAAAAGCAACCGAGAGCTTGCTAGTAGAGTGGCTGAAGAACAATGATGGGGTAACACTTGACAATATGATGAAGCAGTTTAAACTTAAAGGATGTGAAGAAGAATCTCTAGTTGCTTTGCTTAATTCCCTTGAAGGCGATTTTGTGATATATAAAAAGAACAATATCTATAAGCTCATGTAAGCTCTAAAGCGTAACTATAAAACTCCCTAATTTTGTGTATAGGAATTTGGGAATAGGATTAAACCAAATCCAAGGTATTGGCGCATTCATTTGCCAGC CGACGACCCTTGGCTCCAGCAAAGTTTGAAGCTTGGAAAATGTGGCATGAAGATGGTCTTTCAATACAGAAAATTGCTAACTTCCCTGGTAGATTGGCACCTATCAAAGAAACTACTGTTTTTGGGTATATTGTTGATGCAGTCCAGGAAGGATATGAAATCGACTGGACCAAGTTTTGTGATGAGATAGGACTTACATGTCAGATATTCTCCGACATTCAATCTGCTGTCACAAAGGTTGGATCTGCTGAGAAGTTGAAGGCGATAAAAGATGAATTACCAGAAGAAATAAATTATGCTCACATCAAGGCTTGTCTGGTAATGCAAAGTCGTGGAATGTCCCCGGAAGGCCTGGATAGAAAAACCGACGAACCAATGACTGGTGCATCAGTGCTTTCAGGGAGTCCAACTTCGATTCAGAAGAAAGAAGAGCCTTGTGTAATTGAAACACCATCAAATGGAGAAGAGGAAATTTCCGTTTCGTTAAAGCGCCAGAAAGTTTGTGAATTGGAGGAAGAACATCGGGTTCCGATAAAAGCAACCGAGAGCTTGCTAGTAGAGTGGCTGAAGAACAATGATGGGGTAACACTTGACAATATGATGAAGCAGTTTAAACTTAAAGGATGTGAAGAAGAATCTCTAGTTGCTTTGCTTAATTCCCTTGAAGGCGATTTTGTGATATATAAAAAGAACAATATCTATAAGCTCATGTAA RRPLAPAKFEAWKMWHEDGLSIQKIANFPGRLAPIKETTVFGYIVDAVQEGYEIDWTKFCDEIGLTCQIFSDIQSAVTKVGSAEKLKAIKDELPEEINYAHIKACLVMQSRGMSPEGLDRKTDEPMTGASVLSGSPTSIQKKEEPCVIETPSNGEEEISVSLKRQKVCELEEEHRVPIKATESLLVEWLKNNDGVTLDNMMKQFKLKGCEEESLVALLNSLEGDFVIYKKNNIYKLM*
BLAST of Cucsa.334730.1 vs. TrEMBL
Match: A0A0A0L1A4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G188732 PE=4 SV=1) HSP 1 Score: 479.2 bits (1232), Expect = 3.0e-132 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1
BLAST of Cucsa.334730.1 vs. TrEMBL
Match: M5W6N4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001081mg PE=4 SV=1) HSP 1 Score: 237.3 bits (604), Expect = 2.0e-59 Identity = 131/269 (48.70%), Postives = 166/269 (61.71%), Query Frame = 1
BLAST of Cucsa.334730.1 vs. TrEMBL
Match: W9QXN0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022687 PE=4 SV=1) HSP 1 Score: 229.9 bits (585), Expect = 3.1e-57 Identity = 128/256 (50.00%), Postives = 170/256 (66.41%), Query Frame = 1
BLAST of Cucsa.334730.1 vs. TrEMBL
Match: B9SK67_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1027520 PE=4 SV=1) HSP 1 Score: 223.0 bits (567), Expect = 3.8e-55 Identity = 123/247 (49.80%), Postives = 169/247 (68.42%), Query Frame = 1
BLAST of Cucsa.334730.1 vs. TrEMBL
Match: A0A067LLL8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17267 PE=4 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 2.7e-53 Identity = 117/243 (48.15%), Postives = 165/243 (67.90%), Query Frame = 1
BLAST of Cucsa.334730.1 vs. NCBI nr
Match: gi|778692430|ref|XP_011653463.1| (PREDICTED: ATP-dependent DNA helicase Q-like SIM [Cucumis sativus]) HSP 1 Score: 479.2 bits (1232), Expect = 4.3e-132 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1
BLAST of Cucsa.334730.1 vs. NCBI nr
Match: gi|700198758|gb|KGN53916.1| (hypothetical protein Csa_4G188732 [Cucumis sativus]) HSP 1 Score: 479.2 bits (1232), Expect = 4.3e-132 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1
BLAST of Cucsa.334730.1 vs. NCBI nr
Match: gi|659082754|ref|XP_008442015.1| (PREDICTED: Werner syndrome ATP-dependent helicase homolog isoform X1 [Cucumis melo]) HSP 1 Score: 434.1 bits (1115), Expect = 1.6e-118 Identity = 218/237 (91.98%), Postives = 227/237 (95.78%), Query Frame = 1
BLAST of Cucsa.334730.1 vs. NCBI nr
Match: gi|659082756|ref|XP_008442016.1| (PREDICTED: Werner syndrome ATP-dependent helicase homolog isoform X2 [Cucumis melo]) HSP 1 Score: 434.1 bits (1115), Expect = 1.6e-118 Identity = 218/237 (91.98%), Postives = 227/237 (95.78%), Query Frame = 1
BLAST of Cucsa.334730.1 vs. NCBI nr
Match: gi|645215808|ref|XP_008218164.1| (PREDICTED: Werner syndrome ATP-dependent helicase-like [Prunus mume]) HSP 1 Score: 237.7 bits (605), Expect = 2.2e-59 Identity = 129/269 (47.96%), Postives = 169/269 (62.83%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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