Cucsa.322300.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.322300.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	ABC-type Co2+ transport system, permease component
Location	scaffold03080 : 2069787 .. 2071786 (+)
Sequence length	932

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGTCCGTCTCTGCTTCGCATAGTGAATACAAGATGTAAGAGACGAGTCGACTGTATTTCAGTTTCATAGACAAACCTTAATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATTACTCCGCATTAAGGTACTCTTCTCATTTCGCTTCCCCATTGCAACATTTCTTTGAGTTCTGTAACAACCTTTTCTACTATAACTACTTCAAATTATACCTAAACGATGAAGTATTCCTGAATCCGAACTGTTTATCAATGGATTATCCATAAGTTCATCAATCAACAATCGATTTCTTAAAGATTAGGAGTTAGGATTTACTTTATCAGGGATACTTGTTAAACCTAGAACGATCCATTGATCCATTCCAATGACTACTACTTGAATTATAATGAAACGGAAGAAGACGAAGGATTCTTTAATCTGAACTATTCATCAATGGAATTTCAGTTTTGATTAGTAGTTAGGATTTAAGATGGATATCAGTAAAACCTAGCGCAGTTCATCGATTCAGTTCGATGATAACTACTTGAACGTTGAATTATATTGAAATGGAAGGAAGACGAAGGATTTTTCAAAATATCTGAACTATTGATTTTCCATTTCGATTACTTTACGAACACTAGGAGTTAAAAGGATAGTTTTGATGAACAATTGATTGTAAGAATAAAACAAGTGGTCTACTTTTATGGGGAGTAGTTTATAGTTGTTCGAGAATTGTGAGGGTGGGTGAAGAAAACAATTGTTGTTGTTGGGAAAGTTCCACAAAAGATTCTATGACTTTGGTTTGAAGTTGTCTAACTGGAATTAAATTTATTCTCTAGTTTGAGACATGTTTGCGTAGGTATTAACTTCGAATGTGTTGGGTGCTCTTTGTGAAACCTACCTCGGGCATCAAGATTTCTTTTTCCATAATTTCTAAGAAAGAGTGATAATTCCTCCAAGAAGATAAAAGAATTTACTACACCTAAACGCAAAAGAATATTGGTTTGACTGTTTGAGAGTGCGAAAACATGCGTGAATGAATGTTGCTTTTAATTATTTTTATGTAGGCTTTGGTTTTCTTCAATTTTAAAGTTTTTCACGTGTGTATCCTAGTTTCTTAAATTTTTTATGTGGCTGTAGTGAGGTTTTTTACCAAGTAGGATTGATATTTATTAAACTTAGAACGACTCGTTGATTATTTTTATTTTCTCAGCAGAAAAATTGTAAATTCTCACTTCATATAAAAAGCAACGAAAGAAACTGTTTCCCAAATTTAAGACCAACCATTAACCAAAACCAAAACCAAACTCACACGAACCGCCCCACAAGTCTAAATGCAACATTGAGGCGTCCGAAGGGATTCGGACCAGCTTCAAGGAAGAAGAAGACGAAGAAAACAAGAAGAGAAGGAAGTGAGGATGATGACAACGAGGAGGAGGAAGAGGAAGACGAGGAGGAGGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAATAGGATGATGAGTAGAATGGGATTTACAGTGGGGATTCCATTGTTTATAGGGCTATTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTCATAGTCTCATTCTTCTTCTTTGGTTCAGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTTTGAGGGAAGGCTCTTTATTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGAAGTCCATTTGGGGTGGATCTAATAAGAAATAGATGAATTGCCTTTTTATCTTCTTCCTTTTTTTTTttCTTTCTTTCTTATGTTCTTCTTCGATAAATATTATAGTTTCTTAGGAGTGACGTGAGAAGCAAAAaCGAGTATAGTTCAACTAGCATATTGTATTTGTTGGCAATCAAGAAGTTCGTAGTTCGTCAAGTTGAGTTTTAGCTCAATAGTAATCAATAATAGTCTTCGAAGTTTA

mRNA sequence

GGCGTCCGTCTCTGCTTCGCATAGTGAATACAAGATGTAAGAGACGAGTCGACTGTATTTCAGTTTCATAGACAAACCTTAATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATTACTCCGCATTAAGAAAAATTGTAAATTCTCACTTCATATAAAAAGCAACGAAAGAAACTGTTTCCCAAATTTAAGACCAACCATTAACCAAAACCAAAACCAAACTCACACGAACCGCCCCACAAGTCTAAATGCAACATTGAGGCGTCCGAAGGGATTCGGACCAGCTTCAAGGAAGAAGAAGACGAAGAAAACAAGAAGAGAAGGAAGTGAGGATGATGACAACgaggaggaggaagaggaagacgaggaggaggaagaggaAGGTGGTGTAATACCAGAAGTAGTGACAAATAGGATGATGAGTAGAATGGGATTTACAGTGGGGATTCCATTGTTTATAGGGCTATTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTCATAGTCTCATTCTTCTTCTTTGGTTCAGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTTTGAGGGAAGGCTCTTTATTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGAAGTCCATTTGGGGTGGATCTAATAAGAAATAGATGAATTGCCTTTTTATCttcttcctttttttttttctttctttcttATGTTCTTCTTCGATAAATATTATAGTTTCTTAGGAGTGACGTGAGAAGCAAAAACGAGTATAGTTCAACTAGCATATTGTATTTGTTGGCAATCAAGAAGTTCGTAGTTCGTCAAGTTGAGTTTTAGCTCAATAGTAATCAATAATAGTCTTCGAAGTTTA

Coding sequence (CDS)

ATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATTACTCCGCATTAAGAAAAATTGTAAATTCTCACTTCATATAAAAAGCAACGAAAGAAACTGTTTCCCAAATTTAAGACCAACCATTAACCAAAACCAAAACCAAACTCACACGAACCGCCCCACAAGTCTAAATGCAACATTGAGGCGTCCGAAGGGATTCGGACCAGCTTCAAGGAAGAAGAAGACGAAGAAAACAAGAAGAGAAGGAAGTGAGGATGATGACAACGAGGAGGAGGAAGAGGAAGACGAGGAGGAGGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAATAGGATGATGAGTAGAATGGGATTTACAGTGGGGATTCCATTGTTTATAGGGCTATTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTCATAGTCTCATTCTTCTTCTTTGGTTCAGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTTTGAGGGAAGGCTCTTTATTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGAAGTCCATTTGGGGTGGATCTAATAAGAAATAG

Protein sequence

MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPTSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK*

Homology

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BLAST of Cucsa.322300.2 vs. Swiss-Prot
Match: PAM68_ARATH (Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.1e-65
Identity = 115/165 (69.70%), Postives = 138/165 (83.64%), Query Frame = 1


Query: 52  NQTHTNRPTSLNATLRRPKGFGPASRKKKTKKTRREGS---EDDDNEEEEEEDEEEEEEG 111
           N+   +R   L+AT+  PKGFGP  +K K  K  + G+   EDDD+E+E+++DEE+E E 
Sbjct: 50  NRLEISRIAPLHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERER 109

Query: 112 GVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSA 171
           GVIPE+VTNRM+SRMGFTVG+PLFIGLLFFPFFYYLKVGLK+DVP+WVP IVSF FFG+A
Sbjct: 110 GVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTA 169

Query: 172 LLGVSYGIVSSSWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           L GVSYGIVSSSWDPLREGSLLGWNEA+KNWPVFW+S W  S+K+
Sbjct: 170 LAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

[Close]

BLAST of Cucsa.322300.2 vs. Swiss-Prot
Match: Y5278_ARATH (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.9e-16
Identity = 47/147 (31.97%), Postives = 74/147 (50.34%), Query Frame = 1


Query: 60  TSLNATLRRPKGFGPASRKKKTKKTRR--EGSEDDDNEEEEEEDEEEEEEGGVIPEVVTN 119
           T++      PK   P ++ +   K     +G +     E+    + + E+   IP+ V  
Sbjct: 19  TTVKTKSHNPKTLYPNNKPRWESKLHAGPKGFQSSRTSEKPGRPDPDPEDDPPIPQEVFE 78

Query: 120 RMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIV 179
           RMM R+  +VG PL +G+        LK     DVP WVP + +   FGS+ LG++YG +
Sbjct: 79  RMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSL 138

Query: 180 SSSWDPLREGSLLGWNEAQKNWPVFWK 205
           S++ DP +  SL G  EA++NW   WK
Sbjct: 139 STNLDPAKTNSLFGLKEAKENWVEMWK 165

[Close]

BLAST of Cucsa.322300.2 vs. TrEMBL
Match: A0A0A0L507_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006590 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 4.7e-121
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60
           MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60

Query: 61  SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMM 120
           SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMM
Sbjct: 61  SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMM 120

Query: 121 SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180
           SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS
Sbjct: 121 SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180

Query: 181 WDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           WDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK
Sbjct: 181 WDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 213

[Close]

BLAST of Cucsa.322300.2 vs. TrEMBL
Match: A0A022RB86_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014159mg PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 8.7e-67
Identity = 132/205 (64.39%), Postives = 157/205 (76.59%), Query Frame = 1


Query: 10  LPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQ-NQTHTNRPTSLNATLRR 69
           LPL P   P L + KN           R  FP L+PT+++NQ   TH N    ++ATL  
Sbjct: 12  LPLLP---PSLTLTKN-----------RTQFPILKPTLSKNQIKSTHFNL---VSATLNS 71

Query: 70  PKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMMSRMGFTVG 129
           PKGFGP  +K +  K  ++  E +D EEEEEED+++ EE  VIPE+VTNRMMSR+G +VG
Sbjct: 72  PKGFGPTPKKVRISKKSKKNYESEDEEEEEEEDDDDREED-VIPEIVTNRMMSRIGLSVG 131

Query: 130 IPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPLREGS 189
           IPLF+GLLFFPFFYYLKVGLKID+P+WVP IVSF FFG+ALLGVSYGIVS+SWDPLREGS
Sbjct: 132 IPLFVGLLFFPFFYYLKVGLKIDIPTWVPFIVSFVFFGTALLGVSYGIVSASWDPLREGS 191

Query: 190 LLGWNEAQKNWPVFWKSIWGGSNKK 214
           LLGWNEA+KNWPVFW+SIWGGSNKK
Sbjct: 192 LLGWNEAKKNWPVFWQSIWGGSNKK 198

[Close]

BLAST of Cucsa.322300.2 vs. TrEMBL
Match: A0A068V2P5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042427001 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.1e-64
Identity = 119/173 (68.79%), Postives = 145/173 (83.82%), Query Frame = 1


Query: 41  PNLRPTINQNQNQTHTNRPTSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEE 100
           P L PT    +NQ+   + TS++ATL  P+GFGP+   KK KKT+    + D+ E+++++
Sbjct: 30  PILTPTY---RNQSRQPQFTSISATLNTPRGFGPSP--KKAKKTKTPKKDYDEEEDDDDD 89

Query: 101 DEEEEEEGGVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIV 160
           +EEE+ E G+IPE+VTNRMMSRMGF+VG+PLFIGLLFFPFFYYLKVGLKIDVP+W+P IV
Sbjct: 90  EEEEDREEGIIPEIVTNRMMSRMGFSVGVPLFIGLLFFPFFYYLKVGLKIDVPTWIPFIV 149

Query: 161 SFFFFGSALLGVSYGIVSSSWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           SF FFG+ALLGVSYGIVSSSWDPLREGS LGWNEAQKNWPVFW+SIWGG +KK
Sbjct: 150 SFIFFGTALLGVSYGIVSSSWDPLREGSFLGWNEAQKNWPVFWQSIWGGGSKK 197

[Close]

BLAST of Cucsa.322300.2 vs. TrEMBL
Match: A0A0D2R6P9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G178900 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.8e-64
Identity = 120/164 (73.17%), Postives = 138/164 (84.15%), Query Frame = 1


Query: 51  QNQTHTNRPTSLNATLRRPKGFG-PASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGG 110
           QNQ        ++ATL  PKGFG P  + KKTKK++  G ++++ EEEEEE+EE E E G
Sbjct: 44  QNQIRPLYLLPIHATLNSPKGFGSPPKKNKKTKKSKSGGDDNEEEEEEEEEEEENEAEAG 103

Query: 111 VIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSAL 170
           VIPEVVTNRM+SRMGFTVGIPL +GLLFFPFFYYLKV LKIDVP+WVP IVSF FFG+AL
Sbjct: 104 VIPEVVTNRMISRMGFTVGIPLLVGLLFFPFFYYLKVELKIDVPTWVPFIVSFIFFGTAL 163

Query: 171 LGVSYGIVSSSWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           LGVSYGIVSSSWDPLREGS+LGWNEAQKNWPVFW+SIWGG ++K
Sbjct: 164 LGVSYGIVSSSWDPLREGSVLGWNEAQKNWPVFWQSIWGGGSRK 207

[Close]

BLAST of Cucsa.322300.2 vs. TrEMBL
Match: A0A0D2MZZ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G178900 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.8e-64
Identity = 120/164 (73.17%), Postives = 138/164 (84.15%), Query Frame = 1


Query: 51  QNQTHTNRPTSLNATLRRPKGFG-PASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGG 110
           QNQ        ++ATL  PKGFG P  + KKTKK++  G ++++ EEEEEE+EE E E G
Sbjct: 23  QNQIRPLYLLPIHATLNSPKGFGSPPKKNKKTKKSKSGGDDNEEEEEEEEEEEENEAEAG 82

Query: 111 VIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSAL 170
           VIPEVVTNRM+SRMGFTVGIPL +GLLFFPFFYYLKV LKIDVP+WVP IVSF FFG+AL
Sbjct: 83  VIPEVVTNRMISRMGFTVGIPLLVGLLFFPFFYYLKVELKIDVPTWVPFIVSFIFFGTAL 142

Query: 171 LGVSYGIVSSSWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           LGVSYGIVSSSWDPLREGS+LGWNEAQKNWPVFW+SIWGG ++K
Sbjct: 143 LGVSYGIVSSSWDPLREGSVLGWNEAQKNWPVFWQSIWGGGSRK 186

[Close]

BLAST of Cucsa.322300.2 vs. TAIR10
Match: AT4G19100.1 (AT4G19100.1 Protein of unknown function (DUF3464))

HSP 1 Score: 249.6 bits (636), Expect = 1.7e-66
Identity = 115/165 (69.70%), Postives = 138/165 (83.64%), Query Frame = 1


Query: 52  NQTHTNRPTSLNATLRRPKGFGPASRKKKTKKTRREGS---EDDDNEEEEEEDEEEEEEG 111
           N+   +R   L+AT+  PKGFGP  +K K  K  + G+   EDDD+E+E+++DEE+E E 
Sbjct: 50  NRLEISRIAPLHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERER 109

Query: 112 GVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSA 171
           GVIPE+VTNRM+SRMGFTVG+PLFIGLLFFPFFYYLKVGLK+DVP+WVP IVSF FFG+A
Sbjct: 110 GVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTA 169

Query: 172 LLGVSYGIVSSSWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           L GVSYGIVSSSWDPLREGSLLGWNEA+KNWPVFW+S W  S+K+
Sbjct: 170 LAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

[Close]

BLAST of Cucsa.322300.2 vs. TAIR10
Match: AT5G52780.1 (AT5G52780.1 Protein of unknown function (DUF3464))

HSP 1 Score: 85.9 bits (211), Expect = 3.3e-17
Identity = 47/147 (31.97%), Postives = 74/147 (50.34%), Query Frame = 1


Query: 60  TSLNATLRRPKGFGPASRKKKTKKTRR--EGSEDDDNEEEEEEDEEEEEEGGVIPEVVTN 119
           T++      PK   P ++ +   K     +G +     E+    + + E+   IP+ V  
Sbjct: 19  TTVKTKSHNPKTLYPNNKPRWESKLHAGPKGFQSSRTSEKPGRPDPDPEDDPPIPQEVFE 78

Query: 120 RMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIV 179
           RMM R+  +VG PL +G+        LK     DVP WVP + +   FGS+ LG++YG +
Sbjct: 79  RMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSL 138

Query: 180 SSSWDPLREGSLLGWNEAQKNWPVFWK 205
           S++ DP +  SL G  EA++NW   WK
Sbjct: 139 STNLDPAKTNSLFGLKEAKENWVEMWK 165

[Close]

BLAST of Cucsa.322300.2 vs. NCBI nr
Match: gi|449456765|ref|XP_004146119.1| (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 441.8 bits (1135), Expect = 6.8e-121
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60
           MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60

Query: 61  SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMM 120
           SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMM
Sbjct: 61  SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMM 120

Query: 121 SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180
           SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS
Sbjct: 121 SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180

Query: 181 WDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           WDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK
Sbjct: 181 WDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 213

[Close]

BLAST of Cucsa.322300.2 vs. NCBI nr
Match: gi|778674883|ref|XP_011650314.1| (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 437.2 bits (1123), Expect = 1.7e-119
Identity = 213/214 (99.53%), Postives = 213/214 (99.53%), Query Frame = 1


Query: 1   MAAIAGSLNLPLAPSNLPLLRIK-KNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRP 60
           MAAIAGSLNLPLAPSNLPLLRIK KNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRP
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRP 60

Query: 61  TSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRM 120
           TSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRM
Sbjct: 61  TSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRM 120

Query: 121 MSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS 180
           MSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS
Sbjct: 121 MSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS 180

Query: 181 SWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           SWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK
Sbjct: 181 SWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 214

[Close]

BLAST of Cucsa.322300.2 vs. NCBI nr
Match: gi|659095484|ref|XP_008448605.1| (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 397.9 bits (1021), Expect = 1.1e-107
Identity = 195/218 (89.45%), Postives = 202/218 (92.66%), Query Frame = 1


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60
           MAAIAGSLNLPLAPSNLPLLRIKKNC+FS+HIKS ERNCFPN RPTI  NQNQT TN PT
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCEFSIHIKSYERNCFPNFRPTI--NQNQTRTNHPT 60

Query: 61  SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEE-----EEEEGGVIPEVV 120
           SLNATLRRPKGFGPA RKKK KKT+ EG EDDDN+E+EEED E     EEEEGGVIPEVV
Sbjct: 61  SLNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVV 120

Query: 121 TNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG 180
           TNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG
Sbjct: 121 TNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG 180

Query: 181 IVSSSWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           IVSSSWDP+REGSLLGWNEAQKNWPVFW+SIWGGSNKK
Sbjct: 181 IVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 216

[Close]

BLAST of Cucsa.322300.2 vs. NCBI nr
Match: gi|659095482|ref|XP_008448604.1| (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 393.3 bits (1009), Expect = 2.8e-106
Identity = 195/219 (89.04%), Postives = 202/219 (92.24%), Query Frame = 1


Query: 1   MAAIAGSLNLPLAPSNLPLLRIK-KNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRP 60
           MAAIAGSLNLPLAPSNLPLLRIK KNC+FS+HIKS ERNCFPN RPTINQNQ  T TN P
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCEFSIHIKSYERNCFPNFRPTINQNQ--TRTNHP 60

Query: 61  TSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEE-----EEEEGGVIPEV 120
           TSLNATLRRPKGFGPA RKKK KKT+ EG EDDDN+E+EEED E     EEEEGGVIPEV
Sbjct: 61  TSLNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEV 120

Query: 121 VTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSY 180
           VTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSY
Sbjct: 121 VTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSY 180

Query: 181 GIVSSSWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           GIVSSSWDP+REGSLLGWNEAQKNWPVFW+SIWGGSNKK
Sbjct: 181 GIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217

[Close]

BLAST of Cucsa.322300.2 vs. NCBI nr
Match: gi|747089912|ref|XP_011092614.1| (PREDICTED: protein PAM68, chloroplastic [Sesamum indicum])

HSP 1 Score: 263.5 bits (672), Expect = 3.3e-67
Identity = 128/175 (73.14%), Postives = 145/175 (82.86%), Query Frame = 1


Query: 41  PNLRPTINQNQNQTHTNRPTSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEE 100
           P+L P ++ NQ   H    T L+ATL  PKGFGP  +K K  K  ++  E D+ EEEEEE
Sbjct: 28  PSLSPILSNNQ--FHLIHITPLSATLNSPKGFGPTPKKVKKSKKSKKNYESDEEEEEEEE 87

Query: 101 DEEEEE--EGGVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPV 160
           +EEEE+  E GVIPEVVTNRM+SRMGF+VGIPLFIGLLFFPFFYYLKVGLKIDVP+WVP 
Sbjct: 88  EEEEEDDREEGVIPEVVTNRMISRMGFSVGIPLFIGLLFFPFFYYLKVGLKIDVPTWVPF 147

Query: 161 IVSFFFFGSALLGVSYGIVSSSWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           IVSF FFG+ALLGVSYGIVS+SWDP+REGSLLGWNEAQKNWPVFW+SIWGGS KK
Sbjct: 148 IVSFIFFGTALLGVSYGIVSASWDPMREGSLLGWNEAQKNWPVFWQSIWGGSKKK 200

The following BLAST results are available for this feature:

BLAST of Cucsa.322300.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PAM68_ARATH	3.1e-65	69.70	Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1	[more]
Y5278_ARATH	5.9e-16	31.97	Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=...	[more]

BLAST of Cucsa.322300.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L507_CUCSA	4.7e-121	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006590 PE=4 SV=1	[more]
A0A022RB86_ERYGU	8.7e-67	64.39	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014159mg PE=4 SV=1	[more]
A0A068V2P5_COFCA	1.1e-64	68.79	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042427001 PE=4 SV=1	[more]
A0A0D2R6P9_GOSRA	1.8e-64	73.17	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G178900 PE=4 SV=1	[more]
A0A0D2MZZ6_GOSRA	1.8e-64	73.17	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G178900 PE=4 SV=1	[more]

BLAST of Cucsa.322300.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19100.1	1.7e-66	69.70	Protein of unknown function (DUF3464)	[more]
AT5G52780.1	3.3e-17	31.97	Protein of unknown function (DUF3464)	[more]

BLAST of Cucsa.322300.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456765\|ref\|XP_004146119.1\|	6.8e-121	100.00	PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis sativus]	[more]
gi\|778674883\|ref\|XP_011650314.1\|	1.7e-119	99.53	PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis sativus]	[more]
gi\|659095484\|ref\|XP_008448605.1\|	1.1e-107	89.45	PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo]	[more]
gi\|659095482\|ref\|XP_008448604.1\|	2.8e-106	89.04	PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo]	[more]
gi\|747089912\|ref\|XP_011092614.1\|	3.3e-67	73.14	PREDICTED: protein PAM68, chloroplastic [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR021855	PAM68-like

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.322300	Cucsa.322300	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.322300.2	Cucsa.322300.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.322300.2.five_prime_UTR.1	Cucsa.322300.2.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.322300.2.CDS.1	Cucsa.322300.2.CDS.1	CDS
Cucsa.322300.2.CDS.2	Cucsa.322300.2.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.322300.2.three_prime_UTR.1	Cucsa.322300.2.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021855	Protein of unknown function DUF3464	PFAM	PF11947	DUF3464	coord: 65..205 score: 9.4
None	No IPR available	unknown	Coil	Coil	coord: 86..106 scor
None	No IPR available	PANTHER	PTHR34575	FAMILY NOT NAMED	coord: 2..213 score: 7.6
None	No IPR available	PANTHER	PTHR34575:SF2	SUBFAMILY NOT NAMED	coord: 2..213 score: 7.6