Cucsa.320140.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.320140.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Replication factor C subunit 2
Location	scaffold03080 : 38161 .. 43347 (+)
Sequence length	1317

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGCGAAGCGGGAATTGGAAGGGCAAAGTTCTTCTTCCTGAATTCGTTCTACTCTCTCTCGAGCATCCCAATTCATCTGTTCGAACATTCTATGGCGTCTTCTTCAGGCAGCAGTAGCAACTACGACATTCCATGGGTGGAGAAGTACAGGCCCAACAAGGTCACCGACATTGTGGGTAATGAAGATGCAGTTTCTCGTCTCCAAGTCATTGCTCGGGACGGCAACATGCCCAATCTCATATTATCTGTACTCTTCTCCATCTCTAATATTTTCCGTAATTTTCCCTCTTTAGTTTGCATTGCACCAATTGGGTTTCTGTTAATTTTTAGTCTGACTACTAACTTGTTTACAATTGGTACTGAAAATGGACTTGTGTATCTAGAGCTATGTGAAGTAGAAAATCATGCAGCTTGAACGTTTTCTTAATGGCTTTGGGGGTTTGGGAACTAGTAAGGCTCGAATTTTATCCTAATTTTTGTTATCATTTTTGGCGGGGTTTTAATGTTCTGTAATCAAATGCACAATTTTTTTTCTAAAAGGGGTTGATGCAAGTGACAAGTAAAAGGCTCTATAAGTGCTAATTTACGTTGTTGATGGTTTTTTTTTAATGTACTGCAGCTTGAATTTTGTTGCTATGATGAGGTTTTTGATGAAATGTTGTAGGGTTAGACAGTTTTGGTAGGAACATGTATTGCTATGGATTTTAATGTATGTTGTTGCTACATGTTTGTTTTCTAGGGTCCGCCAGGAACTGGGAAGACAACCAGTATTTTGGCTCTTGCTCATGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGTGAGATATTCTATGGTTTTTAAGTCTCAAAATATTTCAAATGTTACTTGATCTGTGTTTTTTtCTAATCTGAGTTCTTGTTTAGGGGAATAGATGTCGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACATTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGGTAGGTTTCAACGGATATAATGCTAGGGAAGCCCAAACACTTTTTTTGGGGAGAGTGTTCTTGTCAGGCATGCATGCGAAAAAAaGTGTCCTATTTTATTTTGTATTTTCTTTTCGGTTTCGAACACTCATGGGACACATAAACCTATAAAATTGATTGAGAATTTGAAACAAGAATTTTCTTTGTCTTCTTTTGCTCTGCTCTTCAGTTTCTTACTTTGAGTCCTGTTATTAATTTGTTACTTTTGGTGGTAATTATGATTGTGAAAATAATCCAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATTTATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTGATTCAGGCAGAAAAGGTATCGTTCGTTTATTTGTCATAATGCCTAGACTACATTTCTGTTGTTATAAATATAGTCATTCTGCTGAATTTAATTGTTATCGAAAACAAAATACTACTTAATTATCTTCGGAAGAAATTATCACTTCAGTGGTAGGCTGCAACAGTTTGTTAGATCTCATGCAATTGATTCATTATGTAATTGGTCTTCCCcCCCcGGGAATGGCTAGGTTGTTAAGGAACTGGTTAAGCAAGTGATATACCCATGGAGTGCACATTTGGAAATGACATAAGCAATCACTAGTTTCTGCCTTGAATTTTTGTTCACTTGAATTAATAATTTGAGAAAGTGGCTCAACTACTGTTGTTGGAGAAATGTGGAAGTCTAGGTTTTGGTTGAATTTCTCTAGAAAGCTCAAGTCTAAAAAAaCCAATCGTATTTTGTGGAGCGAAGAGGTAAATGACATACCCTTGAGGCGTTTCAATAGTTTCATTGATGGAAGTAAGCTGTTTGACCGTCCATTGCTGAATGGGAAGTTTGCGTGGGCTAATTGTATGGCTGCAACTAAGACTGGTAGATTTTTACTTTCAGAAGGTTGGATTAAGAGTTTGGTAGCCCTAGACAGTTGAGGGGGCCAAGATTCACCATCAAATCAACAACTGCTACTCCTCCTTTCAACCCTTCATCTTCATCTTCAGCTCCCAATCTCCTTCTCTTCTCTTTTTTCCTCATCAAAAGGCTCTCGAGGAAATCTAAAAAGAAAGAATTTTTCTAAGATCTTCCAACATTACTTCAAGCAATTTCTGAAGTATTTTATCCGGAAGAAAAAATCAAAGATTATGGAAAAATGTTCCTTAAAAGCCCAGATTTTAGATGATCAAGTACCCGTTTTGCTTGAGGAAAATACTGCCCATTCTATTTCATCAGCTTATTCCAGCAGCTCCAAGCTGTTTGTAGAGACTAATCATGATTTATTGGAAGTCAGTTGCACCCAAATTCAAGCCCCAGCCCGTTCTTCTAGGTCATTTTCTCATCATCCTCACTTTATCCAGTTTAAGTACTCTGAGTTCTCTCTGCCTAACTCCAAGGTTAAATTTCTGAAGGGCTCTCCAAGAAAAACCCCTCACAATCAATCCAACAAGAAGGGTGAGCATTTTTTCAACTCCCCTCTCAGTGTTTGTAGCGAGGAATTGGAGCATTTGGATAGGTAAACCGAACTTGAAAGTTAGAAACATTTGAGCCTCTAGAAACTGATCTCAATGCTCTGTTTCAATGCGAGGAATAGCTAGTATCCGCAAAGTTTCCTTCTGCTACTCGTTCTTGTCCTTGGTCTTGCAAAATACTAGATCATTTAAAATCAATAGTTGCTGATTGTGGATTTATTCTAATTTGATTCTTCAACAGTTTAATGTATTTCTCCTCTATGTAAGACTAACTTCAGTCATTCTTGGATTTCCCTTCATATGGGTGGCAAGTAAATTCTACATGCCGATGCTGAATAGTGAAATACTTTTTCGAGCTTCCTCTAGATTATGGATTAATTTGGTTAGGCAGCTGGTTGCATCTTCTTGAAAGGTTTTAGTTTCAATTTAGTTCTTTATGAGAGAATTTTGCATTATTCTTTGTAATTAGATTTCTTCAGATATGGTTTTGTTGAGCTTGATCTCTTCCTTTTGGAATTTGCATGACAAGTTTTACTTGGTCGTGTGAACATTATGGATAGGCTACTACAGTAGAAGAAGTTTTCGCTTATGAAGCCTTTTTGTTGTGTTCTTTATTGGAAGGCGGAGGAAGACCTATATCACCTTCTTTGGAATTGTTAGTTTGCTAGATCGGTGTGGAACTATTTCTTTCAAGAGTTCCATATTGAGCTAGCTTGCTAGAGAGTTGTTCGGGAGACGATCAAGGAGCTCATTCTTCATATGTCTTTCATTGAGAAATACTGTTTTTTATGGTCAGCTGAGGTGTGTGCTATTCTCTGAGATATTTTGGGGGgAGAGGAATAATGTAGTGTTTAGGGGTGTGTGGAGAGAGACAATAATGATGTTTGGTTTTTGGGGAAGTTTCATGTTTATCTTTAAACTTCGGTCTCAAGTACTTTTTGTAATTAACTCCTGGGTAGCATCTTACTTAGTTGAGAACCCTTTCTTTAGAGGTGTTTTGTTGGTTTTTCTTTTTCTTGTATAATAATCCCCTTTCATGTATTTACTACTTTTTTTATCCCACGTAAATGGTAAACTAAAAAATCTTCAATGCTCTTTAATAATGAAAATAAAAAAGTTCGCTAGTCTGAGGGAAGAGTTGGCTCTCACTGATCTTTTATGGAATGCGAGGGGCTTCAAGTCTCTAGCCAGAAAATTAATGCTAAGTATACTTCTGATTTTGTCATTCTCACCAAAATTAGACAAAAaGGTTAATAGGTTGCTAAGGCTGGAGTTCTAGAAGTGTTGAATGGACTTCTTAAGATGATGTAGGTTCCTTTTGGTAGTATAGTCATTTTTCCTCCCCTCTTTCTTCTTTGGAAGGACTTGCTCTAGATGAAAGGTGTGCTCTTCCTCTATTTTGGTGGTTATCTTAAGGCTAATGGTGTTTGTTGGTGGATTTTAGGCATATGTCTTAGGCCCAGCTAACACGATGAGACAAGTTTTGAAGGGAATTATGTGACTTTCAAGTTATATCACTCAATGAAAGTTGTTTTCTTTTACAACAAAACTATTCTCTTTCAGCACTTCATTGAGTTGATTAAAGAATGATCACGGGTGAATAGCTCTGACTGTATTTTTACTGCGCGGGTCAACAAGTCCTCCCTTTCTTTTATTCCCAATACAAAAGGAATATATTGAGGAAGTATAGTTTTGATTATTGTTTAAAAATATGAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGCTGAATAATTTGCAAGCTACACATAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTCTTGTCACGTGTTTTTATCTTTTTGTATCTTCTATAAACTCAGAAAATGTCATCTTGACATGCTTGTTGATTCTCCAGGTTTGCGATCAACCACATCCGCTGCATGTGAAGAATGTGGTACGCAATGTGCTTGAAGGTAAATTTGATGATGCTTGTACAGGCCTGAGGCAACTCTACGACTTAGGCTATTCCCCCACTGACATAATAACCACTCTTTTCCGAATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGTATTTTAAAACCCGAGGCATCATTTGATCATACCAGGTTAACCAAGTACTCACTCTTTTTGATGAATTGCAGGAAACTGGGTTTGCCCATATGAGAATCTGTGATGGTGTCGGTTCTTACCTTCAACTATGTGGTCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCAAAAGCACCATGAGTAGTCAACATGTAGAGGCTGCTTAAATTTGGCTCACAGGAGGTAGTATGAATGTAAACATCTGTGTTCCTTAGGATATTAACTATATTTTTGTAAGATGTAGTCAGATTGAGCTCAAAATTTATCACGTTACTTACTATATCGTCTTGCTAAAGTTTTAGGCCAATGGCAATCTTGTCAAGGTTTTCCTCCCCACCCCCACCCACCTAGTAATAGGTACAAACAAGCC

mRNA sequence

GGCGCGAAGCGGGAATTGGAAGGGCAAAGTTCTTCTTCCTGAATTCGTTCTACTCTCTCTCGAGCATCCCAATTCATCTGTTCGAACATTCTATGGCGTCTTCTTCAGGCAGCAGTAGCAACTACGACATTCCATGGGTGGAGAAGTACAGGCCCAACAAGGTCACCGACATTGTGGGTAATGAAGATGCAGTTTCTCGTCTCCAAGTCATTGCTCGGGACGGCAACATGCCCAATCTCATATTATCTGGTCCGCCAGGAACTGGGAAGACAACCAGTATTTTGGCTCTTGCTCATGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTCGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACATTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATTTATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTGATTCAGGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGCTGAATAATTTGCAAGCTACACATAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGCGATCAACCACATCCGCTGCATGTGAAGAATGTGGTACGCAATGTGCTTGAAGGTAAATTTGATGATGCTTGTACAGGCCTGAGGCAACTCTACGACTTAGGCTATTCCCCCACTGACATAATAACCACTCTTTTCCGAATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATCTGTGATGGTGTCGGTTCTTACCTTCAACTATGTGGTCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCAAAAGCACCATGAGTAGTCAACATGTAGAGGCTGCTTAAATTTGGCTCACAGGAGGTAGTATGAATGTAAACATCTGTGTTCCTTAGGATATTAACTATATTTTTGTAAGATGTAGTCAGATTGAGCTCAAAATTTATCACGTTACTTACTATATCGTCTTGCTAAAGTTTTAGGCCAATGGCAATCTTGTCAAGGTTTTCCTCCCCACCCCCACCCACCTAGTAATAGGTACAAACAAGCC

Coding sequence (CDS)

ATGGCGTCTTCTTCAGGCAGCAGTAGCAACTACGACATTCCATGGGTGGAGAAGTACAGGCCCAACAAGGTCACCGACATTGTGGGTAATGAAGATGCAGTTTCTCGTCTCCAAGTCATTGCTCGGGACGGCAACATGCCCAATCTCATATTATCTGGTCCGCCAGGAACTGGGAAGACAACCAGTATTTTGGCTCTTGCTCATGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTCGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACATTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATTTATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTGATTCAGGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGCTGAATAATTTGCAAGCTACACATAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGCGATCAACCACATCCGCTGCATGTGAAGAATGTGGTACGCAATGTGCTTGAAGGTAAATTTGATGATGCTTGTACAGGCCTGAGGCAACTCTACGACTTAGGCTATTCCCCCACTGACATAATAACCACTCTTTTCCGAATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATCTGTGATGGTGTCGGTTCTTACCTTCAACTATGTGGTCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCAAAAGCACCATGA

Protein sequence

MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP*

Homology

[Close]

BLAST of Cucsa.320140.1 vs. Swiss-Prot
Match: RFC2_ARATH (Replication factor C subunit 2 OS=Arabidopsis thaliana GN=RFC2 PE=1 SV=1)

HSP 1 Score: 602.1 bits (1551), Expect = 3.8e-171
Identity = 302/333 (90.69%), Postives = 319/333 (95.80%), Query Frame = 1


Query: 1   MASSSGSSSN--YDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60
           MASSS +S+   Y+ PWVEKYRP+KV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG
Sbjct: 1   MASSSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLG NYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180
           EADSMT+GAQQALRRT+EIYSN+TRFALACNTS+KIIEPIQSRCA+VRFSRL+DQ+ILGR
Sbjct: 121 EADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGR 180

Query: 181 LMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPL 240
           L+VV+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGF FVNQ+NVFKVCDQPHPL
Sbjct: 181 LLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKN+VRNVLE KFD AC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNIVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

Query: 301 FAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332
           FAHMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of Cucsa.320140.1 vs. Swiss-Prot
Match: RFC4_ORYSJ (Replication factor C subunit 4 OS=Oryza sativa subsp. japonica GN=RFC4 PE=2 SV=2)

HSP 1 Score: 580.1 bits (1494), Expect = 1.5e-164
Identity = 287/332 (86.45%), Postives = 313/332 (94.28%), Query Frame = 1


Query: 2   ASSSGS---SSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 61
           ASSS +   +  YDIPWVEKYRP +V D+ GN DAV+RLQ IARDGNMPNLILSGPPGTG
Sbjct: 3   ASSSSAPDLADAYDIPWVEKYRPTRVADVGGNSDAVARLQDIARDGNMPNLILSGPPGTG 62

Query: 62  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 121
           KTTSIL+LAHELLGP+Y+E VLELNASDDRG+DVVRNKIKMFAQKKVTL PGRHK+VILD
Sbjct: 63  KTTSILSLAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILD 122

Query: 122 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 181
           EADSMT+GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL+DQEILGR
Sbjct: 123 EADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGR 182

Query: 182 LMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPL 241
           LM+V+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQ+NVFKVCDQPHPL
Sbjct: 183 LMIVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPL 242

Query: 242 HVKNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 301
           HVKN+V+NVL+GKFD+AC+ L+QLYDLGYSPTDIITTLFR+IKNYDMAEYLKLE +KETG
Sbjct: 243 HVKNMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKETG 302

Query: 302 FAHMRICDGVGSYLQLCGLLAKLSMVRETAKA 331
           FAHMRICDGVGS+LQL GLLAK ++VRETAKA
Sbjct: 303 FAHMRICDGVGSFLQLSGLLAKFALVRETAKA 334

[Close]

BLAST of Cucsa.320140.1 vs. Swiss-Prot
Match: RFC2_BOVIN (Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 2.9e-126
Identity = 218/320 (68.12%), Postives = 267/320 (83.44%), Query Frame = 1


Query: 2   ASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 61
           + + GS+ +Y++PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I++GPPGTGKTT
Sbjct: 23  SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 82

Query: 62  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 121
           SIL LA  LLGP  K+ VLELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEAD
Sbjct: 83  SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 142

Query: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 181
           SMT GAQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD +IL RL+ 
Sbjct: 143 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLS 202

Query: 182 VIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVK 241
           VI+ EKV Y  +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N +NVFKVCD+PHPL VK
Sbjct: 203 VIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVK 262

Query: 242 NVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 301
            ++++ +    D+A   L  L+ LGYSP DII  +FR+ K + MAEYLKLEF+KE G+ H
Sbjct: 263 EMIQHCVSADIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 322

Query: 302 MRICDGVGSYLQLCGLLAKL 322
           M+I +GV S LQ+ GLLA+L
Sbjct: 323 MKIAEGVNSLLQMAGLLARL 342

[Close]

BLAST of Cucsa.320140.1 vs. Swiss-Prot
Match: RFC2_HUMAN (Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3)

HSP 1 Score: 452.6 bits (1163), Expect = 3.7e-126
Identity = 218/320 (68.12%), Postives = 267/320 (83.44%), Query Frame = 1


Query: 2   ASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 61
           + + GS+ +Y++PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I++GPPGTGKTT
Sbjct: 25  SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 84

Query: 62  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 121
           SIL LA  LLGP  K+ +LELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEAD
Sbjct: 85  SILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 144

Query: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 181
           SMT GAQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD +IL RLM 
Sbjct: 145 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMN 204

Query: 182 VIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVK 241
           VI+ E+VPY  +GLEAIIFTA GDMRQALNNLQ+T SGF F+N +NVFKVCD+PHPL VK
Sbjct: 205 VIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVK 264

Query: 242 NVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 301
            ++++ +    D+A   L  L+ LGYSP DII  +FR+ K + MAEYLKLEF+KE G+ H
Sbjct: 265 EMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 324

Query: 302 MRICDGVGSYLQLCGLLAKL 322
           M+I +GV S LQ+ GLLA+L
Sbjct: 325 MKIAEGVNSLLQMAGLLARL 344

[Close]

BLAST of Cucsa.320140.1 vs. Swiss-Prot
Match: RFC2_RAT (Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 1.4e-125
Identity = 215/317 (67.82%), Postives = 266/317 (83.91%), Query Frame = 1


Query: 5   SGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSIL 64
           S ++ +Y++PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I++GPPGTGKTTSIL
Sbjct: 23  SKTTGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSIL 82

Query: 65  ALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMT 124
            LA  LLGP  K+ VLELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEADSMT
Sbjct: 83  CLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMT 142

Query: 125 TGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQ 184
            GAQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD ++L RLM VI+
Sbjct: 143 DGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIE 202

Query: 185 AEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVV 244
            EKVPY  +GLEAIIFTA GDMRQALNNLQ+T SGF ++N +NVFKVCD+PHPL VK ++
Sbjct: 203 KEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMI 262

Query: 245 RNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRI 304
           ++ ++   D+A   L  L+ LGYSP D+I  +FR+ K + MAEYLKLEF+KE G+ HM++
Sbjct: 263 QHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKV 322

Query: 305 CDGVGSYLQLCGLLAKL 322
            +GV S LQ+ GLLA+L
Sbjct: 323 AEGVNSLLQMAGLLARL 339

[Close]

BLAST of Cucsa.320140.1 vs. TrEMBL
Match: A0A0A0L763_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G038730 PE=4 SV=1)

HSP 1 Score: 659.4 bits (1700), Expect = 2.2e-186
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 1


Query: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240
           VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332
           HMRICDGVGSYLQLCGLLAKLSMVRETAKAP
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Cucsa.320140.1 vs. TrEMBL
Match: A0A151SLB0_CAJCA (Replication factor C subunit 2 OS=Cajanus cajan GN=KK1_001819 PE=4 SV=1)

HSP 1 Score: 620.5 bits (1599), Expect = 1.1e-174
Identity = 308/330 (93.33%), Postives = 323/330 (97.88%), Query Frame = 1


Query: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
           M+SSS SSS YD+PWVEKYRPN+V DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MSSSSSSSSAYDVPWVEKYRPNRVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLGPNYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180
           DSMT+GAQQALRRTMEI+SNTTRFALACNTS+KIIEPIQSRCAIVRFSRL+DQEILGRLM
Sbjct: 121 DSMTSGAQQALRRTMEIFSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLM 180

Query: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240
           VV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGF+FVNQ NVFKVCDQPHPLHV
Sbjct: 181 VVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFQFVNQANVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KN+VRNV+EG FD+AC+GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKA 331
           HMRICDGVGSYLQLCGLLAKLS+VRETAKA
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSVVRETAKA 330

[Close]

BLAST of Cucsa.320140.1 vs. TrEMBL
Match: A0A067JNM6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20643 PE=4 SV=1)

HSP 1 Score: 619.4 bits (1596), Expect = 2.6e-174
Identity = 306/330 (92.73%), Postives = 324/330 (98.18%), Query Frame = 1


Query: 2   ASSSGSS-SNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 61
           +SS+GSS S YDIPWVEKYRPNK+ DIVGNED VSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 5   SSSAGSSTSGYDIPWVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKT 64

Query: 62  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 121
           TSILALAHELLGPNY+E VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHK+VILDEA
Sbjct: 65  TSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKLVILDEA 124

Query: 122 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 181
           DSMT+GAQQALRRTMEIYSN+TRFALACNTSSKIIEPIQSRCA+VRFSRL+DQEILGRLM
Sbjct: 125 DSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLM 184

Query: 182 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 241
           VV++AEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQ+NVFKVCDQPHPLHV
Sbjct: 185 VVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQENVFKVCDQPHPLHV 244

Query: 242 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 301
           KN+VR V+EGKFDDAC+GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 245 KNMVRQVIEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 304

Query: 302 HMRICDGVGSYLQLCGLLAKLSMVRETAKA 331
           HMRICDGVGSYLQLCGLLAKL++VRETAKA
Sbjct: 305 HMRICDGVGSYLQLCGLLAKLALVRETAKA 334

[Close]

BLAST of Cucsa.320140.1 vs. TrEMBL
Match: M5W470_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008426mg PE=4 SV=1)

HSP 1 Score: 616.7 bits (1589), Expect = 1.7e-173
Identity = 305/329 (92.71%), Postives = 321/329 (97.57%), Query Frame = 1


Query: 2   ASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 61
           +SSS SSS YDIPWVEKYRP+ V DIVGNEDAVSRLQVIARDGNMPNLIL+GPPGTGKTT
Sbjct: 3   SSSSSSSSAYDIPWVEKYRPSNVADIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTT 62

Query: 62  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 121
           SILALAHELLGPNYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD
Sbjct: 63  SILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 122

Query: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 181
           SMT+GAQQALRRTMEIYSN+TRFALACN SSKIIEPIQSRCA+VRFSRL+DQEILGRLM+
Sbjct: 123 SMTSGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCALVRFSRLSDQEILGRLMI 182

Query: 182 VIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVK 241
           V+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQ+NVFKVCDQPHPLHVK
Sbjct: 183 VVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATNSGFRFVNQENVFKVCDQPHPLHVK 242

Query: 242 NVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 301
           N+V NVLEGKFDDAC+GL+QLYDLGYSPTDIITT FRIIKNYDMAEYLKLEFMKETGFAH
Sbjct: 243 NMVCNVLEGKFDDACSGLKQLYDLGYSPTDIITTFFRIIKNYDMAEYLKLEFMKETGFAH 302

Query: 302 MRICDGVGSYLQLCGLLAKLSMVRETAKA 331
           MRICDGVGSYLQLCGLLAKLS++RETAKA
Sbjct: 303 MRICDGVGSYLQLCGLLAKLSLIRETAKA 331

[Close]

BLAST of Cucsa.320140.1 vs. TrEMBL
Match: V7CBL1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G211700g PE=4 SV=1)

HSP 1 Score: 616.3 bits (1588), Expect = 2.2e-173
Identity = 304/328 (92.68%), Postives = 320/328 (97.56%), Query Frame = 1


Query: 3   SSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTS 62
           SSS +S+ YD+PWVEKYRPNKV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTS
Sbjct: 2   SSSSASNTYDVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTS 61

Query: 63  ILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADS 122
           ILALAHELLGPN KEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHK+VILDEADS
Sbjct: 62  ILALAHELLGPNCKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADS 121

Query: 123 MTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVV 182
           MTTGAQQALRRTMEIYSN+TRFALACNTS+KIIEPIQSRCAIVRFSRL DQEILGRLM+V
Sbjct: 122 MTTGAQQALRRTMEIYSNSTRFALACNTSAKIIEPIQSRCAIVRFSRLLDQEILGRLMIV 181

Query: 183 IQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKN 242
           +QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGF+FVNQ NVFKVCDQPHPLHVKN
Sbjct: 182 VQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKN 241

Query: 243 VVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHM 302
           +VRNV+EG FD+AC+GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHM
Sbjct: 242 MVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHM 301

Query: 303 RICDGVGSYLQLCGLLAKLSMVRETAKA 331
           RICDGVGSYLQLCGLLAKLS+VRE AKA
Sbjct: 302 RICDGVGSYLQLCGLLAKLSLVRENAKA 329

[Close]

BLAST of Cucsa.320140.1 vs. TAIR10
Match: AT1G63160.1 (AT1G63160.1 replication factor C 2)

HSP 1 Score: 602.1 bits (1551), Expect = 2.1e-172
Identity = 302/333 (90.69%), Postives = 319/333 (95.80%), Query Frame = 1


Query: 1   MASSSGSSSN--YDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60
           MASSS +S+   Y+ PWVEKYRP+KV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG
Sbjct: 1   MASSSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLG NYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180
           EADSMT+GAQQALRRT+EIYSN+TRFALACNTS+KIIEPIQSRCA+VRFSRL+DQ+ILGR
Sbjct: 121 EADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGR 180

Query: 181 LMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPL 240
           L+VV+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGF FVNQ+NVFKVCDQPHPL
Sbjct: 181 LLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKN+VRNVLE KFD AC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNIVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

Query: 301 FAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332
           FAHMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of Cucsa.320140.1 vs. TAIR10
Match: AT1G77470.1 (AT1G77470.1 replication factor C subunit 3)

HSP 1 Score: 205.7 bits (522), Expect = 4.5e-53
Identity = 118/322 (36.65%), Postives = 185/322 (57.45%), Query Frame = 1


Query: 14  PWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
           PWVEKYRP  + D+  + D +  +  +  +  +P+L+L GPPGTGKT++ILA+A +L GP
Sbjct: 40  PWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGP 99

Query: 74  NYKEGVLELNASDDRGIDVVRNKIKMFAQ-KKVTLPPGRHKVVILDEADSMTTGAQQALR 133
            Y+  +LELNASDDRGIDVVR +I+ FA  +  +L     K+V+LDEAD+MT  AQ ALR
Sbjct: 100 KYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALR 159

Query: 134 RTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQAEKVPYVP 193
           R +E Y+ +TRFAL  N  +KII  +QSRC   RF+ L    +  RL  VI+AE++    
Sbjct: 160 RVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSD 219

Query: 194 EGLEAIIFTADGDMRQALNNLQATHSG--------FRFVNQDNVFKVCDQPHPLHVKNVV 253
            GL A++  ++GDMR+ALN LQ+TH           + + +++V+     P P  ++ + 
Sbjct: 220 CGLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQIS 279

Query: 254 RNVLEGKFDDACTGLRQLYD-LGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMR 313
             +L   FD+    + ++    G +  DI+  +   I    M   ++++ + +      R
Sbjct: 280 HWLLNKPFDECYKDVSEIKTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYR 339

Query: 314 ICDGVGSYLQLCGLLAKLSMVR 326
           +  G    LQL  +++  +  R
Sbjct: 340 LSFGCNDKLQLGAIISTFTHAR 361

[Close]

BLAST of Cucsa.320140.1 vs. TAIR10
Match: AT1G21690.3 (AT1G21690.3 ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 195.7 bits (496), Expect = 4.6e-50
Identity = 118/280 (42.14%), Postives = 156/280 (55.71%), Query Frame = 1


Query: 14  PWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
           PWVEKYRP +V D+   E+ V  L    +  + P+++  GPPGTGKTT+ LA+AH+L GP
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 74  N-YKEGVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTT 133
             YK  VLELNASDDRGI+VVR KIK FA        ++   P    K++ILDEADSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 134 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQA 193
            AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  L+++ +  R++ +   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 194 EKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVVR 253
           E +    E L  +   + GD+R+A+  LQ+    F                PL V N + 
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLF 249

Query: 254 NVLE-GKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYD 285
              + G FD A   +  +   GY  + II  LF I+   D
Sbjct: 250 TACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEAD 289

[Close]

BLAST of Cucsa.320140.1 vs. TAIR10
Match: AT5G27740.1 (AT5G27740.1 ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 75.1 bits (183), Expect = 9.1e-14
Identity = 51/140 (36.43%), Postives = 84/140 (60.00%), Query Frame = 1


Query: 80  LELNASDDRGID--VVRNKIKMFAQKKVTLPPGR--HKVVILDEADSMTTGAQQALRRTM 139
           +EL  SD    D  +V+  IK  A+ +     G+  +KV++L+E D ++  AQ +LRRTM
Sbjct: 95  VELTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTM 154

Query: 140 EIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQAEKVPYVPEGL 199
           E YS++ R  L CN+SSK+ E I+SRC  VR +  + +EI+  L  V + E +  +P+G 
Sbjct: 155 EKYSSSCRLILCCNSSSKVTEAIKSRCLNVRINAPSQEEIVKVLEFVAKKESL-QLPQGF 214

Query: 200 EA-IIFTADGDMRQALNNLQ 215
            A I   ++  +R+A+ +L+
Sbjct: 215 AARIAEKSNRSLRRAILSLE 233

[Close]

BLAST of Cucsa.320140.1 vs. TAIR10
Match: AT5G22010.1 (AT5G22010.1 replication factor C1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-13
Identity = 66/253 (26.09%), Postives = 113/253 (44.66%), Query Frame = 1


Query: 13  IPWVEKYRPNKVTDIVGNEDAVSRL--------------------QVIARDGNMPNLILS 72
           +PW EKYRP    +IVGN+  V++L                    + +   G+   ++LS
Sbjct: 340 LPWTEKYRPKVPNEIVGNQSLVTQLHNWLSHWHDQFGGTGSKGKGKKLNDAGSKKAVLLS 399

Query: 73  GPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRG---IDVVR-------NKIKMFAQ 132
           G PG GKTTS   L  ++LG       +E+NASD RG    ++ +       N +K    
Sbjct: 400 GTPGIGKTTS-AKLVSQMLGFQ----AVEVNASDSRGKANSNIAKGIGGSNANSVKELVN 459

Query: 133 KK---VTLPPGRH--KVVILDEADSMTTGAQQALRRTM-EIYSNTTRFALACNTS-SKII 192
            +         +H   V+I+DE D M+ G +  +   +  I  +       CN   S+ +
Sbjct: 460 NEAMAANFDRSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKL 519

Query: 193 EPIQSRCAIVRFSRLTDQEILGRLMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQA 229
           + + + C  + + + T Q++  RLM + +AE +      LE +    +GD+R A+N LQ 
Sbjct: 520 KSLVNYCLPLNYRKPTKQQMAKRLMHIAKAEGLEINEIALEELAERVNGDIRLAVNQLQY 579

[Close]

BLAST of Cucsa.320140.1 vs. NCBI nr
Match: gi|449460473|ref|XP_004147970.1| (PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 659.4 bits (1700), Expect = 3.2e-186
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 1


Query: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240
           VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332
           HMRICDGVGSYLQLCGLLAKLSMVRETAKAP
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Cucsa.320140.1 vs. NCBI nr
Match: gi|659096165|ref|XP_008448956.1| (PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis melo])

HSP 1 Score: 654.1 bits (1686), Expect = 1.3e-184
Identity = 328/331 (99.09%), Postives = 330/331 (99.70%), Query Frame = 1


Query: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240
           VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KNVVRNVLEGKFDDAC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332
           HMRICDGVGSYLQLCGLLAKLSMVRETAKAP
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Cucsa.320140.1 vs. NCBI nr
Match: gi|951003244|ref|XP_014507551.1| (PREDICTED: replication factor C subunit 2 [Vigna radiata var. radiata])

HSP 1 Score: 620.9 bits (1600), Expect = 1.3e-174
Identity = 307/328 (93.60%), Postives = 321/328 (97.87%), Query Frame = 1


Query: 3   SSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTS 62
           SSS SS  YD+PWVEKYRPNKV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTS
Sbjct: 2   SSSSSSHTYDVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTS 61

Query: 63  ILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADS 122
           ILALAHELLGPN KEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHK+VILDEADS
Sbjct: 62  ILALAHELLGPNCKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADS 121

Query: 123 MTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVV 182
           MTTGAQQALRRTMEIYSN+TRFALACNTS+KIIEPIQSRCAIVRFSRL+DQEILGRLM+V
Sbjct: 122 MTTGAQQALRRTMEIYSNSTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMIV 181

Query: 183 IQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKN 242
           +QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGF+FVNQ NVFKVCDQPHPLHVKN
Sbjct: 182 VQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKN 241

Query: 243 VVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHM 302
           +VRNV+EG FDDAC+GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHM
Sbjct: 242 MVRNVIEGNFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHM 301

Query: 303 RICDGVGSYLQLCGLLAKLSMVRETAKA 331
           RICDGVGSYLQLCGLLAKLS+VRETAKA
Sbjct: 302 RICDGVGSYLQLCGLLAKLSLVRETAKA 329

[Close]

BLAST of Cucsa.320140.1 vs. NCBI nr
Match: gi|1012344408|gb|KYP55600.1| (Replication factor C subunit 2 [Cajanus cajan])

HSP 1 Score: 620.5 bits (1599), Expect = 1.6e-174
Identity = 308/330 (93.33%), Postives = 323/330 (97.88%), Query Frame = 1


Query: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
           M+SSS SSS YD+PWVEKYRPN+V DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MSSSSSSSSAYDVPWVEKYRPNRVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLGPNYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180
           DSMT+GAQQALRRTMEI+SNTTRFALACNTS+KIIEPIQSRCAIVRFSRL+DQEILGRLM
Sbjct: 121 DSMTSGAQQALRRTMEIFSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLM 180

Query: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240
           VV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGF+FVNQ NVFKVCDQPHPLHV
Sbjct: 181 VVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFQFVNQANVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KN+VRNV+EG FD+AC+GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKA 331
           HMRICDGVGSYLQLCGLLAKLS+VRETAKA
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSVVRETAKA 330

[Close]

BLAST of Cucsa.320140.1 vs. NCBI nr
Match: gi|802740932|ref|XP_012086977.1| (PREDICTED: replication factor C subunit 2 [Jatropha curcas])

HSP 1 Score: 619.4 bits (1596), Expect = 3.7e-174
Identity = 306/330 (92.73%), Postives = 324/330 (98.18%), Query Frame = 1


Query: 2   ASSSGSS-SNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 61
           +SS+GSS S YDIPWVEKYRPNK+ DIVGNED VSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 5   SSSAGSSTSGYDIPWVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKT 64

Query: 62  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 121
           TSILALAHELLGPNY+E VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHK+VILDEA
Sbjct: 65  TSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKLVILDEA 124

Query: 122 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 181
           DSMT+GAQQALRRTMEIYSN+TRFALACNTSSKIIEPIQSRCA+VRFSRL+DQEILGRLM
Sbjct: 125 DSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLM 184

Query: 182 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 241
           VV++AEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQ+NVFKVCDQPHPLHV
Sbjct: 185 VVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQENVFKVCDQPHPLHV 244

Query: 242 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 301
           KN+VR V+EGKFDDAC+GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 245 KNMVRQVIEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 304

Query: 302 HMRICDGVGSYLQLCGLLAKLSMVRETAKA 331
           HMRICDGVGSYLQLCGLLAKL++VRETAKA
Sbjct: 305 HMRICDGVGSYLQLCGLLAKLALVRETAKA 334

The following BLAST results are available for this feature:

BLAST of Cucsa.320140.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RFC2_ARATH	3.8e-171	90.69	Replication factor C subunit 2 OS=Arabidopsis thaliana GN=RFC2 PE=1 SV=1	[more]
RFC4_ORYSJ	1.5e-164	86.45	Replication factor C subunit 4 OS=Oryza sativa subsp. japonica GN=RFC4 PE=2 SV=2	[more]
RFC2_BOVIN	2.9e-126	68.13	Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1	[more]
RFC2_HUMAN	3.7e-126	68.13	Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3	[more]
RFC2_RAT	1.4e-125	67.82	Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2 SV=1	[more]

BLAST of Cucsa.320140.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L763_CUCSA	2.2e-186	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G038730 PE=4 SV=1	[more]
A0A151SLB0_CAJCA	1.1e-174	93.33	Replication factor C subunit 2 OS=Cajanus cajan GN=KK1_001819 PE=4 SV=1	[more]
A0A067JNM6_JATCU	2.6e-174	92.73	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20643 PE=4 SV=1	[more]
M5W470_PRUPE	1.7e-173	92.71	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008426mg PE=4 SV=1	[more]
V7CBL1_PHAVU	2.2e-173	92.68	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G211700g PE=4 SV=1	[more]

BLAST of Cucsa.320140.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G63160.1	2.1e-172	90.69	replication factor C 2	[more]
AT1G77470.1	4.5e-53	36.65	replication factor C subunit 3	[more]
AT1G21690.3	4.6e-50	42.14	ATPase family associated with various cellular activities (AAA)	[more]
AT5G27740.1	9.1e-14	36.43	ATPase family associated with various cellular activities (AAA)	[more]
AT5G22010.1	2.0e-13	26.09	replication factor C1	[more]

BLAST of Cucsa.320140.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460473\|ref\|XP_004147970.1\|	3.2e-186	100.00	PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis sativus]	[more]
gi\|659096165\|ref\|XP_008448956.1\|	1.3e-184	99.09	PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis melo]	[more]
gi\|951003244\|ref\|XP_014507551.1\|	1.3e-174	93.60	PREDICTED: replication factor C subunit 2 [Vigna radiata var. radiata]	[more]
gi\|1012344408\|gb\|KYP55600.1\|	1.6e-174	93.33	Replication factor C subunit 2 [Cajanus cajan]	[more]
gi\|802740932\|ref\|XP_012086977.1\|	3.7e-174	92.73	PREDICTED: replication factor C subunit 2 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003593	AAA+_ATPase
IPR003959	ATPase_AAA_core
IPR008921	DNA_pol3_clamp-load_cplx_C
IPR013748	Rep_factorC_C
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006260	DNA replication

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0071897	DNA biosynthetic process
cellular_component	GO:0042575	DNA polymerase complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.320140	Cucsa.320140	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.320140.1	Cucsa.320140.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.320140.1.five_prime_UTR.1	Cucsa.320140.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.320140.1.CDS.1	Cucsa.320140.1.CDS.1	CDS
Cucsa.320140.1.CDS.2	Cucsa.320140.1.CDS.2	CDS
Cucsa.320140.1.CDS.3	Cucsa.320140.1.CDS.3	CDS
Cucsa.320140.1.CDS.4	Cucsa.320140.1.CDS.4	CDS
Cucsa.320140.1.CDS.5	Cucsa.320140.1.CDS.5	CDS
Cucsa.320140.1.CDS.6	Cucsa.320140.1.CDS.6	CDS
Cucsa.320140.1.CDS.7	Cucsa.320140.1.CDS.7	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.320140.1.three_prime_UTR.1	Cucsa.320140.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 45..177 score: 5.6
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 49..167 score: 1.3
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	unknown	SSF48019	post-AAA+ oligomerization domain-like	coord: 234..325 score: 2.75
IPR013748	Replication factor C, C-terminal	PFAM	PF08542	Rep_fac_C	coord: 235..320 score: 2.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 14..170 score: 1.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..233 score: 6.8
None	No IPR available	GENE3D	G3DSA:1.10.8.60		coord: 171..235 score: 3.9
None	No IPR available	GENE3D	G3DSA:1.20.272.10		coord: 236..326 score: 1.3
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 1..326 score: 4.5E
None	No IPR available	PANTHER	PTHR11669:SF5	REPLICATION FACTOR C SUBUNIT 2	coord: 1..326 score: 4.5E