Cucsa.320140 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.320140
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Replication factor C subunit 2
Location	scaffold03080 : 38161 .. 43347 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGCGAAGCGGGAATTGGAAGGGCAAAGTTCTTCTTCCTGAATTCGTTCTACTCTCTCTCGAGCATCCCAATTCATCTGTTCGAACATTCTATGGCGTCTTCTTCAGGCAGCAGTAGCAACTACGACATTCCATGGGTGGAGAAGTACAGGCCCAACAAGGTCACCGACATTGTGGGTAATGAAGATGCAGTTTCTCGTCTCCAAGTCATTGCTCGGGACGGCAACATGCCCAATCTCATATTATCTGTACTCTTCTCCATCTCTAATATTTTCCGTAATTTTCCCTCTTTAGTTTGCATTGCACCAATTGGGTTTCTGTTAATTTTTAGTCTGACTACTAACTTGTTTACAATTGGTACTGAAAATGGACTTGTGTATCTAGAGCTATGTGAAGTAGAAAATCATGCAGCTTGAACGTTTTCTTAATGGCTTTGGGGGTTTGGGAACTAGTAAGGCTCGAATTTTATCCTAATTTTTGTTATCATTTTTGGCGGGGTTTTAATGTTCTGTAATCAAATGCACAATTTTTTTTCTAAAAGGGGTTGATGCAAGTGACAAGTAAAAGGCTCTATAAGTGCTAATTTACGTTGTTGATGGTTTTTTTTTAATGTACTGCAGCTTGAATTTTGTTGCTATGATGAGGTTTTTGATGAAATGTTGTAGGGTTAGACAGTTTTGGTAGGAACATGTATTGCTATGGATTTTAATGTATGTTGTTGCTACATGTTTGTTTTCTAGGGTCCGCCAGGAACTGGGAAGACAACCAGTATTTTGGCTCTTGCTCATGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGTGAGATATTCTATGGTTTTTAAGTCTCAAAATATTTCAAATGTTACTTGATCTGTGTTTTTTtCTAATCTGAGTTCTTGTTTAGGGGAATAGATGTCGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACATTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGGTAGGTTTCAACGGATATAATGCTAGGGAAGCCCAAACACTTTTTTTGGGGAGAGTGTTCTTGTCAGGCATGCATGCGAAAAAAaGTGTCCTATTTTATTTTGTATTTTCTTTTCGGTTTCGAACACTCATGGGACACATAAACCTATAAAATTGATTGAGAATTTGAAACAAGAATTTTCTTTGTCTTCTTTTGCTCTGCTCTTCAGTTTCTTACTTTGAGTCCTGTTATTAATTTGTTACTTTTGGTGGTAATTATGATTGTGAAAATAATCCAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATTTATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTGATTCAGGCAGAAAAGGTATCGTTCGTTTATTTGTCATAATGCCTAGACTACATTTCTGTTGTTATAAATATAGTCATTCTGCTGAATTTAATTGTTATCGAAAACAAAATACTACTTAATTATCTTCGGAAGAAATTATCACTTCAGTGGTAGGCTGCAACAGTTTGTTAGATCTCATGCAATTGATTCATTATGTAATTGGTCTTCCCcCCCcGGGAATGGCTAGGTTGTTAAGGAACTGGTTAAGCAAGTGATATACCCATGGAGTGCACATTTGGAAATGACATAAGCAATCACTAGTTTCTGCCTTGAATTTTTGTTCACTTGAATTAATAATTTGAGAAAGTGGCTCAACTACTGTTGTTGGAGAAATGTGGAAGTCTAGGTTTTGGTTGAATTTCTCTAGAAAGCTCAAGTCTAAAAAAaCCAATCGTATTTTGTGGAGCGAAGAGGTAAATGACATACCCTTGAGGCGTTTCAATAGTTTCATTGATGGAAGTAAGCTGTTTGACCGTCCATTGCTGAATGGGAAGTTTGCGTGGGCTAATTGTATGGCTGCAACTAAGACTGGTAGATTTTTACTTTCAGAAGGTTGGATTAAGAGTTTGGTAGCCCTAGACAGTTGAGGGGGCCAAGATTCACCATCAAATCAACAACTGCTACTCCTCCTTTCAACCCTTCATCTTCATCTTCAGCTCCCAATCTCCTTCTCTTCTCTTTTTTCCTCATCAAAAGGCTCTCGAGGAAATCTAAAAAGAAAGAATTTTTCTAAGATCTTCCAACATTACTTCAAGCAATTTCTGAAGTATTTTATCCGGAAGAAAAAATCAAAGATTATGGAAAAATGTTCCTTAAAAGCCCAGATTTTAGATGATCAAGTACCCGTTTTGCTTGAGGAAAATACTGCCCATTCTATTTCATCAGCTTATTCCAGCAGCTCCAAGCTGTTTGTAGAGACTAATCATGATTTATTGGAAGTCAGTTGCACCCAAATTCAAGCCCCAGCCCGTTCTTCTAGGTCATTTTCTCATCATCCTCACTTTATCCAGTTTAAGTACTCTGAGTTCTCTCTGCCTAACTCCAAGGTTAAATTTCTGAAGGGCTCTCCAAGAAAAACCCCTCACAATCAATCCAACAAGAAGGGTGAGCATTTTTTCAACTCCCCTCTCAGTGTTTGTAGCGAGGAATTGGAGCATTTGGATAGGTAAACCGAACTTGAAAGTTAGAAACATTTGAGCCTCTAGAAACTGATCTCAATGCTCTGTTTCAATGCGAGGAATAGCTAGTATCCGCAAAGTTTCCTTCTGCTACTCGTTCTTGTCCTTGGTCTTGCAAAATACTAGATCATTTAAAATCAATAGTTGCTGATTGTGGATTTATTCTAATTTGATTCTTCAACAGTTTAATGTATTTCTCCTCTATGTAAGACTAACTTCAGTCATTCTTGGATTTCCCTTCATATGGGTGGCAAGTAAATTCTACATGCCGATGCTGAATAGTGAAATACTTTTTCGAGCTTCCTCTAGATTATGGATTAATTTGGTTAGGCAGCTGGTTGCATCTTCTTGAAAGGTTTTAGTTTCAATTTAGTTCTTTATGAGAGAATTTTGCATTATTCTTTGTAATTAGATTTCTTCAGATATGGTTTTGTTGAGCTTGATCTCTTCCTTTTGGAATTTGCATGACAAGTTTTACTTGGTCGTGTGAACATTATGGATAGGCTACTACAGTAGAAGAAGTTTTCGCTTATGAAGCCTTTTTGTTGTGTTCTTTATTGGAAGGCGGAGGAAGACCTATATCACCTTCTTTGGAATTGTTAGTTTGCTAGATCGGTGTGGAACTATTTCTTTCAAGAGTTCCATATTGAGCTAGCTTGCTAGAGAGTTGTTCGGGAGACGATCAAGGAGCTCATTCTTCATATGTCTTTCATTGAGAAATACTGTTTTTTATGGTCAGCTGAGGTGTGTGCTATTCTCTGAGATATTTTGGGGGgAGAGGAATAATGTAGTGTTTAGGGGTGTGTGGAGAGAGACAATAATGATGTTTGGTTTTTGGGGAAGTTTCATGTTTATCTTTAAACTTCGGTCTCAAGTACTTTTTGTAATTAACTCCTGGGTAGCATCTTACTTAGTTGAGAACCCTTTCTTTAGAGGTGTTTTGTTGGTTTTTCTTTTTCTTGTATAATAATCCCCTTTCATGTATTTACTACTTTTTTTATCCCACGTAAATGGTAAACTAAAAAATCTTCAATGCTCTTTAATAATGAAAATAAAAAAGTTCGCTAGTCTGAGGGAAGAGTTGGCTCTCACTGATCTTTTATGGAATGCGAGGGGCTTCAAGTCTCTAGCCAGAAAATTAATGCTAAGTATACTTCTGATTTTGTCATTCTCACCAAAATTAGACAAAAaGGTTAATAGGTTGCTAAGGCTGGAGTTCTAGAAGTGTTGAATGGACTTCTTAAGATGATGTAGGTTCCTTTTGGTAGTATAGTCATTTTTCCTCCCCTCTTTCTTCTTTGGAAGGACTTGCTCTAGATGAAAGGTGTGCTCTTCCTCTATTTTGGTGGTTATCTTAAGGCTAATGGTGTTTGTTGGTGGATTTTAGGCATATGTCTTAGGCCCAGCTAACACGATGAGACAAGTTTTGAAGGGAATTATGTGACTTTCAAGTTATATCACTCAATGAAAGTTGTTTTCTTTTACAACAAAACTATTCTCTTTCAGCACTTCATTGAGTTGATTAAAGAATGATCACGGGTGAATAGCTCTGACTGTATTTTTACTGCGCGGGTCAACAAGTCCTCCCTTTCTTTTATTCCCAATACAAAAGGAATATATTGAGGAAGTATAGTTTTGATTATTGTTTAAAAATATGAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGCTGAATAATTTGCAAGCTACACATAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTCTTGTCACGTGTTTTTATCTTTTTGTATCTTCTATAAACTCAGAAAATGTCATCTTGACATGCTTGTTGATTCTCCAGGTTTGCGATCAACCACATCCGCTGCATGTGAAGAATGTGGTACGCAATGTGCTTGAAGGTAAATTTGATGATGCTTGTACAGGCCTGAGGCAACTCTACGACTTAGGCTATTCCCCCACTGACATAATAACCACTCTTTTCCGAATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGTATTTTAAAACCCGAGGCATCATTTGATCATACCAGGTTAACCAAGTACTCACTCTTTTTGATGAATTGCAGGAAACTGGGTTTGCCCATATGAGAATCTGTGATGGTGTCGGTTCTTACCTTCAACTATGTGGTCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCAAAAGCACCATGAGTAGTCAACATGTAGAGGCTGCTTAAATTTGGCTCACAGGAGGTAGTATGAATGTAAACATCTGTGTTCCTTAGGATATTAACTATATTTTTGTAAGATGTAGTCAGATTGAGCTCAAAATTTATCACGTTACTTACTATATCGTCTTGCTAAAGTTTTAGGCCAATGGCAATCTTGTCAAGGTTTTCCTCCCCACCCCCACCCACCTAGTAATAGGTACAAACAAGCC

mRNA sequence

GGCGCGAAGCGGGAATTGGAAGGGCAAAGTTCTTCTTCCTGAATTCGTTCTACTCTCTCTCGAGCATCCCAATTCATCTGTTCGAACATTCTATGGCGTCTTCTTCAGGCAGCAGTAGCAACTACGACATTCCATGGGTGGAGAAGTACAGGCCCAACAAGGTCACCGACATTGTGGGTAATGAAGATGCAGTTTCTCGTCTCCAAGTCATTGCTCGGGACGGCAACATGCCCAATCTCATATTATCTGGTCCGCCAGGAACTGGGAAGACAACCAGTATTTTGGCTCTTGCTCATGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTCGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACATTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATTTATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTGATTCAGGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGCTGAATAATTTGCAAGCTACACATAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGCGATCAACCACATCCGCTGCATGTGAAGAATGTGGTACGCAATGTGCTTGAAGGTAAATTTGATGATGCTTGTACAGGCCTGAGGCAACTCTACGACTTAGGCTATTCCCCCACTGACATAATAACCACTCTTTTCCGAATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATCTGTGATGGTGTCGGTTCTTACCTTCAACTATGTGGTCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCAAAAGCACCATGAGTAGTCAACATGTAGAGGCTGCTTAAATTTGGCTCACAGGAGGTAGTATGAATGTAAACATCTGTGTTCCTTAGGATATTAACTATATTTTTGTAAGATGTAGTCAGATTGAGCTCAAAATTTATCACGTTACTTACTATATCGTCTTGCTAAAGTTTTAGGCCAATGGCAATCTTGTCAAGGTTTTCCTCCCCACCCCCACCCACCTAGTAATAGGTACAAACAAGCC

Coding sequence (CDS)

ATGGCGTCTTCTTCAGGCAGCAGTAGCAACTACGACATTCCATGGGTGGAGAAGTACAGGCCCAACAAGGTCACCGACATTGTGGGTAATGAAGATGCAGTTTCTCGTCTCCAAGTCATTGCTCGGGACGGCAACATGCCCAATCTCATATTATCTGGTCCGCCAGGAACTGGGAAGACAACCAGTATTTTGGCTCTTGCTCATGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTCGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACATTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATTTATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTGATTCAGGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGCTGAATAATTTGCAAGCTACACATAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGCGATCAACCACATCCGCTGCATGTGAAGAATGTGGTACGCAATGTGCTTGAAGGTAAATTTGATGATGCTTGTACAGGCCTGAGGCAACTCTACGACTTAGGCTATTCCCCCACTGACATAATAACCACTCTTTTCCGAATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATCTGTGATGGTGTCGGTTCTTACCTTCAACTATGTGGTCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCAAAAGCACCATGA

Protein sequence

MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP*

Homology

[Close]

BLAST of Cucsa.320140 vs. Swiss-Prot
Match: RFC2_ARATH (Replication factor C subunit 2 OS=Arabidopsis thaliana GN=RFC2 PE=1 SV=1)

HSP 1 Score: 602.1 bits (1551), Expect = 3.8e-171
Identity = 302/333 (90.69%), Postives = 319/333 (95.80%), Query Frame = 1


Query: 1   MASSSGSSSN--YDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60
           MASSS +S+   Y+ PWVEKYRP+KV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG
Sbjct: 1   MASSSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLG NYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180
           EADSMT+GAQQALRRT+EIYSN+TRFALACNTS+KIIEPIQSRCA+VRFSRL+DQ+ILGR
Sbjct: 121 EADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGR 180

Query: 181 LMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPL 240
           L+VV+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGF FVNQ+NVFKVCDQPHPL
Sbjct: 181 LLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKN+VRNVLE KFD AC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNIVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

Query: 301 FAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332
           FAHMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of Cucsa.320140 vs. Swiss-Prot
Match: RFC4_ORYSJ (Replication factor C subunit 4 OS=Oryza sativa subsp. japonica GN=RFC4 PE=2 SV=2)

HSP 1 Score: 580.1 bits (1494), Expect = 1.5e-164
Identity = 287/332 (86.45%), Postives = 313/332 (94.28%), Query Frame = 1


Query: 2   ASSSGS---SSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 61
           ASSS +   +  YDIPWVEKYRP +V D+ GN DAV+RLQ IARDGNMPNLILSGPPGTG
Sbjct: 3   ASSSSAPDLADAYDIPWVEKYRPTRVADVGGNSDAVARLQDIARDGNMPNLILSGPPGTG 62

Query: 62  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 121
           KTTSIL+LAHELLGP+Y+E VLELNASDDRG+DVVRNKIKMFAQKKVTL PGRHK+VILD
Sbjct: 63  KTTSILSLAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILD 122

Query: 122 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 181
           EADSMT+GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL+DQEILGR
Sbjct: 123 EADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGR 182

Query: 182 LMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPL 241
           LM+V+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQ+NVFKVCDQPHPL
Sbjct: 183 LMIVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPL 242

Query: 242 HVKNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 301
           HVKN+V+NVL+GKFD+AC+ L+QLYDLGYSPTDIITTLFR+IKNYDMAEYLKLE +KETG
Sbjct: 243 HVKNMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKETG 302

Query: 302 FAHMRICDGVGSYLQLCGLLAKLSMVRETAKA 331
           FAHMRICDGVGS+LQL GLLAK ++VRETAKA
Sbjct: 303 FAHMRICDGVGSFLQLSGLLAKFALVRETAKA 334

[Close]

BLAST of Cucsa.320140 vs. Swiss-Prot
Match: RFC2_BOVIN (Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 2.9e-126
Identity = 218/320 (68.12%), Postives = 267/320 (83.44%), Query Frame = 1


Query: 2   ASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 61
           + + GS+ +Y++PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I++GPPGTGKTT
Sbjct: 23  SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 82

Query: 62  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 121
           SIL LA  LLGP  K+ VLELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEAD
Sbjct: 83  SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 142

Query: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 181
           SMT GAQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD +IL RL+ 
Sbjct: 143 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLS 202

Query: 182 VIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVK 241
           VI+ EKV Y  +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N +NVFKVCD+PHPL VK
Sbjct: 203 VIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVK 262

Query: 242 NVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 301
            ++++ +    D+A   L  L+ LGYSP DII  +FR+ K + MAEYLKLEF+KE G+ H
Sbjct: 263 EMIQHCVSADIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 322

Query: 302 MRICDGVGSYLQLCGLLAKL 322
           M+I +GV S LQ+ GLLA+L
Sbjct: 323 MKIAEGVNSLLQMAGLLARL 342

[Close]

BLAST of Cucsa.320140 vs. Swiss-Prot
Match: RFC2_HUMAN (Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3)

HSP 1 Score: 452.6 bits (1163), Expect = 3.7e-126
Identity = 218/320 (68.12%), Postives = 267/320 (83.44%), Query Frame = 1


Query: 2   ASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 61
           + + GS+ +Y++PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I++GPPGTGKTT
Sbjct: 25  SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 84

Query: 62  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 121
           SIL LA  LLGP  K+ +LELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEAD
Sbjct: 85  SILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 144

Query: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 181
           SMT GAQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD +IL RLM 
Sbjct: 145 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMN 204

Query: 182 VIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVK 241
           VI+ E+VPY  +GLEAIIFTA GDMRQALNNLQ+T SGF F+N +NVFKVCD+PHPL VK
Sbjct: 205 VIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVK 264

Query: 242 NVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 301
            ++++ +    D+A   L  L+ LGYSP DII  +FR+ K + MAEYLKLEF+KE G+ H
Sbjct: 265 EMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 324

Query: 302 MRICDGVGSYLQLCGLLAKL 322
           M+I +GV S LQ+ GLLA+L
Sbjct: 325 MKIAEGVNSLLQMAGLLARL 344

[Close]

BLAST of Cucsa.320140 vs. Swiss-Prot
Match: RFC2_RAT (Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 1.4e-125
Identity = 215/317 (67.82%), Postives = 266/317 (83.91%), Query Frame = 1


Query: 5   SGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSIL 64
           S ++ +Y++PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I++GPPGTGKTTSIL
Sbjct: 23  SKTTGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSIL 82

Query: 65  ALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMT 124
            LA  LLGP  K+ VLELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEADSMT
Sbjct: 83  CLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMT 142

Query: 125 TGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQ 184
            GAQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD ++L RLM VI+
Sbjct: 143 DGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIE 202

Query: 185 AEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVV 244
            EKVPY  +GLEAIIFTA GDMRQALNNLQ+T SGF ++N +NVFKVCD+PHPL VK ++
Sbjct: 203 KEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMI 262

Query: 245 RNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRI 304
           ++ ++   D+A   L  L+ LGYSP D+I  +FR+ K + MAEYLKLEF+KE G+ HM++
Sbjct: 263 QHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKV 322

Query: 305 CDGVGSYLQLCGLLAKL 322
            +GV S LQ+ GLLA+L
Sbjct: 323 AEGVNSLLQMAGLLARL 339

[Close]

BLAST of Cucsa.320140 vs. TrEMBL
Match: A0A0A0L763_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G038730 PE=4 SV=1)

HSP 1 Score: 659.4 bits (1700), Expect = 2.2e-186
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 1


Query: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240
           VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332
           HMRICDGVGSYLQLCGLLAKLSMVRETAKAP
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Cucsa.320140 vs. TrEMBL
Match: A0A151SLB0_CAJCA (Replication factor C subunit 2 OS=Cajanus cajan GN=KK1_001819 PE=4 SV=1)

HSP 1 Score: 620.5 bits (1599), Expect = 1.1e-174
Identity = 308/330 (93.33%), Postives = 323/330 (97.88%), Query Frame = 1


Query: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
           M+SSS SSS YD+PWVEKYRPN+V DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MSSSSSSSSAYDVPWVEKYRPNRVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLGPNYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180
           DSMT+GAQQALRRTMEI+SNTTRFALACNTS+KIIEPIQSRCAIVRFSRL+DQEILGRLM
Sbjct: 121 DSMTSGAQQALRRTMEIFSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLM 180

Query: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240
           VV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGF+FVNQ NVFKVCDQPHPLHV
Sbjct: 181 VVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFQFVNQANVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KN+VRNV+EG FD+AC+GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKA 331
           HMRICDGVGSYLQLCGLLAKLS+VRETAKA
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSVVRETAKA 330

[Close]

BLAST of Cucsa.320140 vs. TrEMBL
Match: A0A067JNM6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20643 PE=4 SV=1)

HSP 1 Score: 619.4 bits (1596), Expect = 2.6e-174
Identity = 306/330 (92.73%), Postives = 324/330 (98.18%), Query Frame = 1


Query: 2   ASSSGSS-SNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 61
           +SS+GSS S YDIPWVEKYRPNK+ DIVGNED VSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 5   SSSAGSSTSGYDIPWVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKT 64

Query: 62  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 121
           TSILALAHELLGPNY+E VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHK+VILDEA
Sbjct: 65  TSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKLVILDEA 124

Query: 122 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 181
           DSMT+GAQQALRRTMEIYSN+TRFALACNTSSKIIEPIQSRCA+VRFSRL+DQEILGRLM
Sbjct: 125 DSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLM 184

Query: 182 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 241
           VV++AEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQ+NVFKVCDQPHPLHV
Sbjct: 185 VVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQENVFKVCDQPHPLHV 244

Query: 242 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 301
           KN+VR V+EGKFDDAC+GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 245 KNMVRQVIEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 304

Query: 302 HMRICDGVGSYLQLCGLLAKLSMVRETAKA 331
           HMRICDGVGSYLQLCGLLAKL++VRETAKA
Sbjct: 305 HMRICDGVGSYLQLCGLLAKLALVRETAKA 334

[Close]

BLAST of Cucsa.320140 vs. TrEMBL
Match: M5W470_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008426mg PE=4 SV=1)

HSP 1 Score: 616.7 bits (1589), Expect = 1.7e-173
Identity = 305/329 (92.71%), Postives = 321/329 (97.57%), Query Frame = 1


Query: 2   ASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 61
           +SSS SSS YDIPWVEKYRP+ V DIVGNEDAVSRLQVIARDGNMPNLIL+GPPGTGKTT
Sbjct: 3   SSSSSSSSAYDIPWVEKYRPSNVADIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTT 62

Query: 62  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 121
           SILALAHELLGPNYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD
Sbjct: 63  SILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 122

Query: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 181
           SMT+GAQQALRRTMEIYSN+TRFALACN SSKIIEPIQSRCA+VRFSRL+DQEILGRLM+
Sbjct: 123 SMTSGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCALVRFSRLSDQEILGRLMI 182

Query: 182 VIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVK 241
           V+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQ+NVFKVCDQPHPLHVK
Sbjct: 183 VVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATNSGFRFVNQENVFKVCDQPHPLHVK 242

Query: 242 NVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 301
           N+V NVLEGKFDDAC+GL+QLYDLGYSPTDIITT FRIIKNYDMAEYLKLEFMKETGFAH
Sbjct: 243 NMVCNVLEGKFDDACSGLKQLYDLGYSPTDIITTFFRIIKNYDMAEYLKLEFMKETGFAH 302

Query: 302 MRICDGVGSYLQLCGLLAKLSMVRETAKA 331
           MRICDGVGSYLQLCGLLAKLS++RETAKA
Sbjct: 303 MRICDGVGSYLQLCGLLAKLSLIRETAKA 331

[Close]

BLAST of Cucsa.320140 vs. TrEMBL
Match: V7CBL1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G211700g PE=4 SV=1)

HSP 1 Score: 616.3 bits (1588), Expect = 2.2e-173
Identity = 304/328 (92.68%), Postives = 320/328 (97.56%), Query Frame = 1


Query: 3   SSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTS 62
           SSS +S+ YD+PWVEKYRPNKV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTS
Sbjct: 2   SSSSASNTYDVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTS 61

Query: 63  ILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADS 122
           ILALAHELLGPN KEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHK+VILDEADS
Sbjct: 62  ILALAHELLGPNCKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADS 121

Query: 123 MTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVV 182
           MTTGAQQALRRTMEIYSN+TRFALACNTS+KIIEPIQSRCAIVRFSRL DQEILGRLM+V
Sbjct: 122 MTTGAQQALRRTMEIYSNSTRFALACNTSAKIIEPIQSRCAIVRFSRLLDQEILGRLMIV 181

Query: 183 IQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKN 242
           +QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGF+FVNQ NVFKVCDQPHPLHVKN
Sbjct: 182 VQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKN 241

Query: 243 VVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHM 302
           +VRNV+EG FD+AC+GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHM
Sbjct: 242 MVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHM 301

Query: 303 RICDGVGSYLQLCGLLAKLSMVRETAKA 331
           RICDGVGSYLQLCGLLAKLS+VRE AKA
Sbjct: 302 RICDGVGSYLQLCGLLAKLSLVRENAKA 329

[Close]

BLAST of Cucsa.320140 vs. TAIR10
Match: AT1G63160.1 (AT1G63160.1 replication factor C 2)

HSP 1 Score: 602.1 bits (1551), Expect = 2.1e-172
Identity = 302/333 (90.69%), Postives = 319/333 (95.80%), Query Frame = 1


Query: 1   MASSSGSSSN--YDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60
           MASSS +S+   Y+ PWVEKYRP+KV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG
Sbjct: 1   MASSSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLG NYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180
           EADSMT+GAQQALRRT+EIYSN+TRFALACNTS+KIIEPIQSRCA+VRFSRL+DQ+ILGR
Sbjct: 121 EADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGR 180

Query: 181 LMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPL 240
           L+VV+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGF FVNQ+NVFKVCDQPHPL
Sbjct: 181 LLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKN+VRNVLE KFD AC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNIVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

Query: 301 FAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332
           FAHMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of Cucsa.320140 vs. TAIR10
Match: AT1G77470.1 (AT1G77470.1 replication factor C subunit 3)

HSP 1 Score: 205.7 bits (522), Expect = 4.5e-53
Identity = 118/322 (36.65%), Postives = 185/322 (57.45%), Query Frame = 1


Query: 14  PWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
           PWVEKYRP  + D+  + D +  +  +  +  +P+L+L GPPGTGKT++ILA+A +L GP
Sbjct: 40  PWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGP 99

Query: 74  NYKEGVLELNASDDRGIDVVRNKIKMFAQ-KKVTLPPGRHKVVILDEADSMTTGAQQALR 133
            Y+  +LELNASDDRGIDVVR +I+ FA  +  +L     K+V+LDEAD+MT  AQ ALR
Sbjct: 100 KYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALR 159

Query: 134 RTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQAEKVPYVP 193
           R +E Y+ +TRFAL  N  +KII  +QSRC   RF+ L    +  RL  VI+AE++    
Sbjct: 160 RVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSD 219

Query: 194 EGLEAIIFTADGDMRQALNNLQATHSG--------FRFVNQDNVFKVCDQPHPLHVKNVV 253
            GL A++  ++GDMR+ALN LQ+TH           + + +++V+     P P  ++ + 
Sbjct: 220 CGLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQIS 279

Query: 254 RNVLEGKFDDACTGLRQLYD-LGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMR 313
             +L   FD+    + ++    G +  DI+  +   I    M   ++++ + +      R
Sbjct: 280 HWLLNKPFDECYKDVSEIKTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYR 339

Query: 314 ICDGVGSYLQLCGLLAKLSMVR 326
           +  G    LQL  +++  +  R
Sbjct: 340 LSFGCNDKLQLGAIISTFTHAR 361

[Close]

BLAST of Cucsa.320140 vs. TAIR10
Match: AT1G21690.3 (AT1G21690.3 ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 195.7 bits (496), Expect = 4.6e-50
Identity = 118/280 (42.14%), Postives = 156/280 (55.71%), Query Frame = 1


Query: 14  PWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
           PWVEKYRP +V D+   E+ V  L    +  + P+++  GPPGTGKTT+ LA+AH+L GP
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 74  N-YKEGVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTT 133
             YK  VLELNASDDRGI+VVR KIK FA        ++   P    K++ILDEADSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 134 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQA 193
            AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  L+++ +  R++ +   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 194 EKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVVR 253
           E +    E L  +   + GD+R+A+  LQ+    F                PL V N + 
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLF 249

Query: 254 NVLE-GKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYD 285
              + G FD A   +  +   GY  + II  LF I+   D
Sbjct: 250 TACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEAD 289

[Close]

BLAST of Cucsa.320140 vs. TAIR10
Match: AT5G27740.1 (AT5G27740.1 ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 75.1 bits (183), Expect = 9.1e-14
Identity = 51/140 (36.43%), Postives = 84/140 (60.00%), Query Frame = 1


Query: 80  LELNASDDRGID--VVRNKIKMFAQKKVTLPPGR--HKVVILDEADSMTTGAQQALRRTM 139
           +EL  SD    D  +V+  IK  A+ +     G+  +KV++L+E D ++  AQ +LRRTM
Sbjct: 95  VELTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTM 154

Query: 140 EIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQAEKVPYVPEGL 199
           E YS++ R  L CN+SSK+ E I+SRC  VR +  + +EI+  L  V + E +  +P+G 
Sbjct: 155 EKYSSSCRLILCCNSSSKVTEAIKSRCLNVRINAPSQEEIVKVLEFVAKKESL-QLPQGF 214

Query: 200 EA-IIFTADGDMRQALNNLQ 215
            A I   ++  +R+A+ +L+
Sbjct: 215 AARIAEKSNRSLRRAILSLE 233

[Close]

BLAST of Cucsa.320140 vs. TAIR10
Match: AT5G22010.1 (AT5G22010.1 replication factor C1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-13
Identity = 66/253 (26.09%), Postives = 113/253 (44.66%), Query Frame = 1


Query: 13  IPWVEKYRPNKVTDIVGNEDAVSRL--------------------QVIARDGNMPNLILS 72
           +PW EKYRP    +IVGN+  V++L                    + +   G+   ++LS
Sbjct: 340 LPWTEKYRPKVPNEIVGNQSLVTQLHNWLSHWHDQFGGTGSKGKGKKLNDAGSKKAVLLS 399

Query: 73  GPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRG---IDVVR-------NKIKMFAQ 132
           G PG GKTTS   L  ++LG       +E+NASD RG    ++ +       N +K    
Sbjct: 400 GTPGIGKTTS-AKLVSQMLGFQ----AVEVNASDSRGKANSNIAKGIGGSNANSVKELVN 459

Query: 133 KK---VTLPPGRH--KVVILDEADSMTTGAQQALRRTM-EIYSNTTRFALACNTS-SKII 192
            +         +H   V+I+DE D M+ G +  +   +  I  +       CN   S+ +
Sbjct: 460 NEAMAANFDRSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKL 519

Query: 193 EPIQSRCAIVRFSRLTDQEILGRLMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQA 229
           + + + C  + + + T Q++  RLM + +AE +      LE +    +GD+R A+N LQ 
Sbjct: 520 KSLVNYCLPLNYRKPTKQQMAKRLMHIAKAEGLEINEIALEELAERVNGDIRLAVNQLQY 579

[Close]

BLAST of Cucsa.320140 vs. NCBI nr
Match: gi|449460473|ref|XP_004147970.1| (PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 659.4 bits (1700), Expect = 3.2e-186
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 1


Query: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240
           VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332
           HMRICDGVGSYLQLCGLLAKLSMVRETAKAP
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Cucsa.320140 vs. NCBI nr
Match: gi|659096165|ref|XP_008448956.1| (PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis melo])

HSP 1 Score: 654.1 bits (1686), Expect = 1.3e-184
Identity = 328/331 (99.09%), Postives = 330/331 (99.70%), Query Frame = 1


Query: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240
           VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KNVVRNVLEGKFDDAC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332
           HMRICDGVGSYLQLCGLLAKLSMVRETAKAP
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Cucsa.320140 vs. NCBI nr
Match: gi|951003244|ref|XP_014507551.1| (PREDICTED: replication factor C subunit 2 [Vigna radiata var. radiata])

HSP 1 Score: 620.9 bits (1600), Expect = 1.3e-174
Identity = 307/328 (93.60%), Postives = 321/328 (97.87%), Query Frame = 1


Query: 3   SSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTS 62
           SSS SS  YD+PWVEKYRPNKV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTS
Sbjct: 2   SSSSSSHTYDVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTS 61

Query: 63  ILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADS 122
           ILALAHELLGPN KEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHK+VILDEADS
Sbjct: 62  ILALAHELLGPNCKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADS 121

Query: 123 MTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVV 182
           MTTGAQQALRRTMEIYSN+TRFALACNTS+KIIEPIQSRCAIVRFSRL+DQEILGRLM+V
Sbjct: 122 MTTGAQQALRRTMEIYSNSTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMIV 181

Query: 183 IQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKN 242
           +QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGF+FVNQ NVFKVCDQPHPLHVKN
Sbjct: 182 VQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKN 241

Query: 243 VVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHM 302
           +VRNV+EG FDDAC+GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHM
Sbjct: 242 MVRNVIEGNFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHM 301

Query: 303 RICDGVGSYLQLCGLLAKLSMVRETAKA 331
           RICDGVGSYLQLCGLLAKLS+VRETAKA
Sbjct: 302 RICDGVGSYLQLCGLLAKLSLVRETAKA 329

[Close]

BLAST of Cucsa.320140 vs. NCBI nr
Match: gi|1012344408|gb|KYP55600.1| (Replication factor C subunit 2 [Cajanus cajan])

HSP 1 Score: 620.5 bits (1599), Expect = 1.6e-174
Identity = 308/330 (93.33%), Postives = 323/330 (97.88%), Query Frame = 1


Query: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
           M+SSS SSS YD+PWVEKYRPN+V DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MSSSSSSSSAYDVPWVEKYRPNRVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLGPNYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180
           DSMT+GAQQALRRTMEI+SNTTRFALACNTS+KIIEPIQSRCAIVRFSRL+DQEILGRLM
Sbjct: 121 DSMTSGAQQALRRTMEIFSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLM 180

Query: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240
           VV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGF+FVNQ NVFKVCDQPHPLHV
Sbjct: 181 VVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFQFVNQANVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KN+VRNV+EG FD+AC+GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKA 331
           HMRICDGVGSYLQLCGLLAKLS+VRETAKA
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSVVRETAKA 330

[Close]

BLAST of Cucsa.320140 vs. NCBI nr
Match: gi|802740932|ref|XP_012086977.1| (PREDICTED: replication factor C subunit 2 [Jatropha curcas])

HSP 1 Score: 619.4 bits (1596), Expect = 3.7e-174
Identity = 306/330 (92.73%), Postives = 324/330 (98.18%), Query Frame = 1


Query: 2   ASSSGSS-SNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 61
           +SS+GSS S YDIPWVEKYRPNK+ DIVGNED VSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 5   SSSAGSSTSGYDIPWVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKT 64

Query: 62  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 121
           TSILALAHELLGPNY+E VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHK+VILDEA
Sbjct: 65  TSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKLVILDEA 124

Query: 122 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 181
           DSMT+GAQQALRRTMEIYSN+TRFALACNTSSKIIEPIQSRCA+VRFSRL+DQEILGRLM
Sbjct: 125 DSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLM 184

Query: 182 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 241
           VV++AEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQ+NVFKVCDQPHPLHV
Sbjct: 185 VVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQENVFKVCDQPHPLHV 244

Query: 242 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 301
           KN+VR V+EGKFDDAC+GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 245 KNMVRQVIEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 304

Query: 302 HMRICDGVGSYLQLCGLLAKLSMVRETAKA 331
           HMRICDGVGSYLQLCGLLAKL++VRETAKA
Sbjct: 305 HMRICDGVGSYLQLCGLLAKLALVRETAKA 334

The following BLAST results are available for this feature:

BLAST of Cucsa.320140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RFC2_ARATH	3.8e-171	90.69	Replication factor C subunit 2 OS=Arabidopsis thaliana GN=RFC2 PE=1 SV=1	[more]
RFC4_ORYSJ	1.5e-164	86.45	Replication factor C subunit 4 OS=Oryza sativa subsp. japonica GN=RFC4 PE=2 SV=2	[more]
RFC2_BOVIN	2.9e-126	68.13	Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1	[more]
RFC2_HUMAN	3.7e-126	68.13	Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3	[more]
RFC2_RAT	1.4e-125	67.82	Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2 SV=1	[more]

BLAST of Cucsa.320140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L763_CUCSA	2.2e-186	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G038730 PE=4 SV=1	[more]
A0A151SLB0_CAJCA	1.1e-174	93.33	Replication factor C subunit 2 OS=Cajanus cajan GN=KK1_001819 PE=4 SV=1	[more]
A0A067JNM6_JATCU	2.6e-174	92.73	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20643 PE=4 SV=1	[more]
M5W470_PRUPE	1.7e-173	92.71	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008426mg PE=4 SV=1	[more]
V7CBL1_PHAVU	2.2e-173	92.68	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G211700g PE=4 SV=1	[more]

BLAST of Cucsa.320140 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G63160.1	2.1e-172	90.69	replication factor C 2	[more]
AT1G77470.1	4.5e-53	36.65	replication factor C subunit 3	[more]
AT1G21690.3	4.6e-50	42.14	ATPase family associated with various cellular activities (AAA)	[more]
AT5G27740.1	9.1e-14	36.43	ATPase family associated with various cellular activities (AAA)	[more]
AT5G22010.1	2.0e-13	26.09	replication factor C1	[more]

BLAST of Cucsa.320140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460473\|ref\|XP_004147970.1\|	3.2e-186	100.00	PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis sativus]	[more]
gi\|659096165\|ref\|XP_008448956.1\|	1.3e-184	99.09	PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis melo]	[more]
gi\|951003244\|ref\|XP_014507551.1\|	1.3e-174	93.60	PREDICTED: replication factor C subunit 2 [Vigna radiata var. radiata]	[more]
gi\|1012344408\|gb\|KYP55600.1\|	1.6e-174	93.33	Replication factor C subunit 2 [Cajanus cajan]	[more]
gi\|802740932\|ref\|XP_012086977.1\|	3.7e-174	92.73	PREDICTED: replication factor C subunit 2 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003593	AAA+_ATPase
IPR003959	ATPase_AAA_core
IPR008921	DNA_pol3_clamp-load_cplx_C
IPR013748	Rep_factorC_C
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006260	DNA replication

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0006260	DNA replication
cellular_component	GO:0042575	DNA polymerase complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.320140.1	Cucsa.320140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 45..177 score: 5.6
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 49..167 score: 1.3
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	unknown	SSF48019	post-AAA+ oligomerization domain-like	coord: 234..325 score: 2.75
IPR013748	Replication factor C, C-terminal	PFAM	PF08542	Rep_fac_C	coord: 235..320 score: 2.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 14..170 score: 1.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..233 score: 6.8
None	No IPR available	GENE3D	G3DSA:1.10.8.60		coord: 171..235 score: 3.9
None	No IPR available	GENE3D	G3DSA:1.20.272.10		coord: 236..326 score: 1.3
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 1..326 score: 4.5E
None	No IPR available	PANTHER	PTHR11669:SF5	REPLICATION FACTOR C SUBUNIT 2	coord: 1..326 score: 4.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.320140	Cla001144	Watermelon (97103) v1	cgywmB584
Cucsa.320140	Csa3G038730	Cucumber (Chinese Long) v2	cgycuB458
Cucsa.320140	MELO3C014020	Melon (DHL92) v3.5.1	cgymeB532
Cucsa.320140	ClCG10G003520	Watermelon (Charleston Gray)	cgywcgB556
Cucsa.320140	ClCG00G000260	Watermelon (Charleston Gray)	cgywcgB554
Cucsa.320140	CSPI03G03470	Wild cucumber (PI 183967)	cgycpiB484
Cucsa.320140	CmaCh16G010200	Cucurbita maxima (Rimu)	cgycmaB0888
Cucsa.320140	CmoCh16G010590	Cucurbita moschata (Rifu)	cgycmoB0886
Cucsa.320140	Lsi07G013830	Bottle gourd (USVL1VR-Ls)	cgylsiB530
Cucsa.320140	Cp4.1LG14g08300	Cucurbita pepo (Zucchini)	cgycpeB0846
Cucsa.320140	MELO3C014020.2	Melon (DHL92) v3.6.1	cgymedB533
Cucsa.320140	CsaV3_3G003530	Cucumber (Chinese Long) v3	cgycucB499
Cucsa.320140	Cla97C10G188060	Watermelon (97103) v2	cgywmbB562
Cucsa.320140	Bhi11G000292	Wax gourd	cgywgoB647

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.320140	Silver-seed gourd	carcgyB0990
Cucsa.320140	Cucurbita maxima (Rimu)	cgycmaB0897
Cucsa.320140	Cucurbita moschata (Rifu)	cgycmoB0893
Cucsa.320140	Cucurbita pepo (Zucchini)	cgycpeB0857