Cucsa.318880.1 (mRNA) Cucumber (Gy14) v1

Overview
NameCucsa.318880.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold03076 : 361181 .. 361346 (-)
Sequence length166
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTAGCTCTCAAGCCTGGCGAAGGCGAAAGCTCTTAGGCGGCCACTGCGAATGTTCTGAGAAACAAGCCTTCGGAATTGTCATCATCAACACGCAATCCAAATCATTCAAACAACAAAACATGGTGCAAATTTTAACTAAATTCAAGTATATAAAAAGAATTTAA

mRNA sequence

CATTAGCTCTCAAGCCTGGCGAAGGCGAAAGCTCTTAGGCGGCCACTGCGAATGTTCTGAGAAACAAGCCTTCGGAATTGTCATCATCAACACGCAATCCAAATCATTCAAACAACAAAACATGGTGCAAATTTTAACTAAATTCAAGTATATAAAAAGAATTTAA

Coding sequence (CDS)

CATTAGCTCTCAAGCCTGGCGAAGGCGAAAGCTCTTAGGCGGCCACTGCGAATGTTCTGAGAAACAAGCCTTCGGAATTGTCATCATCAACACGCAATCCAAATCATTCAAACAACAAAACATGGTGCAAATTTTAACTAAATTCAAGTATATAAAAAGAATTTAA

Protein sequence

ISSQAWRRRKLLGGHCECSEKQAFGIVIINTQSKSFKQQNMVQILTKFKYIKRI*
Homology
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BLAST of Cucsa.318880.1 vs. NCBI nr
Match: gi|296082540|emb|CBI21545.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-06
Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 1 

Query: 2  SSQAWRRRKLLGGHCECSEKQAFGIVIINTQSKSFKQQ 40
          +SQAW+RRKLLGG+CEC EKQAFG+VII+ ++++  +Q
Sbjct: 20 NSQAWQRRKLLGGYCECFEKQAFGVVIIDIETQNLDKQ 57

The following BLAST results are available for this feature:
BLAST of Cucsa.318880.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|296082540|emb|CBI21545.3|4.1e-0663.16unnamed protein product [Vitis vinifera][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsa.318880Cucsa.318880gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsa.318880.1Cucsa.318880.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.318880.1.CDS.1Cucsa.318880.1.CDS.1CDS