Cucsa.318880 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.318880
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold03076 : 361181 .. 361346 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTAGCTCTCAAGCCTGGCGAAGGCGAAAGCTCTTAGGCGGCCACTGCGAATGTTCTGAGAAACAAGCCTTCGGAATTGTCATCATCAACACGCAATCCAAATCATTCAAACAACAAAACATGGTGCAAATTTTAACTAAATTCAAGTATATAAAAAGAATTTAA

mRNA sequence

CATTAGCTCTCAAGCCTGGCGAAGGCGAAAGCTCTTAGGCGGCCACTGCGAATGTTCTGAGAAACAAGCCTTCGGAATTGTCATCATCAACACGCAATCCAAATCATTCAAACAACAAAACATGGTGCAAATTTTAACTAAATTCAAGTATATAAAAAGAATTTAA

Coding sequence (CDS)

CATTAGCTCTCAAGCCTGGCGAAGGCGAAAGCTCTTAGGCGGCCACTGCGAATGTTCTGAGAAACAAGCCTTCGGAATTGTCATCATCAACACGCAATCCAAATCATTCAAACAACAAAACATGGTGCAAATTTTAACTAAATTCAAGTATATAAAAAGAATTTAA

Protein sequence

ISSQAWRRRKLLGGHCECSEKQAFGIVIINTQSKSFKQQNMVQILTKFKYIKRI*
Homology
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BLAST of Cucsa.318880 vs. NCBI nr
Match: gi|296082540|emb|CBI21545.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-06
Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 1 

Query: 2  SSQAWRRRKLLGGHCECSEKQAFGIVIINTQSKSFKQQ 40
          +SQAW+RRKLLGG+CEC EKQAFG+VII+ ++++  +Q
Sbjct: 20 NSQAWQRRKLLGGYCECFEKQAFGVVIIDIETQNLDKQ 57

The following BLAST results are available for this feature:
BLAST of Cucsa.318880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|296082540|emb|CBI21545.3|4.1e-0663.16unnamed protein product [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.318880.1Cucsa.318880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.318880Cucurbita pepo (Zucchini)cgycpeB0837
Cucsa.318880Bottle gourd (USVL1VR-Ls)cgylsiB520
Cucsa.318880Melon (DHL92) v3.6.1cgymedB525
Cucsa.318880Cucumber (Chinese Long) v3cgycucB495
Cucsa.318880Watermelon (97103) v2cgywmbB556
Cucsa.318880Wax gourdcgywgoB638
Cucsa.318880Cucurbita maxima (Rimu)cgycmaB0881
Cucsa.318880Cucurbita moschata (Rifu)cgycmoB0878
Cucsa.318880Wild cucumber (PI 183967)cgycpiB481
Cucsa.318880Cucumber (Chinese Long) v2cgycuB456
Cucsa.318880Melon (DHL92) v3.5.1cgymeB524
Cucsa.318880Watermelon (Charleston Gray)cgywcgB551
Cucsa.318880Watermelon (97103) v1cgywmB580