Cucsa.289160.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.289160.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Superoxide dismutase [Cu-Zn]
Location	scaffold02698 : 645362 .. 648193 (-)
Sequence length	1154

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGTTTTAGCTCCTTCTAATTAATTATGTTTTTCTCGAAATTTTACATGTATTCAGCTTAAATTATTGGTTACATGCTTCCCGATGATGTGATTCCGCCTTCTATTAGTGGGATTTTGTACTGTTAATTGCGCATCATGACTGTGTTGGTTGTTTTTGTTCATTATTCCATGTCGTTGACTGATTTTAGATTGTATTGAACTTGTGGGTACTCTTAATAATCGGTCTAATTTTATACCCACCTTACAGAATTTTGAGCTTGGTCTTGTTTTTTCGTTTTTTTCTTTGAAGTGATGTGCTTTTTTTGTTGAGCTTGTTTTCTTGTGTGTTCTCTTGTATATATTCTTTCATTTCTGTCAATGAAAGAGGGTTTTTTTTTGTAAAAATACATTGCTCGACTAATTATTTTGGTCCTTTCTGCACATGAGTTGAAGTTATGAATTGCCAAAATGATGTTTCGTGTGAAGGATATCGTAATTGGGTGGTGTCGTATTCTTAATTCATTGGTTTCTTTTGTTGATCTCATGTTTTTGTTGGTTTTATTCTAATTATGTTGAAGTGTGTTAGATCACAGGAAAGATGGTGAAGGCTGTGGCTGTTCTTGGAAGTAGTGAGGGTGTTAGTGGAACTATCTTTTTCACCCAAGAAGGAGACGGTAATCTGGTTAATGGTTTCGTGTAGACGGTCTATGTTCATTTCTTTTCTATCTTGTACTTAGTCCAAAGAGTTTTCAGGTCCAACCACTGTTACGGGTAATGTTTCTGGTCTCAAGCCCGGGCTTCATGGATTCCATGTTCACGCCTTAGGTGACACAACCAATGGCTGCATGTCGACTGGTATCTTTTTAGACATTTAAGATCTTTTATTTGGTCTTTCTATTTTGAAGGAACGTAGATGTTTGTTAAAAAATTGAATATAGATCCTTTCGTTTATCTCAACATTAAAATTTCTCAAAATATTTACAGGGCCACATTTCAACCCTGCTGGAAAACAACATGGTGCTCCCGAGGACGAGAACCGCCATGCCGGTGATTTAGGGAACATTATCGTTGGTGAAGATGGTATGTTTCTCATTCTTTAACAATTCATTGAATAAGTTTTATTCTTGTCGTGTTGTGCTCCATTTCCTTTTTTGTATATCTTTTACATTATAATGGCTTAAGGTATATTTGTAAAAGTATGCTATTTTGTGTTGTTTTAGATTTCTCCTTTATATTTAGCTAATTTGATGTTGGATTTCATACCTTATTCAAACATTGTTCTATTGATATACTGGTTAAATGCTAATACAATATTTTGTACAGGCAAGGCTAACTTCACCATTACTGACTGCCAGGTTTGTCCCTATTTAATTCATCGTGTTAGGGCATCCAATTGTAAGGGTCTTACTCCTTTTTCTGAGCTTTAGATCATATATGCAGATTCCTCTCTGTGGACATGAATCCATTATCGGAAGGGCTGTTGTGGTTCATGGAGACCCTGATGATCTTGGCAAGGGTAATTTCTCTAACCATTTGCTACTTGATAGTTCTTTGAGCTTTTACAAGTAGTATATTTCTGGGCTATATCTACCATATTCAAACCCAAAAGAAAAGTACTATCAATTAGCTAGGCTGTACAATAGAGAAGTGACTGTTTTTGGAATATTTTGTAGTGAGAATCTCCCTTGTTTTGCATTTTTTCTTTACATCTATAATGCTTATGAACGTGCTTGTAGAAAGGTAGTATGGCTAGAGTAGTTATGTAACAGAGTTCAAATGATTAAATGGGGCAATTAGAACACACAAAACATAAAAGATGATTGGTTGGTTGACGATTATTGATAGATAGTACGGAGGATATCAGAACCAACTTTAAGAGAGCAATAAAAAGAATACTGCATTTAAATGCTTTCTTGAGGTTGTATTCCCTTTATGGAGATATTGGGTGTTCCATGCTTTCTGATATTTGGCATAAGGTCGAGGTGATAGTTTGTGAATATTAATACTTTCATACATATTCACTCTTCGGCTGTTGGGTTTGGAAACTTGAAAAAGCAATTATCAATATTTAAAAGGGGGAAATAACATGGTAGGGATCAGATATAGGACTGACAACCATGTTCAACTATCACTGCCGTCTAAAATGCTTGAGCTAATATGATAGCTAATGGGAAGGATAAGTTTAAGTATTATTCACTCTAAACTTTCAAGTTTGAAGTAATACTATGTAGCTTCTGAAAAAAAATTATGTCATCCAGAAGAGCTTTGTGAGAAAGCTTTTGTAGAGTGATCTATTGACTCAGGTGCACCCAAATGTGCTTTTAAGATTGCAAAGTATTAATTATTCTTAATATTAAACACATTTTATTATTGTATTTTTGCTCAAAGTACCCTAAAGCATTCTGAAATTGTACCTTTTTATGCATATTCTTATCAGTGGTCATTTTTGACATACAGGTGGACATGAACTCAGCTCAAGTACAGGAAATGCTGGTGCTAGAGTAGCCTGTGGTATGCGAATTCGGTTCCTAAGAAATATTACTTTTTCTTCCATTCTACAATTCCCTTTTCAAAGTTATCTGCCGTTCTCCATATTTCTTGATTGCATTTGTTGTCGTTTTATTTCCAGGCATTATTGGTCTGCAAGGTTAAAATTTGTTGCCTTCGTTGCCGTTACTGTTGAAGCATTGAACCCAAGTGCTCTCTAGTGCTTCCAGGAATATTCCTAAACTCTCGTGAATGAATAAAAACACATCACTGTACCTTTTCTTCTTTTGTGACGATTAGATCTTTCACTTATCCATACTTGTCTGCTGTTTTATTAATATATTTCTGGAAATTTGGTTTCTTT

mRNA sequence

GCTGTTTTAGCTCCTTCTAATTAATTATGTTTTTCTCGAAATTTTACATGTATTCAGCTTAAATTATTGGTTACATGCTTCCCGATGATGTGATTCCGCCTTCTATTAGTGGGATTTTGTACTGTTAATTGCGCATCATGACTGTGTTGGTTGTTTTTGTTCATTATTCCATGTCGTTGACTGATTTTAGATTGTATTGAACTTGTGGGTACTCTTAATAATCGGTCTAATTTTATACCCACCTTACAGaattttgagcttggtcttgttttttcgtttttttctttgaagtgatgtgctttttttgttgagcttgttttcttgtgtgttctcttgtatatattctttcatttctgtcaatgaaagagggttttttTTTGTAAAAATACATTGCTCGACTAATTATTTTGGTCCTTTCTGCACATGAGTTGAAGTTATGAATTGCCAAAATGATGTTTCGTGTGAAGGATATCGTAATTGGGTGATCACAGGAAAGATGGTGAAGGCTGTGGCTGTTCTTGGAAGTAGTGAGGGTGTTAGTGGAACTATCTTTTTCACCCAAGAAGGAGACGGTCCAACCACTGTTACGGGTAATGTTTCTGGTCTCAAGCCCGGGCTTCATGGATTCCATGTTCACGCCTTAGGTGACACAACCAATGGCTGCATGTCGACTGGGCCACATTTCAACCCTGCTGGAAAACAACATGGTGCTCCCGAGGACGAGAACCGCCATGCCGGTGATTTAGGGAACATTATCGTTGGTGAAGATGGCAAGGCTAACTTCACCATTACTGACTGCCAGATTCCTCTCTGTGGACATGAATCCATTATCGGAAGGGCTGTTGTGGTTCATGGAGACCCTGATGATCTTGGCAAGGGTGGACATGAACTCAGCTCAAGTACAGGAAATGCTGGTGCTAGAGTAGCCTGTGGCATTATTGGTCTGCAAGGTTAAAATTTGTTGCCTTCGTTGCCGTTACTGTTGAAGCATTGAACCCAAGTGCTCTCTAGTGCTTCCAGGAATATTCCTAAACTCTCGTGAATGAATAAAAACACATCACTGTACCTTTTCTTCTTTTGTGACGATTAGATCTTTCACTTATCCATACTTGTCTGCTGTTTTATTAATATATTTCTGGAAATTTGGTTTCTTT

Coding sequence (CDS)

ATGAATTGCCAAAATGATGTTTCGTGTGAAGGATATCGTAATTGGGTGATCACAGGAAAGATGGTGAAGGCTGTGGCTGTTCTTGGAAGTAGTGAGGGTGTTAGTGGAACTATCTTTTTCACCCAAGAAGGAGACGGTCCAACCACTGTTACGGGTAATGTTTCTGGTCTCAAGCCCGGGCTTCATGGATTCCATGTTCACGCCTTAGGTGACACAACCAATGGCTGCATGTCGACTGGGCCACATTTCAACCCTGCTGGAAAACAACATGGTGCTCCCGAGGACGAGAACCGCCATGCCGGTGATTTAGGGAACATTATCGTTGGTGAAGATGGCAAGGCTAACTTCACCATTACTGACTGCCAGATTCCTCTCTGTGGACATGAATCCATTATCGGAAGGGCTGTTGTGGTTCATGGAGACCCTGATGATCTTGGCAAGGGTGGACATGAACTCAGCTCAAGTACAGGAAATGCTGGTGCTAGAGTAGCCTGTGGCATTATTGGTCTGCAAGGTTAA

Protein sequence

MNCQNDVSCEGYRNWVITGKMVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHGDPDDLGKGGHELSSSTGNAGARVACGIIGLQG*

Homology

[Close]

BLAST of Cucsa.289160.2 vs. Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 286.6 bits (732), Expect = 1.8e-76
Identity = 137/152 (90.13%), Postives = 142/152 (93.42%), Query Frame = 1


Query: 21  MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 80
           MVKAVAVL SSEGVSGTIFF+QEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 81  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 140
           PHFNPAGK+HGAP D+NRHAGDLGNI VGEDG A+FTITD QIPL G  S+IGRAVVVHG
Sbjct: 61  PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHG 120

Query: 141 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 173
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cucsa.289160.2 vs. Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 281.2 bits (718), Expect = 7.7e-75
Identity = 134/152 (88.16%), Postives = 141/152 (92.76%), Query Frame = 1


Query: 21  MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 80
           MVKAVAVL SSEGVSGTIFFTQ+GD PTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 81  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 140
           PH+NPAGK+HGAPEDE RHAGDLGNI VGEDG A+FT+TD QIPL G +SIIGRAVVVH 
Sbjct: 61  PHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHA 120

Query: 141 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 173
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cucsa.289160.2 vs. Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 278.9 bits (712), Expect = 3.8e-74
Identity = 132/152 (86.84%), Postives = 137/152 (90.13%), Query Frame = 1


Query: 21  MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 80
           MVKAVAVLGSSEGV GTIFFTQEGDGPTTVTG+VSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 81  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 140
           PH+NPA K+HGAPEDENRHAGDLGN+  G DG AN  +TD QIPL G  SIIGRAVVVH 
Sbjct: 61  PHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHA 120

Query: 141 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 173
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cucsa.289160.2 vs. Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.9e-73
Identity = 130/152 (85.53%), Postives = 136/152 (89.47%), Query Frame = 1


Query: 21  MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 80
           MVKAVAVLGSSEGV GTI+FTQEGDGPTTVTG++SGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 81  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 140
           PHFNPAG +HGAPEDE RHAGDLGN+ VGEDG  N  I D QIPL G  SIIGRAVVVH 
Sbjct: 61  PHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHA 120

Query: 141 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 173
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cucsa.289160.2 vs. Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 275.8 bits (704), Expect = 3.3e-73
Identity = 130/152 (85.53%), Postives = 136/152 (89.47%), Query Frame = 1


Query: 21  MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 80
           MVKAVAVLGSS+GV GTIFFTQEGDGPT VTG+VSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 81  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 140
           PH+NPA K+HGAPEDENRHAGDLGN+  G DG AN  +TD QIPL G  SIIGRAVVVH 
Sbjct: 61  PHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHA 120

Query: 141 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 173
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cucsa.289160.2 vs. TrEMBL
Match: B1PE19_CUCSA (Superoxide dismutase [Cu-Zn] OS=Cucumis sativus GN=SOD PE=2 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 2.9e-84
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 21  MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 80
           MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 81  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 140
           PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120

Query: 141 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 173
           DPDDLGKGGHELSSSTGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 152

[Close]

BLAST of Cucsa.289160.2 vs. TrEMBL
Match: A0A0S2LL33_CUCME (Superoxide dismutase [Cu-Zn] OS=Cucumis melo PE=2 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.3e-78
Identity = 145/152 (95.39%), Postives = 146/152 (96.05%), Query Frame = 1


Query: 21  MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 80
           MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPG HGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCMSTG 60

Query: 81  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 140
           PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDG ANFTITD QI LCG +SIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGTANFTITDNQISLCGKDSIIGRAVVVHG 120

Query: 141 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 173
           DPDDLGKGGHELS STGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152

[Close]

BLAST of Cucsa.289160.2 vs. TrEMBL
Match: A0A0U2DB27_LUFAE (Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca PE=2 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.6e-77
Identity = 141/152 (92.76%), Postives = 145/152 (95.39%), Query Frame = 1


Query: 21  MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 80
           MVK VAVLGSSEGVSGTIFF+QEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKGVAVLGSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 81  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 140
           PHFNPAGKQHGAPEDENRHAGDLGNI VGEDGKA+FTI+DCQIPL G  SIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTISDCQIPLSGPNSIIGRAVVVHG 120

Query: 141 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 173
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cucsa.289160.2 vs. TrEMBL
Match: A0A0S2PZD2_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SOD PE=2 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.1e-74
Identity = 137/152 (90.13%), Postives = 142/152 (93.42%), Query Frame = 1


Query: 21  MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 80
           MVKAVAVL SSEGVSGTIFF+QEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 81  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 140
           PHFNPAGK+HGAP D+NRHAGDLGNI VGEDG A+FTITD QIPL G  S+IGRAVVVHG
Sbjct: 61  PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHG 120

Query: 141 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 173
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cucsa.289160.2 vs. TrEMBL
Match: A0A142L027_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.5e-74
Identity = 136/152 (89.47%), Postives = 141/152 (92.76%), Query Frame = 1


Query: 21  MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 80
           MVKAVAVL SSEGV GTIFFTQ+GDGPTTVTGN+SGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVKGTIFFTQDGDGPTTVTGNISGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 81  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 140
           PHFNPAGK+HGAP+DENRHAGDLGNI VGEDG A+FTITD QIPL G  SIIGRAVVVH 
Sbjct: 61  PHFNPAGKEHGAPDDENRHAGDLGNITVGEDGTASFTITDKQIPLTGAHSIIGRAVVVHA 120

Query: 141 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 173
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cucsa.289160.2 vs. TAIR10
Match: AT1G08830.1 (AT1G08830.1 copper/zinc superoxide dismutase 1)

HSP 1 Score: 273.5 bits (698), Expect = 9.1e-74
Identity = 130/152 (85.53%), Postives = 135/152 (88.82%), Query Frame = 1


Query: 21  MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 80
           M K VAVL SSEGV+GTIFFTQEGDG TTV+G VSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 81  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 140
           PHFNP GK HGAPED NRHAGDLGNI VG+DG A FTITDCQIPL G  SI+GRAVVVH 
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 141 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 173
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cucsa.289160.2 vs. TAIR10
Match: AT5G18100.1 (AT5G18100.1 copper/zinc superoxide dismutase 3)

HSP 1 Score: 208.0 bits (528), Expect = 4.7e-54
Identity = 95/150 (63.33%), Postives = 112/150 (74.67%), Query Frame = 1


Query: 22  VKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGP 81
           ++AVA++     V G + F Q+  G T VTG +SGL PG HGFH+H+ GDTTNGC+STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 82  HFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHGD 141
           HFNP  + HG P +E RHAGDLGNI+ G +G A   I D  IPL G  SI+GRAVVVH D
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 142 PDDLGKGGHELSSSTGNAGARVACGIIGLQ 172
           PDDLGKGGH+LS STGNAG+RV CGIIGLQ
Sbjct: 128 PDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157

[Close]

BLAST of Cucsa.289160.2 vs. TAIR10
Match: AT2G28190.1 (AT2G28190.1 copper/zinc superoxide dismutase 2)

HSP 1 Score: 200.3 bits (508), Expect = 9.8e-52
Identity = 96/148 (64.86%), Postives = 108/148 (72.97%), Query Frame = 1


Query: 23  KAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPH 82
           KAVAVL  +  V G +  TQ+  GPTTV   ++GL PG HGFH+H  GDTTNGC+STGPH
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPH 125

Query: 83  FNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHGDP 142
           FNP    HGAPEDE RHAGDLGNI    DG A  TI D QIPL G  S++GRA VVH   
Sbjct: 126 FNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELK 185

Query: 143 DDLGKGGHELSSSTGNAGARVACGIIGL 171
           DDLGKGGHELS +TGNAG R+ACG+IGL
Sbjct: 186 DDLGKGGHELSLTTGNAGGRLACGVIGL 213

[Close]

BLAST of Cucsa.289160.2 vs. NCBI nr
Match: gi|525507314|ref|NP_001267697.1| (superoxide dismutase [Cu-Zn])

HSP 1 Score: 319.3 bits (817), Expect = 4.1e-84
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 21  MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 80
           MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 81  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 140
           PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120

Query: 141 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 173
           DPDDLGKGGHELSSSTGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 152

[Close]

BLAST of Cucsa.289160.2 vs. NCBI nr
Match: gi|659099705|ref|XP_008450736.1| (PREDICTED: superoxide dismutase [Cu-Zn])

HSP 1 Score: 299.7 bits (766), Expect = 3.4e-78
Identity = 145/152 (95.39%), Postives = 146/152 (96.05%), Query Frame = 1


Query: 21  MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 80
           MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPG HGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCMSTG 60

Query: 81  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 140
           PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDG ANFTITD QI LCG +SIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGTANFTITDNQISLCGKDSIIGRAVVVHG 120

Query: 141 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 173
           DPDDLGKGGHELS STGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152

[Close]

BLAST of Cucsa.289160.2 vs. NCBI nr
Match: gi|844289602|gb|AKN08991.1| (superoxide dismutase [Luffa aegyptiaca])

HSP 1 Score: 296.2 bits (757), Expect = 3.7e-77
Identity = 141/152 (92.76%), Postives = 145/152 (95.39%), Query Frame = 1


Query: 21  MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 80
           MVK VAVLGSSEGVSGTIFF+QEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKGVAVLGSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 81  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 140
           PHFNPAGKQHGAPEDENRHAGDLGNI VGEDGKA+FTI+DCQIPL G  SIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTISDCQIPLSGPNSIIGRAVVVHG 120

Query: 141 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 173
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cucsa.289160.2 vs. NCBI nr
Match: gi|586004|sp|Q07796.2|SODC_IPOBA (RecName: Full=Superoxide dismutase [Cu-Zn])

HSP 1 Score: 286.6 bits (732), Expect = 2.9e-74
Identity = 137/152 (90.13%), Postives = 142/152 (93.42%), Query Frame = 1


Query: 21  MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 80
           MVKAVAVL SSEGVSGTIFF+QEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 81  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 140
           PHFNPAGK+HGAP D+NRHAGDLGNI VGEDG A+FTITD QIPL G  S+IGRAVVVHG
Sbjct: 61  PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHG 120

Query: 141 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 173
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cucsa.289160.2 vs. NCBI nr
Match: gi|1012306281|gb|AMS25554.1| (CuSOD [Ipomoea batatas])

HSP 1 Score: 285.8 bits (730), Expect = 5.0e-74
Identity = 136/152 (89.47%), Postives = 141/152 (92.76%), Query Frame = 1


Query: 21  MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 80
           MVKAVAVL SSEGV GTIFFTQ+GDGPTTVTGN+SGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVKGTIFFTQDGDGPTTVTGNISGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 81  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 140
           PHFNPAGK+HGAP+DENRHAGDLGNI VGEDG A+FTITD QIPL G  SIIGRAVVVH 
Sbjct: 61  PHFNPAGKEHGAPDDENRHAGDLGNITVGEDGTASFTITDKQIPLTGAHSIIGRAVVVHA 120

Query: 141 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 173
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

The following BLAST results are available for this feature:

BLAST of Cucsa.289160.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SODC_IPOBA	1.8e-76	90.13	Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2	[more]
SODC_NICPL	7.7e-75	88.16	Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2	[more]
SODC4_MAIZE	3.8e-74	86.84	Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2	[more]
SODC_ANACO	1.9e-73	85.53	Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1	[more]
SODC5_MAIZE	3.3e-73	85.53	Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2	[more]

BLAST of Cucsa.289160.2 vs. TrEMBL


Match Name	E-value	Identity	Description
B1PE19_CUCSA	2.9e-84	100.00	Superoxide dismutase [Cu-Zn] OS=Cucumis sativus GN=SOD PE=2 SV=1	[more]
A0A0S2LL33_CUCME	2.3e-78	95.39	Superoxide dismutase [Cu-Zn] OS=Cucumis melo PE=2 SV=1	[more]
A0A0U2DB27_LUFAE	2.6e-77	92.76	Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca PE=2 SV=1	[more]
A0A0S2PZD2_IPOBA	2.1e-74	90.13	Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SOD PE=2 SV=1	[more]
A0A142L027_IPOBA	3.5e-74	89.47	Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas PE=2 SV=1	[more]

BLAST of Cucsa.289160.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08830.1	9.1e-74	85.53	copper/zinc superoxide dismutase 1	[more]
AT5G18100.1	4.7e-54	63.33	copper/zinc superoxide dismutase 3	[more]
AT2G28190.1	9.8e-52	64.86	copper/zinc superoxide dismutase 2	[more]

BLAST of Cucsa.289160.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|525507314\|ref\|NP_001267697.1\|	4.1e-84	100.00	superoxide dismutase [Cu-Zn]	[more]
gi\|659099705\|ref\|XP_008450736.1\|	3.4e-78	95.39	PREDICTED: superoxide dismutase [Cu-Zn]	[more]
gi\|844289602\|gb\|AKN08991.1\|	3.7e-77	92.76	superoxide dismutase [Luffa aegyptiaca]	[more]
gi\|586004\|sp\|Q07796.2\|SODC_IPOBA	2.9e-74	90.13	RecName: Full=Superoxide dismutase [Cu-Zn]	[more]
gi\|1012306281\|gb\|AMS25554.1\|	5.0e-74	89.47	CuSOD [Ipomoea batatas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001424	SOD_Cu_Zn_dom
IPR018152	SOD_Cu/Zn_BS
IPR024134	SOD_Cu/Zn_/chaperone

Vocabulary: **Biological Process**
Term	Definition
GO:0006801	superoxide metabolic process
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0004784	superoxide dismutase activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006801	superoxide metabolic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006096	glycolytic process
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0046686	response to cadmium ion
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004784	superoxide dismutase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.289160	Cucsa.289160	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.289160.2	Cucsa.289160.2-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.289160.2.CDS.8	Cucsa.289160.2.CDS.8	CDS
Cucsa.289160.2.CDS.7	Cucsa.289160.2.CDS.7	CDS
Cucsa.289160.2.CDS.6	Cucsa.289160.2.CDS.6	CDS
Cucsa.289160.2.CDS.5	Cucsa.289160.2.CDS.5	CDS
Cucsa.289160.2.CDS.4	Cucsa.289160.2.CDS.4	CDS
Cucsa.289160.2.CDS.3	Cucsa.289160.2.CDS.3	CDS
Cucsa.289160.2.CDS.2	Cucsa.289160.2.CDS.2	CDS
Cucsa.289160.2.CDS.1	Cucsa.289160.2.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.289160.2.three_prime_UTR.1	Cucsa.289160.2.three_prime_UTR.1	three_prime_UTR

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.289160.2.five_prime_UTR.1	Cucsa.289160.2.five_prime_UTR.1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001424	Superoxide dismutase, copper/zinc binding domain	PRINTS	PR00068	CUZNDISMTASE	coord: 143..169 score: 1.2E-43coord: 63..85 score: 1.2E-43coord: 99..108 score: 1.2E-43coord: 118..140 score: 1.2
IPR001424	Superoxide dismutase, copper/zinc binding domain	GENE3D	G3DSA:2.60.40.200		coord: 20..170 score: 2.0
IPR001424	Superoxide dismutase, copper/zinc binding domain	PFAM	PF00080	Sod_Cu	coord: 32..168 score: 3.9
IPR001424	Superoxide dismutase, copper/zinc binding domain	unknown	SSF49329	Cu,Zn superoxide dismutase-like	coord: 21..170 score: 4.06
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00087	SOD_CU_ZN_1	coord: 63..73 scor
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00332	SOD_CU_ZN_2	coord: 157..168 scor
IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	PANTHER	PTHR10003	SUPEROXIDE DISMUTASE CU-ZN -RELATED	coord: 21..172 score: 8.0