Cucsa.289160 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.289160
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Superoxide dismutase [Cu-Zn]
Location	scaffold02698 : 645362 .. 648379 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGTCCTCTATATAAATTTCCAAAAGCCCTAAGCTTTCTTCATTTCTAGACTCTTCCTTCCATTCAATCTCACCTCTGCCTTCTCTTTCTTCTGTCCAAGGGGTGTTCTGAGGTCAGCTCTCTCTTTCCCATCATTTTTTTTGCCTTTCATATCCCTTGTTTTTCTTCAATTTGATCTGGGTTTAGCTGTTTTAGCTCCTTCTAATTAATTATGTTTTTCTCGAAATTTTACATGTATTCAGCTTAAATTATTGGTTACATGCTTCCCGATGATGTGATTCCGCCTTCTATTAGTGGGATTTTGTACTGTTAATTGCGCATCATGACTGTGTTGGTTGTTTTTGTTCATTATTCCATGTCGTTGACTGATTTTAGATTGTATTGAACTTGTGGGTACTCTTAATAATCGGTCTAATTTTATACCCACCTTACAGAATTTTGAGCTTGGTCTTGTTTTTTCGTTTTTTTCTTTGAAGTGATGTGCTTTTTTTGTTGAGCTTGTTTTCTTGTGTGTTCTCTTGTATATATTCTTTCATTTCTGTCAATGAAAGAGGGTTTTTTTTTGTAAAAATACATTGCTCGACTAATTATTTTGGTCCTTTCTGCACATGAGTTGAAGTTATGAATTGCCAAAATGATGTTTCGTGTGAAGGATATCGTAATTGGGTGGTGTCGTATTCTTAATTCATTGGTTTCTTTTGTTGATCTCATGTTTTTGTTGGTTTTATTCTAATTATGTTGAAGTGTGTTAGATCACAGGAAAGATGGTGAAGGCTGTGGCTGTTCTTGGAAGTAGTGAGGGTGTTAGTGGAACTATCTTTTTCACCCAAGAAGGAGACGGTAATCTGGTTAATGGTTTCGTGTAGACGGTCTATGTTCATTTCTTTTCTATCTTGTACTTAGTCCAAAGAGTTTTCAGGTCCAACCACTGTTACGGGTAATGTTTCTGGTCTCAAGCCCGGGCTTCATGGATTCCATGTTCACGCCTTAGGTGACACAACCAATGGCTGCATGTCGACTGGTATCTTTTTAGACATTTAAGATCTTTTATTTGGTCTTTCTATTTTGAAGGAACGTAGATGTTTGTTAAAAAATTGAATATAGATCCTTTCGTTTATCTCAACATTAAAATTTCTCAAAATATTTACAGGGCCACATTTCAACCCTGCTGGAAAACAACATGGTGCTCCCGAGGACGAGAACCGCCATGCCGGTGATTTAGGGAACATTATCGTTGGTGAAGATGGTATGTTTCTCATTCTTTAACAATTCATTGAATAAGTTTTATTCTTGTCGTGTTGTGCTCCATTTCCTTTTTTGTATATCTTTTACATTATAATGGCTTAAGGTATATTTGTAAAAGTATGCTATTTTGTGTTGTTTTAGATTTCTCCTTTATATTTAGCTAATTTGATGTTGGATTTCATACCTTATTCAAACATTGTTCTATTGATATACTGGTTAAATGCTAATACAATATTTTGTACAGGCAAGGCTAACTTCACCATTACTGACTGCCAGGTTTGTCCCTATTTAATTCATCGTGTTAGGGCATCCAATTGTAAGGGTCTTACTCCTTTTTCTGAGCTTTAGATCATATATGCAGATTCCTCTCTGTGGACATGAATCCATTATCGGAAGGGCTGTTGTGGTTCATGGAGACCCTGATGATCTTGGCAAGGGTAATTTCTCTAACCATTTGCTACTTGATAGTTCTTTGAGCTTTTACAAGTAGTATATTTCTGGGCTATATCTACCATATTCAAACCCAAAAGAAAAGTACTATCAATTAGCTAGGCTGTACAATAGAGAAGTGACTGTTTTTGGAATATTTTGTAGTGAGAATCTCCCTTGTTTTGCATTTTTTCTTTACATCTATAATGCTTATGAACGTGCTTGTAGAAAGGTAGTATGGCTAGAGTAGTTATGTAACAGAGTTCAAATGATTAAATGGGGCAATTAGAACACACAAAACATAAAAGATGATTGGTTGGTTGACGATTATTGATAGATAGTACGGAGGATATCAGAACCAACTTTAAGAGAGCAATAAAAAGAATACTGCATTTAAATGCTTTCTTGAGGTTGTATTCCCTTTATGGAGATATTGGGTGTTCCATGCTTTCTGATATTTGGCATAAGGTCGAGGTGATAGTTTGTGAATATTAATACTTTCATACATATTCACTCTTCGGCTGTTGGGTTTGGAAACTTGAAAAAGCAATTATCAATATTTAAAAGGGGGAAATAACATGGTAGGGATCAGATATAGGACTGACAACCATGTTCAACTATCACTGCCGTCTAAAATGCTTGAGCTAATATGATAGCTAATGGGAAGGATAAGTTTAAGTATTATTCACTCTAAACTTTCAAGTTTGAAGTAATACTATGTAGCTTCTGAAAAAAAATTATGTCATCCAGAAGAGCTTTGTGAGAAAGCTTTTGTAGAGTGATCTATTGACTCAGGTGCACCCAAATGTGCTTTTAAGATTGCAAAGTATTAATTATTCTTAATATTAAACACATTTTATTATTGTATTTTTGCTCAAAGTACCCTAAAGCATTCTGAAATTGTACCTTTTTATGCATATTCTTATCAGTGGTCATTTTTGACATACAGGTGGACATGAACTCAGCTCAAGTACAGGAAATGCTGGTGCTAGAGTAGCCTGTGGTATGCGAATTCGGTTCCTAAGAAATATTACTTTTTCTTCCATTCTACAATTCCCTTTTCAAAGTTATCTGCCGTTCTCCATATTTCTTGATTGCATTTGTTGTCGTTTTATTTCCAGGCATTATTGGTCTGCAAGGTTAAAATTTGTTGCCTTCGTTGCCGTTACTGTTGAAGCATTGAACCCAAGTGCTCTCTAGTGCTTCCAGGAATATTCCTAAACTCTCGTGAATGAATAAAAACACATCACTGTACCTTTTCTTCTTTTGTGACGATTAGATCTTTCACTTATCCATACTTGTCTGCTGTTTTATTAATATATTTCTGGAAATTTGGTTTCTTT

mRNA sequence

GGAGTCCTCTATATAAATTTCCAAAAGCCCTAAGCTTTCTTCATTTCTAGACTCTTCCTTCCATTCAATCTCACCTCTGCCTTCTCTTTCTTCTGTCCAAGGGGTGTTCTGAGTGTGTTAGATCACAGGAAAGATGGTGAAGGCTGTGGCTGTTCTTGGAAGTAGTGAGGGTGTTAGTGGAACTATCTTTTTCACCCAAGAAGGAGACGGTCCAACCACTGTTACGGGTAATGTTTCTGGTCTCAAGCCCGGGCTTCATGGATTCCATGTTCACGCCTTAGGTGACACAACCAATGGCTGCATGTCGACTGGGCCACATTTCAACCCTGCTGGAAAACAACATGGTGCTCCCGAGGACGAGAACCGCCATGCCGGTGATTTAGGGAACATTATCGTTGGTGAAGATGGCAAGGCTAACTTCACCATTACTGACTGCCAGATTCCTCTCTGTGGACATGAATCCATTATCGGAAGGGCTGTTGTGGTTCATGGAGACCCTGATGATCTTGGCAAGGGTGGACATGAACTCAGCTCAAGTACAGGAAATGCTGGTGCTAGAGTAGCCTGTGGCATTATTGGTCTGCAAGGTTAAAATTTGTTGCCTTCGTTGCCGTTACTGTTGAAGCATTGAACCCAAGTGCTCTCTAGTGCTTCCAGGAATATTCCTAAACTCTCGTGAATGAATAAAAACACATCACTGTACCTTTTCTTCTTTTGTGACGATTAGATCTTTCACTTATCCATACTTGTCTGCTGTTTTATTAATATATTTCTGGAAATTTGGTTTCTTT

Coding sequence (CDS)

ATGGTGAAGGCTGTGGCTGTTCTTGGAAGTAGTGAGGGTGTTAGTGGAACTATCTTTTTCACCCAAGAAGGAGACGGTCCAACCACTGTTACGGGTAATGTTTCTGGTCTCAAGCCCGGGCTTCATGGATTCCATGTTCACGCCTTAGGTGACACAACCAATGGCTGCATGTCGACTGGGCCACATTTCAACCCTGCTGGAAAACAACATGGTGCTCCCGAGGACGAGAACCGCCATGCCGGTGATTTAGGGAACATTATCGTTGGTGAAGATGGCAAGGCTAACTTCACCATTACTGACTGCCAGATTCCTCTCTGTGGACATGAATCCATTATCGGAAGGGCTGTTGTGGTTCATGGAGACCCTGATGATCTTGGCAAGGGTGGACATGAACTCAGCTCAAGTACAGGAAATGCTGGTGCTAGAGTAGCCTGTGGCATTATTGGTCTGCAAGGTTAA

Protein sequence

MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHGDPDDLGKGGHELSSSTGNAGARVACGIIGLQG*

Homology

[Close]

BLAST of Cucsa.289160 vs. Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 275.8 bits (704), Expect = 4.0e-73
Identity = 131/147 (89.12%), Postives = 137/147 (93.20%), Query Frame = 1


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVL SSEGVSGTIFF+QEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGK+HGAP D+NRHAGDLGNI VGEDG A+FTITD QIPL G  S+IGRAVVVHG
Sbjct: 61  PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGM 148
           DPDDLGKGGHELS STGNAG RVACG+
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGI 147

[Close]

BLAST of Cucsa.289160 vs. Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 270.4 bits (690), Expect = 1.7e-71
Identity = 128/147 (87.07%), Postives = 136/147 (92.52%), Query Frame = 1


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVL SSEGVSGTIFFTQ+GD PTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PH+NPAGK+HGAPEDE RHAGDLGNI VGEDG A+FT+TD QIPL G +SIIGRAVVVH 
Sbjct: 61  PHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGM 148
           DPDDLGKGGHELS +TGNAG RVACG+
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGI 147

[Close]

BLAST of Cucsa.289160 vs. Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 268.1 bits (684), Expect = 8.3e-71
Identity = 126/147 (85.71%), Postives = 132/147 (89.80%), Query Frame = 1


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGV GTIFFTQEGDGPTTVTG+VSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PH+NPA K+HGAPEDENRHAGDLGN+  G DG AN  +TD QIPL G  SIIGRAVVVH 
Sbjct: 61  PHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGM 148
           DPDDLGKGGHELS STGNAG RVACG+
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGI 147

[Close]

BLAST of Cucsa.289160 vs. Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 4.1e-70
Identity = 124/147 (84.35%), Postives = 131/147 (89.12%), Query Frame = 1


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGV GTI+FTQEGDGPTTVTG++SGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAG +HGAPEDE RHAGDLGN+ VGEDG  N  I D QIPL G  SIIGRAVVVH 
Sbjct: 61  PHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGM 148
           DPDDLGKGGHELS +TGNAG RVACG+
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGI 147

[Close]

BLAST of Cucsa.289160 vs. Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 265.0 bits (676), Expect = 7.0e-70
Identity = 124/147 (84.35%), Postives = 131/147 (89.12%), Query Frame = 1


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSS+GV GTIFFTQEGDGPT VTG+VSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PH+NPA K+HGAPEDENRHAGDLGN+  G DG AN  +TD QIPL G  SIIGRAVVVH 
Sbjct: 61  PHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGM 148
           DPDDLGKGGHELS STGNAG RVACG+
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGI 147

[Close]

BLAST of Cucsa.289160 vs. TrEMBL
Match: B1PE19_CUCSA (Superoxide dismutase [Cu-Zn] OS=Cucumis sativus GN=SOD PE=2 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 6.1e-81
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 1


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGM 148
           DPDDLGKGGHELSSSTGNAGARVACG+
Sbjct: 121 DPDDLGKGGHELSSSTGNAGARVACGI 147

[Close]

BLAST of Cucsa.289160 vs. TrEMBL
Match: A0A0S2LL33_CUCME (Superoxide dismutase [Cu-Zn] OS=Cucumis melo PE=2 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 5.0e-75
Identity = 139/147 (94.56%), Postives = 141/147 (95.92%), Query Frame = 1


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPG HGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDG ANFTITD QI LCG +SIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGTANFTITDNQISLCGKDSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGM 148
           DPDDLGKGGHELS STGNAGARVACG+
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGI 147

[Close]

BLAST of Cucsa.289160 vs. TrEMBL
Match: A0A0U2DB27_LUFAE (Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 5.6e-74
Identity = 135/147 (91.84%), Postives = 140/147 (95.24%), Query Frame = 1


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVK VAVLGSSEGVSGTIFF+QEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKGVAVLGSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNI VGEDGKA+FTI+DCQIPL G  SIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTISDCQIPLSGPNSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGM 148
           DPDDLGKGGHELS +TGNAG RVACG+
Sbjct: 121 DPDDLGKGGHELSLTTGNAGGRVACGI 147

[Close]

BLAST of Cucsa.289160 vs. TrEMBL
Match: A0A0S2PZD2_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SOD PE=2 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 4.4e-71
Identity = 131/147 (89.12%), Postives = 137/147 (93.20%), Query Frame = 1


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVL SSEGVSGTIFF+QEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGK+HGAP D+NRHAGDLGNI VGEDG A+FTITD QIPL G  S+IGRAVVVHG
Sbjct: 61  PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGM 148
           DPDDLGKGGHELS STGNAG RVACG+
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGI 147

[Close]

BLAST of Cucsa.289160 vs. TrEMBL
Match: A0A142L027_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 7.5e-71
Identity = 130/147 (88.44%), Postives = 136/147 (92.52%), Query Frame = 1


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVL SSEGV GTIFFTQ+GDGPTTVTGN+SGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVKGTIFFTQDGDGPTTVTGNISGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGK+HGAP+DENRHAGDLGNI VGEDG A+FTITD QIPL G  SIIGRAVVVH 
Sbjct: 61  PHFNPAGKEHGAPDDENRHAGDLGNITVGEDGTASFTITDKQIPLTGAHSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGM 148
           DPDDLGKGGHELS STGNAG RVACG+
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGI 147

[Close]

BLAST of Cucsa.289160 vs. TAIR10
Match: AT1G08830.1 (AT1G08830.1 copper/zinc superoxide dismutase 1)

HSP 1 Score: 262.7 bits (670), Expect = 2.0e-70
Identity = 124/147 (84.35%), Postives = 130/147 (88.44%), Query Frame = 1


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           M K VAVL SSEGV+GTIFFTQEGDG TTV+G VSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNP GK HGAPED NRHAGDLGNI VG+DG A FTITDCQIPL G  SI+GRAVVVH 
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGM 148
           DPDDLGKGGHELS +TGNAG RVACG+
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGI 147

[Close]

BLAST of Cucsa.289160 vs. TAIR10
Match: AT5G18100.1 (AT5G18100.1 copper/zinc superoxide dismutase 3)

HSP 1 Score: 199.5 bits (506), Expect = 2.0e-51
Identity = 90/146 (61.64%), Postives = 108/146 (73.97%), Query Frame = 1


Query: 2   VKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGP 61
           ++AVA++     V G + F Q+  G T VTG +SGL PG HGFH+H+ GDTTNGC+STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHGD 121
           HFNP  + HG P +E RHAGDLGNI+ G +G A   I D  IPL G  SI+GRAVVVH D
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGKGGHELSSSTGNAGARVACGM 148
           PDDLGKGGH+LS STGNAG+RV CG+
Sbjct: 128 PDDLGKGGHKLSKSTGNAGSRVGCGI 153

[Close]

BLAST of Cucsa.289160 vs. TAIR10
Match: AT2G28190.1 (AT2G28190.1 copper/zinc superoxide dismutase 2)

HSP 1 Score: 194.1 bits (492), Expect = 8.6e-50
Identity = 93/145 (64.14%), Postives = 105/145 (72.41%), Query Frame = 1


Query: 3   KAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPH 62
           KAVAVL  +  V G +  TQ+  GPTTV   ++GL PG HGFH+H  GDTTNGC+STGPH
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPH 125

Query: 63  FNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHGDP 122
           FNP    HGAPEDE RHAGDLGNI    DG A  TI D QIPL G  S++GRA VVH   
Sbjct: 126 FNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELK 185

Query: 123 DDLGKGGHELSSSTGNAGARVACGM 148
           DDLGKGGHELS +TGNAG R+ACG+
Sbjct: 186 DDLGKGGHELSLTTGNAGGRLACGV 210

[Close]

BLAST of Cucsa.289160 vs. NCBI nr
Match: gi|525507314|ref|NP_001267697.1| (superoxide dismutase [Cu-Zn])

HSP 1 Score: 308.5 bits (789), Expect = 8.8e-81
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 1


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGM 148
           DPDDLGKGGHELSSSTGNAGARVACG+
Sbjct: 121 DPDDLGKGGHELSSSTGNAGARVACGI 147

[Close]

BLAST of Cucsa.289160 vs. NCBI nr
Match: gi|659099705|ref|XP_008450736.1| (PREDICTED: superoxide dismutase [Cu-Zn])

HSP 1 Score: 288.9 bits (738), Expect = 7.2e-75
Identity = 139/147 (94.56%), Postives = 141/147 (95.92%), Query Frame = 1


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPG HGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDG ANFTITD QI LCG +SIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGTANFTITDNQISLCGKDSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGM 148
           DPDDLGKGGHELS STGNAGARVACG+
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGI 147

[Close]

BLAST of Cucsa.289160 vs. NCBI nr
Match: gi|844289602|gb|AKN08991.1| (superoxide dismutase [Luffa aegyptiaca])

HSP 1 Score: 285.4 bits (729), Expect = 8.0e-74
Identity = 135/147 (91.84%), Postives = 140/147 (95.24%), Query Frame = 1


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVK VAVLGSSEGVSGTIFF+QEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKGVAVLGSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNI VGEDGKA+FTI+DCQIPL G  SIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTISDCQIPLSGPNSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGM 148
           DPDDLGKGGHELS +TGNAG RVACG+
Sbjct: 121 DPDDLGKGGHELSLTTGNAGGRVACGI 147

[Close]

BLAST of Cucsa.289160 vs. NCBI nr
Match: gi|586004|sp|Q07796.2|SODC_IPOBA (RecName: Full=Superoxide dismutase [Cu-Zn])

HSP 1 Score: 275.8 bits (704), Expect = 6.3e-71
Identity = 131/147 (89.12%), Postives = 137/147 (93.20%), Query Frame = 1


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVL SSEGVSGTIFF+QEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGK+HGAP D+NRHAGDLGNI VGEDG A+FTITD QIPL G  S+IGRAVVVHG
Sbjct: 61  PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGM 148
           DPDDLGKGGHELS STGNAG RVACG+
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGI 147

[Close]

BLAST of Cucsa.289160 vs. NCBI nr
Match: gi|1012306281|gb|AMS25554.1| (CuSOD [Ipomoea batatas])

HSP 1 Score: 275.0 bits (702), Expect = 1.1e-70
Identity = 130/147 (88.44%), Postives = 136/147 (92.52%), Query Frame = 1


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVL SSEGV GTIFFTQ+GDGPTTVTGN+SGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVKGTIFFTQDGDGPTTVTGNISGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGK+HGAP+DENRHAGDLGNI VGEDG A+FTITD QIPL G  SIIGRAVVVH 
Sbjct: 61  PHFNPAGKEHGAPDDENRHAGDLGNITVGEDGTASFTITDKQIPLTGAHSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGM 148
           DPDDLGKGGHELS STGNAG RVACG+
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGI 147

The following BLAST results are available for this feature:

BLAST of Cucsa.289160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SODC_IPOBA	4.0e-73	89.12	Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2	[more]
SODC_NICPL	1.7e-71	87.07	Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2	[more]
SODC4_MAIZE	8.3e-71	85.71	Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2	[more]
SODC_ANACO	4.1e-70	84.35	Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1	[more]
SODC5_MAIZE	7.0e-70	84.35	Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2	[more]

BLAST of Cucsa.289160 vs. TrEMBL


Match Name	E-value	Identity	Description
B1PE19_CUCSA	6.1e-81	99.32	Superoxide dismutase [Cu-Zn] OS=Cucumis sativus GN=SOD PE=2 SV=1	[more]
A0A0S2LL33_CUCME	5.0e-75	94.56	Superoxide dismutase [Cu-Zn] OS=Cucumis melo PE=2 SV=1	[more]
A0A0U2DB27_LUFAE	5.6e-74	91.84	Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca PE=2 SV=1	[more]
A0A0S2PZD2_IPOBA	4.4e-71	89.12	Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SOD PE=2 SV=1	[more]
A0A142L027_IPOBA	7.5e-71	88.44	Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas PE=2 SV=1	[more]

BLAST of Cucsa.289160 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08830.1	2.0e-70	84.35	copper/zinc superoxide dismutase 1	[more]
AT5G18100.1	2.0e-51	61.64	copper/zinc superoxide dismutase 3	[more]
AT2G28190.1	8.6e-50	64.14	copper/zinc superoxide dismutase 2	[more]

BLAST of Cucsa.289160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|525507314\|ref\|NP_001267697.1\|	8.8e-81	99.32	superoxide dismutase [Cu-Zn]	[more]
gi\|659099705\|ref\|XP_008450736.1\|	7.2e-75	94.56	PREDICTED: superoxide dismutase [Cu-Zn]	[more]
gi\|844289602\|gb\|AKN08991.1\|	8.0e-74	91.84	superoxide dismutase [Luffa aegyptiaca]	[more]
gi\|586004\|sp\|Q07796.2\|SODC_IPOBA	6.3e-71	89.12	RecName: Full=Superoxide dismutase [Cu-Zn]	[more]
gi\|1012306281\|gb\|AMS25554.1\|	1.1e-70	88.44	CuSOD [Ipomoea batatas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001424	SOD_Cu_Zn_dom
IPR018152	SOD_Cu/Zn_BS
IPR024134	SOD_Cu/Zn_/chaperone
IPR001424	SOD_Cu_Zn_dom
IPR018152	SOD_Cu/Zn_BS
IPR024134	SOD_Cu/Zn_/chaperone
IPR001424	SOD_Cu_Zn_dom
IPR018152	SOD_Cu/Zn_BS
IPR024134	SOD_Cu/Zn_/chaperone
IPR001424	SOD_Cu_Zn_dom
IPR018152	SOD_Cu/Zn_BS
IPR024134	SOD_Cu/Zn_/chaperone
IPR001424	SOD_Cu_Zn_dom
IPR018152	SOD_Cu/Zn_BS
IPR024134	SOD_Cu/Zn_/chaperone

Vocabulary: **Biological Process**
Term	Definition
GO:0006801	superoxide metabolic process
GO:0055114	oxidation-reduction process
GO:0006801	superoxide metabolic process
GO:0055114	oxidation-reduction process
GO:0006801	superoxide metabolic process
GO:0055114	oxidation-reduction process
GO:0006801	superoxide metabolic process
GO:0055114	oxidation-reduction process
GO:0006801	superoxide metabolic process
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0004784	superoxide dismutase activity
GO:0046872	metal ion binding
GO:0004784	superoxide dismutase activity
GO:0046872	metal ion binding
GO:0004784	superoxide dismutase activity
GO:0046872	metal ion binding
GO:0004784	superoxide dismutase activity
GO:0046872	metal ion binding
GO:0004784	superoxide dismutase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006096	glycolytic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0006801	superoxide metabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004784	superoxide dismutase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.289160.5	Cucsa.289160.5	mRNA
Cucsa.289160.4	Cucsa.289160.4	mRNA
Cucsa.289160.3	Cucsa.289160.3	mRNA
Cucsa.289160.2	Cucsa.289160.2	mRNA
Cucsa.289160.1	Cucsa.289160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001424	Superoxide dismutase, copper/zinc binding domain	PRINTS	PR00068	CUZNDISMTASE	coord: 43..65 score: 9.7E-44coord: 98..120 score: 9.7E-44coord: 123..149 score: 9.7E-44coord: 79..88 score: 9.7
IPR001424	Superoxide dismutase, copper/zinc binding domain	GENE3D	G3DSA:2.60.40.200		coord: 3..150 score: 2.4
IPR001424	Superoxide dismutase, copper/zinc binding domain	PFAM	PF00080	Sod_Cu	coord: 12..148 score: 2.5
IPR001424	Superoxide dismutase, copper/zinc binding domain	unknown	SSF49329	Cu,Zn superoxide dismutase-like	coord: 2..150 score: 4.19
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00087	SOD_CU_ZN_1	coord: 43..53 scor
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00332	SOD_CU_ZN_2	coord: 137..148 scor
IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	PANTHER	PTHR10003	SUPEROXIDE DISMUTASE CU-ZN -RELATED	coord: 1..152 score: 8.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.289160	Cla011299	Watermelon (97103) v1	cgywmB531
Cucsa.289160	Cla019840	Watermelon (97103) v1	cgywmB533
Cucsa.289160	Csa1G573600	Cucumber (Chinese Long) v2	cgycuB414
Cucsa.289160	MELO3C015374	Melon (DHL92) v3.5.1	cgymeB481
Cucsa.289160	ClCG02G016260	Watermelon (Charleston Gray)	cgywcgB504
Cucsa.289160	ClCG03G016470	Watermelon (Charleston Gray)	cgywcgB505
Cucsa.289160	CSPI01G27200	Wild cucumber (PI 183967)	cgycpiB437
Cucsa.289160	CmaCh10G010940	Cucurbita maxima (Rimu)	cgycmaB0809
Cucsa.289160	CmoCh10G011710	Cucurbita moschata (Rifu)	cgycmoB0802
Cucsa.289160	Lsi06G001840	Bottle gourd (USVL1VR-Ls)	cgylsiB471
Cucsa.289160	Cp4.1LG11g09200	Cucurbita pepo (Zucchini)	cgycpeB0766
Cucsa.289160	MELO3C015374.2	Melon (DHL92) v3.6.1	cgymedB480
Cucsa.289160	CsaV3_1G039510	Cucumber (Chinese Long) v3	cgycucB446
Cucsa.289160	Cla97C03G066780	Watermelon (97103) v2	cgywmbB506
Cucsa.289160	BhiUN613G1	Wax gourd	cgywgoB590
Cucsa.289160	Carg27091	Silver-seed gourd	carcgyB0867

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None