Cucsa.281030.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAGAGAACTTACTACCTCAATGGAAAGTCGCCATTTTTGCAAGGTGTCATCCGTTCTTCAGAATCAAGAAaCAAAAAAAAGTTAAAAaCTCCACACGCTAGGGCTTAGGCGAAAGTGCGAAAGTTCTACAAATTTCGAATTGGGTTCGGTCTTTGTAAACAAAATAGTCGTCTAAGAATTATCTTAAGATTACCCACAAGTCCTTTTTCAGGTACATTTCTTCTATCAGCTTGGCGCCATCAGTTTTTATATCTAAATGAATTTGTTGAAGAGGAATAAGAGTTAATTCGTATGTGGTAGGTTGTTTAAACTAGTTAATCTATTCCTAATTTTGTATTCGAGATGTCATACTCCAGTTGAAGGGTTTGTTTGTTTGTTTTTGCAGTTTGGTTTTATCTTGTAGTTTATAAATTTGTGCTGCATTTGATTTTGGAGTATCCTTATCCTAGTTATTTGAAGGGTATAGAAGTGGTTAAGTTTGGCAATGTATGAATAGACTCGTATGGAGCTATTCAATTACCAGGTAGATATAACAAATTTGTGATTAGGAATATTTGTATTTCTCCGATCGAAACAGTGCATTATGTCGAGGAAGATATTCTAATCAGACGCATAATCAAATGTTGAAAGATCATGCGGTGTCAACTTCTCTTATTTTATAGGTCCTGTTCATTTTAGAGTATAGCATTACATGTGGGTGTGGGGAGTGGTTTTGTTTAAGAGGGAGGAAATTGCTTAATCTGCTCTATGTAGAAGGTTAAAATTGCAGTACTTACTTATGCTCGTGGTAGAATTGGATGAAATTGAAAGTTTAGGGTGTTAATATAACTTGAGAAGTTTAGTTATAAATTTGTTTTTTTtGCCCCCCCcAAAAAAaCGAATAAAACTAACTCATTCCCAGTAACGTTGTATACATTTATGTCTCCTTGTTGTACTCTGGGAAGCTGATGTCTTGGTTCATGGTGCCCCAGGAGGAAGAATGGATTTGGAGTCGGGCCCAGGGGGTTCTGTTTCTGCTGCAGCCATTGATTCTTCGAACATAGGGTTTCGGGTTCTCTCTCTTTCACCCACTGTCATTTGTATCCTCCTGTTTTCTATGTTTATTCTATCTATCTATGTTATACCTTGAAGTCTTTGAGTTTTATTTTATATACTGATTTTTCTTCTTTTTTGGTTGTTGTCTTCTTAAAGCTTTTGAAGAAGCATGGTTGGAGGGAAGGGACGGGCCTTGGAGTTTCTGAGCAGGTTATTTACTTATACTTTTCATGCTGTATCAGTTACTCTAAATAAGATTAGTTATTTCTCAATAATTTAAAAATGAGTAGTTGGTTAATGAAACAGGAAATTTCGGTCATTTGATATCCTGTAACGACATAGTCTATACAAACAAAAATTTACAGTGGAACCGTGATCATTATCAGAGTTAGTAATGAGGATTGAGGATTCTATACAGGGATAGAAGGGAAGGAAGAAGAGAGTGGATTAAAGCTATTGTTAAGTCTTAAGAGGCCTGTTAAAGACAGGGCAGTCTTTTGTTGGGTAGTTGTAGATTCCAATTGGGGCCCCTTACTGTATCCATCTGCTTGGAATGGAATAATTACCTGCTCGGGATGGTCAAGGTGGGAAATCCCTGATTTAACTGGGATATGGTGGACCGTGGAAAATTTTACATGGGGAAGACCAGTCTGTTTGTGAAATTCTCAAAGCTGGCAGTTCCTTTATAGGAAAAAGTGCGCATAAATCTATATGTTAATATTTTGTAATATCTGCAATCTATACTATACATGCATATGTACATGGTCATAAAATAATTAAACTCAAAAAGCTGCCGGTTAACTTTCATGGCAGAAAAATTTGATCCCTATGTGGGAATTCCATGAACCTCCTCCATTCTCAAAATGGAATTTAGGGTGGGGATGAAATATAAATTTTTCTGGAGAGTTTGTAGGGGAGAGCATTTTCCACTAGCTTGGGTGTAGTGTTTAGATTCCTACTAACTCTTAGTTGGCTTGTCTTATGCTAGAGCAGGGAAGAAGCAGTAGGTTATCGCTGGCTTTGTTTCCTTTCCACCTTAGAACTTTCAAAGAATTCATTTAGCATTTTTTCTTTGGTTTTGAGGGAGGTCTTTTTGGTAACCCTTCCTTGGGGAAGAGCTAAATGCAATTAGGGTAATCTCATGGGAATCATTATCACTTGAAAGAATGTATGAACATTCTTAGAGAGTTGCATTAAGTGGATGTGATAAAGGAGAATGGTGTCTTTGTCTCATCCTCTACTGTTTTCTGTTTTTGCCTCTCTAAAGCCAAGTTGAGAGATGTTTTGCCACTTCTTAGATTTATTATTTGTTGTCCCTCATTTTTTATCATCCTAACCACGGATTTTTTGTTTTATTGTTGTTTTTATAAAAGGGAAAGTGCATGGTGGTTCGTTTTTtCCTCTTATGGTGCATGTAACTAGGTCATTGCAGTGCAGTGCTCTCTTGTTTGCTGTTATCCTTCGATGTTTACACTTGGAAACTTACTATAATTGAACTCTCATACAAGCAGGGTAGACTGGAACCCGTACAGGCGTCTGTGAAGAATAATAAACGAGGCTTGGGAGCAGATAAAGTGAAGAAGAAAATTAAAGAAACTACAGATAATGCAACCTCAGATAGAAAAAaTAACCAGGTAAAACTTTTGTACATGAAGTTCTCTGCATCCTTAATCGCTATCATCATTCTGGAAACTACAGGAGCTTAGAAAAATTCTTTTGAATTAGAATAAATTTCAAAATGAGCATAATTACGAAAAGAAAGTTATGTAGGAAACACTAAGAAGAAGAAGAGTAAGTGCACTTAGCCATCTCAACAATTCTATATTTTGACATGATTGCCTTCAAAATTTTCATATATGACTTTTTTCGGTTATGTGTTAACTAATTGGATTATGTTCAAGTTCGAAAAAACACATTTATTTTGAATAAAACGGGTTTGAACTCAAGTGGATAGAGTTGTTGCACATTTAGAAGTTCACTCCACGACAATTATGTTTTATTTTTATTTATTTTTTAGTTCAACAATAGTGATGGTAGGTAGATTCAAACTTTTAACTCTTTTAGTCAATGGCATGTGCTTCACTTGTTTAGTTAGGCTCAGGTTAACTCGAAAAAATAAGCGGAGTTAATAATAAGTATGTTGTTGATCTCCAGGAACGTCCTCCTCCAAAGAAAGCGAAGGGGCTAACGAAAAGGATGAGGAAGATGCAAGAGGAAGAGAGGCTATTTCAGGAGAAGGAATTTGAACAAGCATTTTTTAGGGAATTTTGGCCAGAAAaTGTTTGATACATTAACTCTACATATCATCATTGTTAAGTAAATTCAGATTCTTTGTCAAAAGCCTTTGCAGTCACCAAGTAGAGTTTGTAAATATGATTACA GAGAGAACTTACTACCTCAATGGAAAGTCGCCATTTTTGCAAGGTGTCATCCGTTCTTCAGAATCAAGAAACAAAAAAAAGTTAAAAACTCCACACGCTAGGGCTTAGGCGAAAGTGCGAAAGTTCTACAAATTTCGAATTGGGTTCGGTCTTTGTAAACAAAATAGTCGTCTAAGAATTATCTTAAGATTACCCACAAGTCCTTTTTCAGGAGGAAGAATGGATTTGGAGTCGGGCCCAGGGGGTTCTGTTTCTGCTGCAGCCATTGATTCTTCGAACATAGGGTTTCGGCTTTTGAAGAAGCATGGTTGGAGGGAAGGGACGGGCCTTGGAGTTTCTGAGCAGGGTAGACTGGAACCCGTACAGGCGTCTGTGAAGAATAATAAACGAGGCTTGGGAGCAGATAAAGTGAAGAAGAAAATTAAAGAAACTACAGATAATGCAACCTCAGATAGAAAAAATAACCAGGAACGTCCTCCTCCAAAGAAAGCGAAGGGGCTAACGAAAAGGATGAGGAAGATGCAAGAGGAAGAGAGGCTATTTCAGGAGAAGGAATTTGAACAAGCATTTTTTAGGGAATTTTGGCCAGAAAATGTTTGATACATTAACTCTACATATCATCATTGTTAAGTAAATTCAGATTCTTTGTCAAAAGCCTTTGCAGTCACCAAGTAGAGTTTGTAAATATGATTACA ATGGATTTGGAGTCGGGCCCAGGGGGTTCTGTTTCTGCTGCAGCCATTGATTCTTCGAACATAGGGTTTCGGCTTTTGAAGAAGCATGGTTGGAGGGAAGGGACGGGCCTTGGAGTTTCTGAGCAGGGTAGACTGGAACCCGTACAGGCGTCTGTGAAGAATAATAAACGAGGCTTGGGAGCAGATAAAGTGAAGAAGAAAATTAAAGAAACTACAGATAATGCAACCTCAGATAGAAAAAaTAACCAGGAACGTCCTCCTCCAAAGAAAGCGAAGGGGCTAACGAAAAGGATGAGGAAGATGCAAGAGGAAGAGAGGCTATTTCAGGAGAAGGAATTTGAACAAGCATTTTTTAGGGAATTTTGGCCAGAAAaTGTTTGA MDLESGPGGSVSAAAIDSSNIGFRLLKKHGWREGTGLGVSEQGRLEPVQASVKNNKRGLGADKVKKKIKETTDNATSDRKNNQERPPPKKAKGLTKRMRKMQEEERLFQEKEFEQAFFREFWPENV*
BLAST of Cucsa.281030.1 vs. Swiss-Prot
Match: GPT11_DANRE (G patch domain-containing protein 11 OS=Danio rerio GN=gpatch11 PE=2 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 2.3e-07 Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. Swiss-Prot
Match: GPAN1_CAEEL (G patch domain and ankyrin repeat-containing protein 1 homolog OS=Caenorhabditis elegans GN=ZK1320.7 PE=3 SV=3) HSP 1 Score: 55.8 bits (133), Expect = 3.9e-07 Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. Swiss-Prot
Match: SQS1_YARLI (Protein SQS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SQS1 PE=3 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 3.9e-07 Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. Swiss-Prot
Match: GPTC8_HUMAN (G patch domain-containing protein 8 OS=Homo sapiens GN=GPATCH8 PE=1 SV=2) HSP 1 Score: 54.7 bits (130), Expect = 8.6e-07 Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. Swiss-Prot
Match: GPTC8_MOUSE (G patch domain-containing protein 8 OS=Mus musculus GN=Gpatch8 PE=1 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 8.6e-07 Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. TrEMBL
Match: A0A0A0KPR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G579590 PE=4 SV=1) HSP 1 Score: 256.5 bits (654), Expect = 1.7e-65 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. TrEMBL
Match: W9RLL6_9ROSA (Protein SQS1 OS=Morus notabilis GN=L484_023067 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 7.1e-40 Identity = 89/122 (72.95%), Postives = 101/122 (82.79%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. TrEMBL
Match: I1LFB7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G288900 PE=4 SV=1) HSP 1 Score: 164.5 bits (415), Expect = 8.6e-38 Identity = 83/116 (71.55%), Postives = 96/116 (82.76%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. TrEMBL
Match: A0A0B2RSF5_GLYSO (G patch domain-containing protein 8 OS=Glycine soja GN=glysoja_013556 PE=4 SV=1) HSP 1 Score: 164.5 bits (415), Expect = 8.6e-38 Identity = 83/116 (71.55%), Postives = 96/116 (82.76%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. TrEMBL
Match: A0A0B0N7E6_GOSAR (G patch domain-containing 8 OS=Gossypium arboreum GN=F383_14496 PE=4 SV=1) HSP 1 Score: 164.1 bits (414), Expect = 1.1e-37 Identity = 81/115 (70.43%), Postives = 96/115 (83.48%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. TAIR10
Match: AT5G08535.1 (AT5G08535.1 D111/G-patch domain-containing protein) HSP 1 Score: 131.7 bits (330), Expect = 3.1e-31 Identity = 67/120 (55.83%), Postives = 88/120 (73.33%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. TAIR10
Match: AT3G52350.1 (AT3G52350.1 D111/G-patch domain-containing protein) HSP 1 Score: 118.6 bits (296), Expect = 2.7e-27 Identity = 62/115 (53.91%), Postives = 81/115 (70.43%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. TAIR10
Match: AT5G26610.1 (AT5G26610.1 D111/G-patch domain-containing protein) HSP 1 Score: 58.9 bits (141), Expect = 2.6e-09 Identity = 40/122 (32.79%), Postives = 63/122 (51.64%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. TAIR10
Match: AT3G54230.2 (AT3G54230.2 suppressor of abi3-5) HSP 1 Score: 53.9 bits (128), Expect = 8.3e-08 Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. TAIR10
Match: AT3G57910.1 (AT3G57910.1 D111/G-patch domain-containing protein) HSP 1 Score: 50.4 bits (119), Expect = 9.2e-07 Identity = 26/70 (37.14%), Postives = 42/70 (60.00%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. NCBI nr
Match: gi|449458728|ref|XP_004147099.1| (PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Cucumis sativus]) HSP 1 Score: 256.5 bits (654), Expect = 2.4e-65 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. NCBI nr
Match: gi|659090235|ref|XP_008445906.1| (PREDICTED: G patch domain-containing protein 11 [Cucumis melo]) HSP 1 Score: 246.1 bits (627), Expect = 3.2e-62 Identity = 120/126 (95.24%), Postives = 123/126 (97.62%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. NCBI nr
Match: gi|703126398|ref|XP_010103571.1| (Protein SQS1 [Morus notabilis]) HSP 1 Score: 171.4 bits (433), Expect = 1.0e-39 Identity = 89/122 (72.95%), Postives = 101/122 (82.79%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. NCBI nr
Match: gi|719963103|ref|XP_010248673.1| (PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Nelumbo nucifera]) HSP 1 Score: 171.4 bits (433), Expect = 1.0e-39 Identity = 83/116 (71.55%), Postives = 100/116 (86.21%), Query Frame = 1
BLAST of Cucsa.281030.1 vs. NCBI nr
Match: gi|1009138677|ref|XP_015886712.1| (PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog isoform X1 [Ziziphus jujuba]) HSP 1 Score: 167.5 bits (423), Expect = 1.5e-38 Identity = 84/125 (67.20%), Postives = 103/125 (82.40%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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