Cucsa.268980.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.268980.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Agamous-like MADS-box AGL15-like protein
Location	scaffold02444 : 148814 .. 151656 (-)
Sequence length	591

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTAGATTTTCCTAAAGAGACTTTGGACCACCCAGCACAAGTAAATGCAGTACATTTATGGTCTAAGTTTCTTTCTCTTATTTTTTTTATTTATTTTCTGCTCAAAATTCTGTTGAATTTTTCTTCTGGAAAATAGCTGCCACCATCTGATTCTGATGCAAAGTCGTCCGAGGAGGAGATTGGAAAGCTAAAGTTAGCATATACGTAAGTCAAAAGTTTTCATATTTGTTTGTCAGCTGTTCTTCTTGAGACACCTCACATAAGTTTCTTGTTCTATTCATATTTGCAATAAAAGGAAGTGATCTCAAGTCATTAAAAGAACGAGTAATTAATTGCGAGTAATTAGTTGATACACTGAAATAGAAGAGTTGAGTAGAAGTTCTGTGTTCATTTTACCAATTATTCTAGAACATGACTTAGAAATCCTGTTATATGGTTAATAACTCTTAGTTTCTTTTTTCTTTGTGTAATCTGGATTTTATAGGCAGATGAGAGGCCAGGAACTGGATAGTTTGAGCTTTATAGACCTACAGAACTTAGAAAACCAGTTGCGGGAAGGGATCATATCTATCAAAGACAAGAAGGTGCCTTGAGAAATAGAATCTACATGTTCATTTTAGTACTTGTATGCTTGCGTTGGCTGAGACATTGTTTTTGTTTTTGTAGGAGACACTACTTTTGGAACAGCTCCAAAGGTGTAGGTCACAGGTAACTTGGTTATCCCTTTCTTTTAATGTTATTATTTATTCATATGTTTTTTAAAATTCAAAGAAGTTACAATCTCACTTAAGATTTAGTTTTGGATGTTGAGTTGGTGACTTATTATTTATAACAATTTTGAAAATGGCGTAAGGAACTATATTAGGGGCTGTTTGGAAAGCCGAAATGTAATTAGGATTACTGGAAATCAGATGAGAGTTGAAAAATGTGAGTAATAAAAAATTAAACGAAAATAAGATCGTGAAGTGAAAACACTCAAAAAGATGGTTGGATTGAAAACTATTAGAATGAAATGAGTTTTATAACAAATTGGACCTAGAACGCTCAATCCAAACATGAATTTTAGACTATATTACATTACAAATTCATCCCATCACGGATCACCAAAACACCCCCTTACAGTCACTCTGAGAAAATAAGAACTATGTTAGTGATACATATTGAAGAAATGTTCCTCGATTCTTTGTTAAATTTTCTTATAATTTCATTTTCCTTTCAAACTTTATACTACGTTCTATTCATCTTGTCATCCTATTTTCATCTTCAGCCATAGGTCTTGAGTCCAGTTAGATTTTGTTTGATTTGACCAAAATTGATTCTGGTTGTGTATCATTTTAAATGCAACAAAATGAGAAGACAATTGTTATGTAACCAAGTTTGATGCATGGTACGATGGAAAGTAAGTAGATAATGCGATGGATGAAATGGTAGTGGAAAAATTTGTAAGTTTATAGACTGATGGATGAACAGAAATGCTTGTTTCATTACACTTCAAAATAGGTCTTTTATTAGTTTATGTGGAGGCAGGAATCATGAACTTGTATAAACATAATCTCATGAAACCAACTTCCACTCTTGATCTTAGTGGTTGATTATTGATTATTTCCCATCTGATTTCTGTTTACCTTTAGGGGGAAGTAGTCATTTCAGAGAATGAAACCCTGCGAAAACAGGCAAGTTTTCGGCTTCATGAGTGATTCAACTTAGACTTCTGATATTGAAAGAATTGACCATAAAAATTTTTATACTTTTCTTCCTTTTAATAATTTATAGCTCGAGGAGTTTCAGCACAGAAATAATATAACACTTCAGGAGTCTAGTCCCCTTCAGAGATCCTACTTTTCGGATTCGAAAACTGCTTCTACCAATGAGACCGAGGTCAAGACGGAGGTAGAGGAAAATGACCGCTCAGAAATTTCCTTGCATCTGGGGTAAACTTTAAATTTCTTAGTCAAGTCTCTAGAATTTTTTTTACTAGTACAATTTTGATTGTGGGTTGGAAGATTGAACTTTCTATCTCTAGGGATGGAAGTCATTATGATTCCGCTGATTCCAACTCACTTTGGTAATGATTTGCTTTCTTAAAAAACGTTGCAATCTTTTTCAAATTTAAAAAACAAAAATTAGGCTTTCATGTTTGAAATTGATTAATGATTCCTTGTAACACTCTTGAGAGTATCCTTCACATAAAGAAAATAAGGTTTAAAAAGCAATGATTTAGTCCTGACTTAACTTATGTACACTCAGAAAAGATAAGAAAAATTAACTTATGCATGATTGATTTAGTGCTTACTAGGTAGTACATTAATATTTTGATGGAGGTTTGAACTTGTGTAGTTAAATAAACCGAACTAGTTAGGGATCAACACATTAAAGAATAATGCATTACATAGTAAATTTTGCAATGCTTCACCTTTGTGAAATTTTTCTTAGTTGCACTAAATTGTCTCAAAATTTAAATTAGTTACTAAAGTTCATAGACTAAATTTAAAATTATAAAGATGTATTTTTGATACTAATATTTAAGGATTAAATTGTTTTCTTCCATGATAAAACTTTTTCATCAAAATATGAAACCGTGTGACCTCATACATGAGCTATGACATCTAATTTTTTTGTTTTGCCCTTGCTCAATTCATTTAAGTATGACTAACGGACCAATGTGATCTGAGTTAAGTAACAAAATCCAAAATTTTCATTAGGTTGTCATTGGATGGTCAACGAAAAAGGAAACGATCGGTTGAAGGTGCGAGCACTGACACAACCTGTAGTCAAGTAGAGTTGGAAGGGGATGCACTATTAGCAAATGACGAACTCTCTCGTCATTTTGGTATGTAA

mRNA sequence

ATGGAATTAGATTTTCCTAAAGAGACTTTGGACCACCCAGCACAACTGCCACCATCTGATTCTGATGCAAAGTCGTCCGAGGAGGAGATTGGAAAGCTAAAGTTAGCATATACGCAGATGAGAGGCCAGGAACTGGATAGTTTGAGCTTTATAGACCTACAGAACTTAGAAAACCAGTTGCGGGAAGGGATCATATCTATCAAAGACAAGAAGGAGACACTACTTTTGGAACAGCTCCAAAGGTGTAGGTCACAGGGGGAAGTAGTCATTTCAGAGAATGAAACCCTGCGAAAACAGCTCGAGGAGTTTCAGCACAGAAATAATATAACACTTCAGGAGTCTAGTCCCCTTCAGAGATCCTACTTTTCGGATTCGAAAACTGCTTCTACCAATGAGACCGAGGTCAAGACGGAGGTAGAGGAAAATGACCGCTCAGAAATTTCCTTGCATCTGGGGTTGTCATTGGATGGTCAACGAAAAAGGAAACGATCGGTTGAAGGTGCGAGCACTGACACAACCTGTAGTCAAGTAGAGTTGGAAGGGGATGCACTATTAGCAAATGACGAACTCTCTCGTCATTTTGGTATGTAA

Coding sequence (CDS)

ATGGAATTAGATTTTCCTAAAGAGACTTTGGACCACCCAGCACAACTGCCACCATCTGATTCTGATGCAAAGTCGTCCGAGGAGGAGATTGGAAAGCTAAAGTTAGCATATACGCAGATGAGAGGCCAGGAACTGGATAGTTTGAGCTTTATAGACCTACAGAACTTAGAAAACCAGTTGCGGGAAGGGATCATATCTATCAAAGACAAGAAGGAGACACTACTTTTGGAACAGCTCCAAAGGTGTAGGTCACAGGGGGAAGTAGTCATTTCAGAGAATGAAACCCTGCGAAAACAGCTCGAGGAGTTTCAGCACAGAAATAATATAACACTTCAGGAGTCTAGTCCCCTTCAGAGATCCTACTTTTCGGATTCGAAAACTGCTTCTACCAATGAGACCGAGGTCAAGACGGAGGTAGAGGAAAATGACCGCTCAGAAATTTCCTTGCATCTGGGGTTGTCATTGGATGGTCAACGAAAAAGGAAACGATCGGTTGAAGGTGCGAGCACTGACACAACCTGTAGTCAAGTAGAGTTGGAAGGGGATGCACTATTAGCAAATGACGAACTCTCTCGTCATTTTGGTATGTAA

Protein sequence

MELDFPKETLDHPAQLPPSDSDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQLREGIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNITLQESSPLQRSYFSDSKTASTNETEVKTEVEENDRSEISLHLGLSLDGQRKRKRSVEGASTDTTCSQVELEGDALLANDELSRHFGM*

Homology

[Close]

BLAST of Cucsa.268980.1 vs. Swiss-Prot
Match: AGL18_ARATH (Agamous-like MADS-box protein AGL18 OS=Arabidopsis thaliana GN=AGL18 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.9e-17
Identity = 57/154 (37.01%), Postives = 88/154 (57.14%), Query Frame = 1


Query: 25  SSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQLREGIISIKDKKETLLLEQLQRCRS 84
           S + E+ +L+LA  +++G+EL+ +SF DL +LENQL E + S+KD+K  +LL Q++R R 
Sbjct: 103 SMKGELERLQLAIERLKGKELEGMSFPDLISLENQLNESLHSVKDQKTQILLNQIERSRI 162

Query: 85  QGEVVISENETLRKQLEEFQHRNNITLQESSPLQRSYFSDSKTASTNETEVKTEVEENDR 144
           Q +  + EN+ LRKQ+E     +   +    P   S  +D +++S+ E E      E   
Sbjct: 163 QEKKALEENQILRKQVEMLGRGSGPKVLNERPQDSSPEADPESSSSEEDE---NDNEEHH 222

Query: 145 SEISLHLGLSLDGQ-RKRKRSVEGASTDTTCSQV 178
           S+ SL LGLS  G   KRK+       D + SQV
Sbjct: 223 SDTSLQLGLSSTGYCTKRKKPKIELVCDNSGSQV 253

[Close]

BLAST of Cucsa.268980.1 vs. Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-10
Identity = 48/152 (31.58%), Postives = 84/152 (55.26%), Query Frame = 1


Query: 27  EEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQLREGIISIKDKKETLLLEQLQRCRSQG 86
           ++EI  L+  +  M+G+ L+ LS  +LQ+LE QL   +IS++++KE LL +QL+  R + 
Sbjct: 98  KDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKE 157

Query: 87  EVVISENETLRKQLEEFQHRNNITLQESSPLQ-RSYFSDSKTASTNET---EVKTEVEEN 146
           +    ENETLR+Q++E +       Q  +P   R +  D K +  + T   ++   + +N
Sbjct: 158 QRAELENETLRRQVQELRSFLPSINQHYAPSYIRCFAIDPKNSLLSNTCLGDINCSL-QN 217

Query: 147 DRSEISLHLGLSLDGQ--RKRKRSVEGASTDT 173
             S+ +L LGL  +    RK +   E  S+D+
Sbjct: 218 TNSDTTLQLGLPGEAHDTRKNEGDRESPSSDS 248

[Close]

BLAST of Cucsa.268980.1 vs. Swiss-Prot
Match: AGL16_ARATH (Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-08
Identity = 41/134 (30.60%), Postives = 71/134 (52.99%), Query Frame = 1


Query: 22  DAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQLREGIISIKDKKETLLLEQLQR 81
           +A   + ++  L+  + QM G+EL  LS   LQNLENQL   +  ++ KK+ +L+E++Q 
Sbjct: 92  EAAILKRQLHNLQENHRQMMGEELSGLSVEALQNLENQLELSLRGVRMKKDQMLIEEIQV 151

Query: 82  CRSQGEVVISENETLRKQLEEFQHRNNITLQES-SPLQRSYFSDSKTASTNETEVKTEVE 141
              +G +V  EN  L K++    H+ N+ L E  S ++    ++  +  TN  +++    
Sbjct: 152 LNREGNLVHQENLDLHKKV-NLMHQQNMELHEKVSEVEGVKIANKNSLLTNGLDMR---- 211

Query: 142 ENDRSEISLHLGLS 155
             D S   +HL LS
Sbjct: 212 --DTSNEHVHLQLS 218

[Close]

BLAST of Cucsa.268980.1 vs. Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.2e-08
Identity = 45/174 (25.86%), Postives = 87/174 (50.00%), Query Frame = 1


Query: 8   ETLDHPA---QLPPSDSDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQLREGI 67
           E LD P+   QL  + + ++ S+E I +      QMRG+EL  L+  +LQ LE  L  G+
Sbjct: 77  EKLDQPSLELQLVENSNYSRLSKE-ISEKSHRLRQMRGEELQGLNIEELQQLERSLETGL 136

Query: 68  ISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNN-----------ITLQE 127
             + ++K   ++ ++ + + +G  ++ ENE LR+Q+ E  + NN           +  + 
Sbjct: 137 SRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQVMEISNNNNNNNNGYREAGVVIFEP 196

Query: 128 SSPLQRSYFSDSKTAS--TNE-TEVKTEVEENDRSEISLHLGLSLDGQRKRKRS 165
            +    +   D +++   TN    +    +++D S+ SL LGL+   + KR ++
Sbjct: 197 ENGFNNNNNEDGQSSESVTNPCNSIDPPPQDDDSSDTSLKLGLATLLRLKRSKA 249

[Close]

BLAST of Cucsa.268980.1 vs. Swiss-Prot
Match: AGL24_ARATH (MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.4e-08
Identity = 36/131 (27.48%), Postives = 69/131 (52.67%), Query Frame = 1


Query: 23  AKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQLREGIISIKDKKETLLLEQLQRC 82
           +K  E++  +L+    ++RG++LD L+  +LQ LE  L  G+  + +KK   ++ Q+   
Sbjct: 98  SKEVEDKTKQLR----KLRGEDLDGLNLEELQRLEKLLESGLSRVSEKKGECVMSQIFSL 157

Query: 83  RSQGEVVISENETLRKQLEEFQHRNNITLQESSPLQRSYFSDSKTASTNETEVKTEVEEN 142
             +G  ++ EN+ LR +LE  +     TL+E+         ++++ +TN +   +     
Sbjct: 158 EKRGSELVDENKRLRDKLETLERAKLTTLKEA--------LETESVTTNVSSYDSGTPLE 216

Query: 143 DRSEISLHLGL 154
           D S+ SL LGL
Sbjct: 218 DDSDTSLKLGL 216

[Close]

BLAST of Cucsa.268980.1 vs. TrEMBL
Match: A0A0A0KYB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G410880 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 4.1e-103
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 1


Query: 1   MELDFPKETLDHPAQLPPSDSDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQL 60
           MELDFPKETLDHPAQLPPSDSDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQL
Sbjct: 13  MELDFPKETLDHPAQLPPSDSDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQL 72

Query: 61  REGIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNITLQESSPLQRS 120
           REGIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNITLQESSPLQRS
Sbjct: 73  REGIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNITLQESSPLQRS 132

Query: 121 YFSDSKTASTNETEVKTEVEENDRSEISLHLGLSLDGQRKRKRSVEGASTDTTCSQVELE 180
           YFSDSKTASTNETEVKTEVEENDRSEISLHLGLSLDGQRKRKRSVEGASTDTTCSQVELE
Sbjct: 133 YFSDSKTASTNETEVKTEVEENDRSEISLHLGLSLDGQRKRKRSVEGASTDTTCSQVELE 192

Query: 181 GDALLANDELSRHFGM 197
           GDALLANDELSRHFGM
Sbjct: 193 GDALLANDELSRHFGM 208

[Close]

BLAST of Cucsa.268980.1 vs. TrEMBL
Match: A0A061EXS7_THECC (AGAMOUS-like 18, putative OS=Theobroma cacao GN=TCM_024579 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.7e-27
Identity = 82/187 (43.85%), Postives = 109/187 (58.29%), Query Frame = 1


Query: 3   LDFPKETLDHPAQLPPSDS-------DAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQN 62
           L + + T + P+Q  PSD        D  + +EE  +L+ AY ++ G+ELD L+F +LQ 
Sbjct: 67  LRYSRGTTEDPSQEHPSDEHKNLQPIDVNTLKEEYLRLRAAYMRLNGKELDGLTFKELQQ 126

Query: 63  LENQLREGIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNITLQESS 122
           LE+QL EGI+S+K +KE +LLEQL+R R Q    I ENETLRKQ+ E Q   +  L E +
Sbjct: 127 LEHQLNEGILSVKQQKEQILLEQLKRSRLQERQAILENETLRKQIVELQQNTSSNLLEYN 186

Query: 123 PLQR-SYFSDSKTASTNETEVKTEVEENDRSEISLHLGLSLDGQRKRK-RSVEGASTDTT 181
           PLQR S +S          E     + ND S+ SLHLGL  D  RKRK   +E  S +TT
Sbjct: 187 PLQRVSPYSSKAEYDCASEEEDDHADNNDHSDTSLHLGLPSDVGRKRKVAKIEPVSNETT 246

[Close]

BLAST of Cucsa.268980.1 vs. TrEMBL
Match: V7BLX2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G251600g PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-25
Identity = 73/170 (42.94%), Postives = 100/170 (58.82%), Query Frame = 1


Query: 8   ETLDHPAQLPPSD-----SDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQLRE 67
           ++ + P  +PP D      D    ++EI KL+ AY  M G+ELD LS  +LQ+LENQL E
Sbjct: 76  DSAEQPIDVPPKDVMVMEPDTNLLKDEITKLRSAYLNMMGKELDGLSLKELQHLENQLSE 135

Query: 68  GIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNITLQESSPLQRSYF 127
           GI+++K+KKE +L+EQL+R R Q +  + ENE LRKQLEE Q++      E S L RS+ 
Sbjct: 136 GILAVKEKKEQVLVEQLRRSRIQEQKAVLENEVLRKQLEEIQNKTKTQFLEFSSLDRSFS 195

Query: 128 SDSKTASTNETEVKTEVEENDRSEISLHLGLSLDGQRKRKRSVEGASTDT 173
            +S  +  N        EEND S+ SL L LS D  R+RK     A  D+
Sbjct: 196 KNSSKSLFN-----CASEENDHSDTSLQLALSTDYGRQRKELKIEACNDS 240

[Close]

BLAST of Cucsa.268980.1 vs. TrEMBL
Match: A0A067DSV8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039982mg PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 9.9e-25
Identity = 70/160 (43.75%), Postives = 104/160 (65.00%), Query Frame = 1


Query: 15  QLPPSDSDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQLREGIISIKDKKETL 74
           +LPP  ++  + ++E  +L+LAY +M GQELD LSF +LQ LE+QL EG++S+KD KE +
Sbjct: 89  ELPPKSAELNALKDEYARLRLAYMRMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQV 148

Query: 75  LLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNIT-LQESSPLQRSYFSDSKTASTNET 134
           LLEQ++R R   +  + ENETLRKQ+EE +  ++ + L E  PL+R  FS +K    +  
Sbjct: 149 LLEQIRRSRLMEQKAMLENETLRKQMEELRRSSSRSPLVEFDPLERR-FSFTK-LKADHC 208

Query: 135 EVKTEVEENDRSEISLHLGLSLDGQRKRKR-SVEGASTDT 173
              +   E+D S+ SLHLGLS + +RKRK   +E    D+
Sbjct: 209 GCTSNENEDDHSDTSLHLGLSSEVRRKRKAPKIESTGNDS 246

[Close]

BLAST of Cucsa.268980.1 vs. TrEMBL
Match: V4SC55_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005698mg PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 9.9e-25
Identity = 70/160 (43.75%), Postives = 104/160 (65.00%), Query Frame = 1


Query: 15  QLPPSDSDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQLREGIISIKDKKETL 74
           +LPP  ++  + ++E  +L+LAY +M GQELD LSF +LQ LE+QL EG++S+KD KE +
Sbjct: 89  ELPPKSAELNALKDEYARLRLAYMRMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQV 148

Query: 75  LLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNIT-LQESSPLQRSYFSDSKTASTNET 134
           LLEQ++R R   +  + ENETLRKQ+EE +  ++ + L E  PL+R  FS +K    +  
Sbjct: 149 LLEQIRRSRLMEQKAMLENETLRKQMEELRRSSSRSPLVEFDPLERR-FSFTK-LKADHC 208

Query: 135 EVKTEVEENDRSEISLHLGLSLDGQRKRKR-SVEGASTDT 173
              +   E+D S+ SLHLGLS + +RKRK   +E    D+
Sbjct: 209 GCTSNENEDDHSDTSLHLGLSSEVRRKRKAPKIESTGNDS 246

[Close]

BLAST of Cucsa.268980.1 vs. TAIR10
Match: AT3G57390.1 (AT3G57390.1 AGAMOUS-like 18)

HSP 1 Score: 89.4 bits (220), Expect = 2.8e-18
Identity = 57/154 (37.01%), Postives = 88/154 (57.14%), Query Frame = 1


Query: 25  SSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQLREGIISIKDKKETLLLEQLQRCRS 84
           S + E+ +L+LA  +++G+EL+ +SF DL +LENQL E + S+KD+K  +LL Q++R R 
Sbjct: 103 SMKGELERLQLAIERLKGKELEGMSFPDLISLENQLNESLHSVKDQKTQILLNQIERSRI 162

Query: 85  QGEVVISENETLRKQLEEFQHRNNITLQESSPLQRSYFSDSKTASTNETEVKTEVEENDR 144
           Q +  + EN+ LRKQ+E     +   +    P   S  +D +++S+ E E      E   
Sbjct: 163 QEKKALEENQILRKQVEMLGRGSGPKVLNERPQDSSPEADPESSSSEEDE---NDNEEHH 222

Query: 145 SEISLHLGLSLDGQ-RKRKRSVEGASTDTTCSQV 178
           S+ SL LGLS  G   KRK+       D + SQV
Sbjct: 223 SDTSLQLGLSSTGYCTKRKKPKIELVCDNSGSQV 253

[Close]

BLAST of Cucsa.268980.1 vs. TAIR10
Match: AT3G57230.1 (AT3G57230.1 AGAMOUS-like 16)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 41/134 (30.60%), Postives = 71/134 (52.99%), Query Frame = 1


Query: 22  DAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQLREGIISIKDKKETLLLEQLQR 81
           +A   + ++  L+  + QM G+EL  LS   LQNLENQL   +  ++ KK+ +L+E++Q 
Sbjct: 92  EAAILKRQLHNLQENHRQMMGEELSGLSVEALQNLENQLELSLRGVRMKKDQMLIEEIQV 151

Query: 82  CRSQGEVVISENETLRKQLEEFQHRNNITLQES-SPLQRSYFSDSKTASTNETEVKTEVE 141
              +G +V  EN  L K++    H+ N+ L E  S ++    ++  +  TN  +++    
Sbjct: 152 LNREGNLVHQENLDLHKKV-NLMHQQNMELHEKVSEVEGVKIANKNSLLTNGLDMR---- 211

Query: 142 ENDRSEISLHLGLS 155
             D S   +HL LS
Sbjct: 212 --DTSNEHVHLQLS 218

[Close]

BLAST of Cucsa.268980.1 vs. TAIR10
Match: AT4G24540.1 (AT4G24540.1 AGAMOUS-like 24)

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-09
Identity = 36/131 (27.48%), Postives = 69/131 (52.67%), Query Frame = 1


Query: 23  AKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQLREGIISIKDKKETLLLEQLQRC 82
           +K  E++  +L+    ++RG++LD L+  +LQ LE  L  G+  + +KK   ++ Q+   
Sbjct: 98  SKEVEDKTKQLR----KLRGEDLDGLNLEELQRLEKLLESGLSRVSEKKGECVMSQIFSL 157

Query: 83  RSQGEVVISENETLRKQLEEFQHRNNITLQESSPLQRSYFSDSKTASTNETEVKTEVEEN 142
             +G  ++ EN+ LR +LE  +     TL+E+         ++++ +TN +   +     
Sbjct: 158 EKRGSELVDENKRLRDKLETLERAKLTTLKEA--------LETESVTTNVSSYDSGTPLE 216

Query: 143 DRSEISLHLGL 154
           D S+ SL LGL
Sbjct: 218 DDSDTSLKLGL 216

[Close]

BLAST of Cucsa.268980.1 vs. TAIR10
Match: AT2G22540.1 (AT2G22540.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 55.1 bits (131), Expect = 5.8e-08
Identity = 52/168 (30.95%), Postives = 74/168 (44.05%), Query Frame = 1


Query: 8   ETLDHPA---QLPPSDSDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQLREGI 67
           E LD P+   QL  +   A+ S+E I        QMRG+EL  L   +LQ LE  L  G+
Sbjct: 77  EKLDQPSLELQLVENSDHARMSKE-IADKSHRLRQMRGEELQGLDIEELQQLEKALETGL 136

Query: 68  --------------ISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNIT 127
                         IS   KK   L+++ +R R QG  +  ENE L  Q+    H +   
Sbjct: 137 TRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQGTQLTEENERLGMQICNNVHAHGGA 196

Query: 128 LQESSPL-QRSYFSDSKTASTNETEVKTEVEENDRSEISLHLGLSLDG 158
             E++ + +    S+S T + N T    + E +D    SL LGL   G
Sbjct: 197 ESENAAVYEEGQSSESITNAGNSTGAPVDSESSD---TSLRLGLPYGG 240

[Close]

BLAST of Cucsa.268980.1 vs. TAIR10
Match: AT2G14210.1 (AT2G14210.1 AGAMOUS-like 44)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-07
Identity = 26/106 (24.53%), Postives = 61/106 (57.55%), Query Frame = 1


Query: 8   ETLDHPAQLPPSDSDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQLREGIISI 67
           + L+H +++     +  S ++++  L+  + ++ G+EL  ++  DLQNLE+QL   +  +
Sbjct: 79  QLLNHASEIKFWQREVASLQQQLQYLQECHRKLVGEELSGMNANDLQNLEDQLVTSLKGV 138

Query: 68  KDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNITLQE 114
           + KK+ L+  +++    +G+++  EN  L + + +   + NI LQ+
Sbjct: 139 RLKKDQLMTNEIRELNRKGQIIQKENHEL-QNIVDIMRKENIKLQK 183

[Close]

BLAST of Cucsa.268980.1 vs. NCBI nr
Match: gi|778694571|ref|XP_004150520.2| (PREDICTED: MADS-box transcription factor 23-like [Cucumis sativus])

HSP 1 Score: 382.1 bits (980), Expect = 5.9e-103
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 1


Query: 1   MELDFPKETLDHPAQLPPSDSDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQL 60
           MELDFPKETLDHPAQLPPSDSDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQL
Sbjct: 91  MELDFPKETLDHPAQLPPSDSDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQL 150

Query: 61  REGIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNITLQESSPLQRS 120
           REGIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNITLQESSPLQRS
Sbjct: 151 REGIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNITLQESSPLQRS 210

Query: 121 YFSDSKTASTNETEVKTEVEENDRSEISLHLGLSLDGQRKRKRSVEGASTDTTCSQVELE 180
           YFSDSKTASTNETEVKTEVEENDRSEISLHLGLSLDGQRKRKRSVEGASTDTTCSQVELE
Sbjct: 211 YFSDSKTASTNETEVKTEVEENDRSEISLHLGLSLDGQRKRKRSVEGASTDTTCSQVELE 270

Query: 181 GDALLANDELSRHFGM 197
           GDALLANDELSRHFGM
Sbjct: 271 GDALLANDELSRHFGM 286

[Close]

BLAST of Cucsa.268980.1 vs. NCBI nr
Match: gi|700199477|gb|KGN54635.1| (hypothetical protein Csa_4G410880 [Cucumis sativus])

HSP 1 Score: 382.1 bits (980), Expect = 5.9e-103
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 1


Query: 1   MELDFPKETLDHPAQLPPSDSDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQL 60
           MELDFPKETLDHPAQLPPSDSDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQL
Sbjct: 13  MELDFPKETLDHPAQLPPSDSDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQL 72

Query: 61  REGIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNITLQESSPLQRS 120
           REGIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNITLQESSPLQRS
Sbjct: 73  REGIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNITLQESSPLQRS 132

Query: 121 YFSDSKTASTNETEVKTEVEENDRSEISLHLGLSLDGQRKRKRSVEGASTDTTCSQVELE 180
           YFSDSKTASTNETEVKTEVEENDRSEISLHLGLSLDGQRKRKRSVEGASTDTTCSQVELE
Sbjct: 133 YFSDSKTASTNETEVKTEVEENDRSEISLHLGLSLDGQRKRKRSVEGASTDTTCSQVELE 192

Query: 181 GDALLANDELSRHFGM 197
           GDALLANDELSRHFGM
Sbjct: 193 GDALLANDELSRHFGM 208

[Close]

BLAST of Cucsa.268980.1 vs. NCBI nr
Match: gi|659111559|ref|XP_008455789.1| (PREDICTED: MADS-box transcription factor 23-like [Cucumis melo])

HSP 1 Score: 368.6 bits (945), Expect = 6.7e-99
Identity = 190/196 (96.94%), Postives = 191/196 (97.45%), Query Frame = 1


Query: 1   MELDFPKETLDHPAQLPPSDSDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQL 60
           MELDFPKETLDHPAQLPPSDSDAKSSEEEI KLKLAYTQMRGQELDSLSFIDLQNLENQL
Sbjct: 91  MELDFPKETLDHPAQLPPSDSDAKSSEEEIEKLKLAYTQMRGQELDSLSFIDLQNLENQL 150

Query: 61  REGIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNITLQESSPLQRS 120
           REGIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQ RNNI  QESSPLQRS
Sbjct: 151 REGIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQQRNNIPRQESSPLQRS 210

Query: 121 YFSDSKTASTNETEVKTEVEENDRSEISLHLGLSLDGQRKRKRSVEGASTDTTCSQVELE 180
           YFSDSKTASTNETEVKTE EENDRSEISLHLGLSLDGQRKRKRSVEGASTDTTCS+VELE
Sbjct: 211 YFSDSKTASTNETEVKTEAEENDRSEISLHLGLSLDGQRKRKRSVEGASTDTTCSEVELE 270

Query: 181 GDALLANDELSRHFGM 197
           GDALLANDELSRHFGM
Sbjct: 271 GDALLANDELSRHFGM 286

[Close]

BLAST of Cucsa.268980.1 vs. NCBI nr
Match: gi|590635650|ref|XP_007028680.1| (AGAMOUS-like 18, putative [Theobroma cacao])

HSP 1 Score: 129.8 bits (325), Expect = 5.2e-27
Identity = 82/187 (43.85%), Postives = 109/187 (58.29%), Query Frame = 1


Query: 3   LDFPKETLDHPAQLPPSDS-------DAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQN 62
           L + + T + P+Q  PSD        D  + +EE  +L+ AY ++ G+ELD L+F +LQ 
Sbjct: 67  LRYSRGTTEDPSQEHPSDEHKNLQPIDVNTLKEEYLRLRAAYMRLNGKELDGLTFKELQQ 126

Query: 63  LENQLREGIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNITLQESS 122
           LE+QL EGI+S+K +KE +LLEQL+R R Q    I ENETLRKQ+ E Q   +  L E +
Sbjct: 127 LEHQLNEGILSVKQQKEQILLEQLKRSRLQERQAILENETLRKQIVELQQNTSSNLLEYN 186

Query: 123 PLQR-SYFSDSKTASTNETEVKTEVEENDRSEISLHLGLSLDGQRKRK-RSVEGASTDTT 181
           PLQR S +S          E     + ND S+ SLHLGL  D  RKRK   +E  S +TT
Sbjct: 187 PLQRVSPYSSKAEYDCASEEEDDHADNNDHSDTSLHLGLPSDVGRKRKVAKIEPVSNETT 246

[Close]

BLAST of Cucsa.268980.1 vs. NCBI nr
Match: gi|593689982|ref|XP_007145592.1| (hypothetical protein PHAVU_007G251600g [Phaseolus vulgaris])

HSP 1 Score: 123.6 bits (309), Expect = 3.8e-25
Identity = 73/170 (42.94%), Postives = 100/170 (58.82%), Query Frame = 1


Query: 8   ETLDHPAQLPPSD-----SDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQLRE 67
           ++ + P  +PP D      D    ++EI KL+ AY  M G+ELD LS  +LQ+LENQL E
Sbjct: 76  DSAEQPIDVPPKDVMVMEPDTNLLKDEITKLRSAYLNMMGKELDGLSLKELQHLENQLSE 135

Query: 68  GIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNITLQESSPLQRSYF 127
           GI+++K+KKE +L+EQL+R R Q +  + ENE LRKQLEE Q++      E S L RS+ 
Sbjct: 136 GILAVKEKKEQVLVEQLRRSRIQEQKAVLENEVLRKQLEEIQNKTKTQFLEFSSLDRSFS 195

Query: 128 SDSKTASTNETEVKTEVEENDRSEISLHLGLSLDGQRKRKRSVEGASTDT 173
            +S  +  N        EEND S+ SL L LS D  R+RK     A  D+
Sbjct: 196 KNSSKSLFN-----CASEENDHSDTSLQLALSTDYGRQRKELKIEACNDS 240

The following BLAST results are available for this feature:

BLAST of Cucsa.268980.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGL18_ARATH	4.9e-17	37.01	Agamous-like MADS-box protein AGL18 OS=Arabidopsis thaliana GN=AGL18 PE=2 SV=1	[more]
AGL15_BRANA	2.6e-10	31.58	Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1	[more]
AGL16_ARATH	1.9e-08	30.60	Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1	[more]
JOIN_SOLLC	4.2e-08	25.86	MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1	[more]
AGL24_ARATH	5.4e-08	27.48	MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1	[more]

BLAST of Cucsa.268980.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYB1_CUCSA	4.1e-103	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G410880 PE=4 SV=1	[more]
A0A061EXS7_THECC	3.7e-27	43.85	AGAMOUS-like 18, putative OS=Theobroma cacao GN=TCM_024579 PE=4 SV=1	[more]
V7BLX2_PHAVU	2.6e-25	42.94	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G251600g PE=4 SV=1	[more]
A0A067DSV8_CITSI	9.9e-25	43.75	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039982mg PE=4 SV=1	[more]
V4SC55_9ROSI	9.9e-25	43.75	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005698mg PE=4 SV=1	[more]

BLAST of Cucsa.268980.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57390.1	2.8e-18	37.01	AGAMOUS-like 18	[more]
AT3G57230.1	1.1e-09	30.60	AGAMOUS-like 16	[more]
AT4G24540.1	3.1e-09	27.48	AGAMOUS-like 24	[more]
AT2G22540.1	5.8e-08	30.95	K-box region and MADS-box transcription factor family protein	[more]
AT2G14210.1	1.7e-07	24.53	AGAMOUS-like 44	[more]

BLAST of Cucsa.268980.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778694571\|ref\|XP_004150520.2\|	5.9e-103	100.00	PREDICTED: MADS-box transcription factor 23-like [Cucumis sativus]	[more]
gi\|700199477\|gb\|KGN54635.1\|	5.9e-103	100.00	hypothetical protein Csa_4G410880 [Cucumis sativus]	[more]
gi\|659111559\|ref\|XP_008455789.1\|	6.7e-99	96.94	PREDICTED: MADS-box transcription factor 23-like [Cucumis melo]	[more]
gi\|590635650\|ref\|XP_007028680.1\|	5.2e-27	43.85	AGAMOUS-like 18, putative [Theobroma cacao]	[more]
gi\|593689982\|ref\|XP_007145592.1\|	3.8e-25	42.94	hypothetical protein PHAVU_007G251600g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002487	TF_Kbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048856	anatomical structure development
biological_process	GO:0007275	multicellular organism development
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.268980	Cucsa.268980	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.268980.1	Cucsa.268980.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.268980.1.CDS.7	Cucsa.268980.1.CDS.7	CDS
Cucsa.268980.1.CDS.6	Cucsa.268980.1.CDS.6	CDS
Cucsa.268980.1.CDS.5	Cucsa.268980.1.CDS.5	CDS
Cucsa.268980.1.CDS.4	Cucsa.268980.1.CDS.4	CDS
Cucsa.268980.1.CDS.3	Cucsa.268980.1.CDS.3	CDS
Cucsa.268980.1.CDS.2	Cucsa.268980.1.CDS.2	CDS
Cucsa.268980.1.CDS.1	Cucsa.268980.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 27..100 score: 2.1
IPR002487	Transcription factor, K-box	PROFILE	PS51297	K_BOX	coord: 16..106 score: 10
None	No IPR available	unknown	Coil	Coil	coord: 93..113 score: -coord: 53..73 scor
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 19..149 score: 2.6
None	No IPR available	PANTHER	PTHR11945:SF175	AGAMOUS-LIKE MADS-BOX PROTEIN AGL18	coord: 19..149 score: 2.6