Cucsa.261640.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTAATCTTGTATGCGCATACACACTTAAAAGAAAACCACAAGCACTCATGTCCATACACCACCCAACAAAATGGAAGAGCAAAACACAAACATCGTCACATTCTAGACTTTGTTTGTTCTACACTCATTTCTTCTTCCTGTTCTGAAAAATTTTGGGGAGAGGTTGCCCTCTCTTATGTTTATGTCATCAACTGCCTTCCTTCTCAGGTCATTCACAATGTTTTCCCCTTTGAACGACTATATGGTACTCCCCTCTTTTACTCTAATCTCAGAGTTTTTTATCGTGCATGTTTTGTGTTATTACATCCTTATGAATATACCAAACTTGAACATCGTGCTCATCTATGTTGTTTCTTGGGTTACGGTACTGAACATAAAGGATTTTTTtGTTGGGGTCTCATCTCTCAACAATTACGTATATCTCGTCGTGTAACTTTTTGGGAACATCGTATGTTTTCATTTTTTtCTTCTTTCCATGTATCTCTATCTAGTCCTTACCCATTCTTCATCGATCTGTCTACTAACTTATTTTCCACTTTTGGCTCACTACCTGACACTACATCTTGTCCTCTACCTATATATGAGCTCACTTAATCTAATTATATCTATGCGCTCTTGGATCTTCCATCTGCCCCTTGTGAAGGGCATGAATTTGCACCTGTTCGACAATCCACCCGGGTAAGAGAAACTTCTTCTCATCTTAAAGATTGTCATTGTTTTTCTACTATTATGTCTTTGATTGAACCTTCCTTGTATAAGGAAGCTAATAGTAACCACTTGTGGCAGCAAGCAATGGATGAAGAGCTTCAAGCCTTAGAAAAGACTCGTACTTGGGACTATGTTAATTTACCTCGTGAAAAGAAACCTATCACCTGCAAGTGGATTTTAAAATCAAAACGCACTATGATGACTTTATTGAACGATACAAAGCACGACTTGTGGCCAAAGGTTATTCTCATAAATATGACATTGATTATGAAGAAACATAGAGTAGCTCGAATGATGTATTTGTTCGCAGTCTTTTAGCCATCGTAGCTGCAAAACAATGGCCCCTCCTTCAAATGTATGTTAAAAATGTGTTCGATGTCTATATAAAACCACCATCTGGTACTACTCCTCTACCTCGTAAAGTGTCTTCTTCGTCGTGCTCTCTACGGTCTCAAACAGGCTCATCGAGCTTGGTTTGCGACATTCAGTTCCACTATTATCCAACTTGGGTTCACCTCCAACTCTCACGATTCAGCCTTATTTACTCGTCAGACATTTAATGGTATTGTTCTCTTTCTTTTATATGTTGATAACATGATTATTACATGTGATCACCCTTAAGCCATATCTAATTTGCAATGTTACCGGGGTAAGCACTTTGAGATTAAGGATTTAGGCACCCTCAACTATTATCTCAAGCAAAATATGCTTCTGACCTCCCAGTCGATCGATTTGGTATTACTGACTCAGCCACATCTTCAACACCTCTGGATCCAAATGTGCAACTCACTCCTTTTGATGGTGTTCCTTTGGACGATCCCACTTTGTATAGACAATTACGTTGGCAGCCTAATTTACTTAAATGTGACCCACTGAGATATTACATATGCAGTTCACATTGTTAGTCAATTCATTGCTGCTCTTCGTACTATTCCCTTCAATATTTTACCTCGTATTCTTCACTATATTAAAGGCACTTTGGGTCATG ATGGTAATCTTGTATGCGCATACACACTTAAAAGAAAACCACAAGCActcatgtccatacaccacccaacaaaatggaagagcaaaacacaaacatcgtcacattctagactttgtttgttctacactcatttcttcttcctgttctgaaaaattttggggagaggttgccctctcttatgtttatgtcatcaactgccttccttctcaggtcattcacaatgttttcccctttgaacgactatatggtactcccctcttttactctaatctcagagttttttatcgtgcatgttttgtgttattacatccttatgaatataccaaacttgaacatcgtgctcatctatgttgtttcttgggttacggtactgaacataaaggatttttttgttggggtctcatctctcaacaattacgtatatctcgtcgtgtaactttttgggaacatcggcatgaatttgcacctgttcgacaatccacccgggtaagagaaacttcttctcatcttaaagattgtcattgtttttctactattatgtctttgattgaaccttccttgtataaggaagctaatagtaaccacttgtggcagcaagcaatggaTGAAGAGCTTCAAGCCTTAGAAAAGACTCGTACTtgggactatgttaatttacctcgtgaaaagaaacctatcacctgcaaTCTTTTAGCCATCGTAGCTGCAAAACAATGGCCCCTCCTTCAAATGTATGTTAAAAATGTGTTCGATGTCTATATAAAACCACCATCTGGTACTACTCCTCTACCTCGTAAAgctcatcgagcttggtttgcgacattcagttccactattatccaacttgggttcacctccaactctcacgattcagccttatttactcgtcagacatttaatggtattgttctctttcttttatatgttgataacatgattattacATTCGATCGATTTggtattactgactcagccacatcttcaacacctctggatccaaatgtgcaactcactccttttgatggtgttcctttggacgatcccactttgtatagacaattacatattacatatgcagttcacattgttagtcaattcattgctgctcttcgtactattcccttcaatattttacctcgtattcttcactatattaaaggcactttgggtcatg ATGGTAATCTTGTATGCGCATACACACTTAAAAGAAAACCACAAGCACTCATGTCCATACACCACCCAACAAAATGGAAGAGCAAAACACAAACATCGTCACATTCTAGACTTTGTTTGTTCTACACTCATTTCTTCTTCCTGTTCTGAAAAATTTTGGGGAGAGGTTGCCCTCTCTTATGTTTATGTCATCAACTGCCTTCCTTCTCAGGTCATTCACAATGTTTTCCCCTTTGAACGACTATATGGTACTCCCCTCTTTTACTCTAATCTCAGAGTTTTTTATCGTGCATGTTTTGTGTTATTACATCCTTATGAATATACCAAACTTGAACATCGTGCTCATCTATGTTGTTTCTTGGGTTACGGTACTGAACATAAAGGATTTTTTtGTTGGGGTCTCATCTCTCAACAATTACGTATATCTCGTCGTGTAACTTTTTGGGAACATCGGCATGAATTTGCACCTGTTCGACAATCCACCCGGGTAAGAGAAACTTCTTCTCATCTTAAAGATTGTCATTGTTTTTCTACTATTATGTCTTTGATTGAACCTTCCTTGTATAAGGAAGCTAATAGTAACCACTTGTGGCAGCAAGCAATGGATGAAGAGCTTCAAGCCTTAGAAAAGACTCGTACTTGGGACTATGTTAATTTACCTCGTGAAAAGAAACCTATCACCTGCAATCTTTTAGCCATCGTAGCTGCAAAACAATGGCCCCTCCTTCAAATGTATGTTAAAAATGTGTTCGATGTCTATATAAAACCACCATCTGGTACTACTCCTCTACCTCGTAAAGCTCATCGAGCTTGGTTTGCGACATTCAGTTCCACTATTATCCAACTTGGGTTCACCTCCAACTCTCACGATTCAGCCTTATTTACTCGTCAGACATTTAATGGTATTGTTCTCTTTCTTTTATATGTTGATAACATGATTATTACATTCGATCGATTTGGTATTACTGACTCAGCCACATCTTCAACACCTCTGGATCCAAATGTGCAACTCACTCCTTTTGATGGTGTTCCTTTGGACGATCCCACTTTGTATAGACAATTACATATTACATATGCAGTTCACATTGTTAGTCAATTCATTGCTGCTCTTCGTACTATTCCCTTCAATATTTTACCTCGTATTCTTCACTATATTAAAGGCACTTTGGGTCATG MVILYAHTHLKENHKHSCPYTTQQNGRAKHKHRHILDFVCSTLISSSCSEKFWGEVALSYVYVINCLPSQVIHNVFPFERLYGTPLFYSNLRVFYRACFVLLHPYEYTKLEHRAHLCCFLGYGTEHKGFFCWGLISQQLRISRRVTFWEHRHEFAPVRQSTRVRETSSHLKDCHCFSTIMSLIEPSLYKEANSNHLWQQAMDEELQALEKTRTWDYVNLPREKKPITCNLLAIVAAKQWPLLQMYVKNVFDVYIKPPSGTTPLPRKAHRAWFATFSSTIIQLGFTSNSHDSALFTRQTFNGIVLFLLYVDNMIITFDRFGITDSATSSTPLDPNVQLTPFDGVPLDDPTLYRQLHITYAVHIVSQFIAALRTIPFNILPRILHYIKGTLGHX
BLAST of Cucsa.261640.1 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 7.3e-12 Identity = 44/136 (32.35%), Postives = 69/136 (50.74%), Query Frame = 1
HSP 2 Score: 39.7 bits (91), Expect = 8.9e-02 Identity = 27/83 (32.53%), Postives = 43/83 (51.81%), Query Frame = 1
BLAST of Cucsa.261640.1 vs. TrEMBL
Match: A5ALD7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039529 PE=4 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 1.1e-51 Identity = 147/409 (35.94%), Postives = 204/409 (49.88%), Query Frame = 1
BLAST of Cucsa.261640.1 vs. TrEMBL
Match: A5BYR2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014855 PE=4 SV=1) HSP 1 Score: 194.9 bits (494), Expect = 1.8e-46 Identity = 106/235 (45.11%), Postives = 140/235 (59.57%), Query Frame = 1
BLAST of Cucsa.261640.1 vs. TrEMBL
Match: A5BYR2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014855 PE=4 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 7.3e-19 Identity = 75/204 (36.76%), Postives = 105/204 (51.47%), Query Frame = 1
HSP 2 Score: 191.4 bits (485), Expect = 2.0e-45 Identity = 91/135 (67.41%), Postives = 106/135 (78.52%), Query Frame = 1
BLAST of Cucsa.261640.1 vs. TrEMBL
Match: A0A151UDP3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_047550 PE=4 SV=1) HSP 1 Score: 33.5 bits (75), Expect = 7.1e+02 Identity = 15/24 (62.50%), Postives = 17/24 (70.83%), Query Frame = 1
HSP 2 Score: 191.0 bits (484), Expect = 2.7e-45 Identity = 91/135 (67.41%), Postives = 106/135 (78.52%), Query Frame = 1
BLAST of Cucsa.261640.1 vs. TrEMBL
Match: A0A151SM08_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_002043 PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 5.4e-14 Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = 1
HSP 2 Score: 83.2 bits (204), Expect = 7.8e-13 Identity = 52/122 (42.62%), Postives = 63/122 (51.64%), Query Frame = 1
HSP 3 Score: 73.2 bits (178), Expect = 8.1e-10 Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 1
HSP 4 Score: 190.3 bits (482), Expect = 4.5e-45 Identity = 103/232 (44.40%), Postives = 135/232 (58.19%), Query Frame = 1
BLAST of Cucsa.261640.1 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8) HSP 1 Score: 51.6 bits (122), Expect = 1.3e-06 Identity = 23/45 (51.11%), Postives = 28/45 (62.22%), Query Frame = 1
HSP 2 Score: 47.4 bits (111), Expect = 2.4e-05 Identity = 30/86 (34.88%), Postives = 42/86 (48.84%), Query Frame = 1
BLAST of Cucsa.261640.1 vs. NCBI nr
Match: gi|147797365|emb|CAN71436.1| (hypothetical protein VITISV_039529 [Vitis vinifera]) HSP 1 Score: 212.2 bits (539), Expect = 1.6e-51 Identity = 147/409 (35.94%), Postives = 204/409 (49.88%), Query Frame = 1
BLAST of Cucsa.261640.1 vs. NCBI nr
Match: gi|659082601|ref|XP_008441928.1| (PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]) HSP 1 Score: 202.6 bits (514), Expect = 1.3e-48 Identity = 93/136 (68.38%), Postives = 109/136 (80.15%), Query Frame = 1
BLAST of Cucsa.261640.1 vs. NCBI nr
Match: gi|659082601|ref|XP_008441928.1| (PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]) HSP 1 Score: 81.3 bits (199), Expect = 4.3e-12 Identity = 37/56 (66.07%), Postives = 49/56 (87.50%), Query Frame = 1
HSP 2 Score: 201.1 bits (510), Expect = 3.7e-48 Identity = 92/136 (67.65%), Postives = 107/136 (78.68%), Query Frame = 1
BLAST of Cucsa.261640.1 vs. NCBI nr
Match: gi|659120975|ref|XP_008460441.1| (PREDICTED: uncharacterized protein LOC103499253 [Cucumis melo]) HSP 1 Score: 79.0 bits (193), Expect = 2.1e-11 Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 1
HSP 2 Score: 194.9 bits (494), Expect = 2.6e-46 Identity = 106/235 (45.11%), Postives = 140/235 (59.57%), Query Frame = 1
BLAST of Cucsa.261640.1 vs. NCBI nr
Match: gi|147791601|emb|CAN61929.1| (hypothetical protein VITISV_014855 [Vitis vinifera]) HSP 1 Score: 103.2 bits (256), Expect = 1.0e-18 Identity = 75/204 (36.76%), Postives = 105/204 (51.47%), Query Frame = 1
HSP 2 Score: 193.0 bits (489), Expect = 1.0e-45 Identity = 96/155 (61.94%), Postives = 113/155 (72.90%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
|