Cucsa.261640 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.261640
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationscaffold02265 : 27270 .. 28968 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATCTTGTATGCGCATACACACTTAAAAGAAAACCACAAGCACTCATGTCCATACACCACCCAACAAAATGGAAGAGCAAAACACAAACATCGTCACATTCTAGACTTTGTTTGTTCTACACTCATTTCTTCTTCCTGTTCTGAAAAATTTTGGGGAGAGGTTGCCCTCTCTTATGTTTATGTCATCAACTGCCTTCCTTCTCAGGTCATTCACAATGTTTTCCCCTTTGAACGACTATATGGTACTCCCCTCTTTTACTCTAATCTCAGAGTTTTTTATCGTGCATGTTTTGTGTTATTACATCCTTATGAATATACCAAACTTGAACATCGTGCTCATCTATGTTGTTTCTTGGGTTACGGTACTGAACATAAAGGATTTTTTtGTTGGGGTCTCATCTCTCAACAATTACGTATATCTCGTCGTGTAACTTTTTGGGAACATCGTATGTTTTCATTTTTTtCTTCTTTCCATGTATCTCTATCTAGTCCTTACCCATTCTTCATCGATCTGTCTACTAACTTATTTTCCACTTTTGGCTCACTACCTGACACTACATCTTGTCCTCTACCTATATATGAGCTCACTTAATCTAATTATATCTATGCGCTCTTGGATCTTCCATCTGCCCCTTGTGAAGGGCATGAATTTGCACCTGTTCGACAATCCACCCGGGTAAGAGAAACTTCTTCTCATCTTAAAGATTGTCATTGTTTTTCTACTATTATGTCTTTGATTGAACCTTCCTTGTATAAGGAAGCTAATAGTAACCACTTGTGGCAGCAAGCAATGGATGAAGAGCTTCAAGCCTTAGAAAAGACTCGTACTTGGGACTATGTTAATTTACCTCGTGAAAAGAAACCTATCACCTGCAAGTGGATTTTAAAATCAAAACGCACTATGATGACTTTATTGAACGATACAAAGCACGACTTGTGGCCAAAGGTTATTCTCATAAATATGACATTGATTATGAAGAAACATAGAGTAGCTCGAATGATGTATTTGTTCGCAGTCTTTTAGCCATCGTAGCTGCAAAACAATGGCCCCTCCTTCAAATGTATGTTAAAAATGTGTTCGATGTCTATATAAAACCACCATCTGGTACTACTCCTCTACCTCGTAAAGTGTCTTCTTCGTCGTGCTCTCTACGGTCTCAAACAGGCTCATCGAGCTTGGTTTGCGACATTCAGTTCCACTATTATCCAACTTGGGTTCACCTCCAACTCTCACGATTCAGCCTTATTTACTCGTCAGACATTTAATGGTATTGTTCTCTTTCTTTTATATGTTGATAACATGATTATTACATGTGATCACCCTTAAGCCATATCTAATTTGCAATGTTACCGGGGTAAGCACTTTGAGATTAAGGATTTAGGCACCCTCAACTATTATCTCAAGCAAAATATGCTTCTGACCTCCCAGTCGATCGATTTGGTATTACTGACTCAGCCACATCTTCAACACCTCTGGATCCAAATGTGCAACTCACTCCTTTTGATGGTGTTCCTTTGGACGATCCCACTTTGTATAGACAATTACGTTGGCAGCCTAATTTACTTAAATGTGACCCACTGAGATATTACATATGCAGTTCACATTGTTAGTCAATTCATTGCTGCTCTTCGTACTATTCCCTTCAATATTTTACCTCGTATTCTTCACTATATTAAAGGCACTTTGGGTCATG

mRNA sequence

ATGGTAATCTTGTATGCGCATACACACTTAAAAGAAAACCACAAGCActcatgtccatacaccacccaacaaaatggaagagcaaaacacaaacatcgtcacattctagactttgtttgttctacactcatttcttcttcctgttctgaaaaattttggggagaggttgccctctcttatgtttatgtcatcaactgccttccttctcaggtcattcacaatgttttcccctttgaacgactatatggtactcccctcttttactctaatctcagagttttttatcgtgcatgttttgtgttattacatccttatgaatataccaaacttgaacatcgtgctcatctatgttgtttcttgggttacggtactgaacataaaggatttttttgttggggtctcatctctcaacaattacgtatatctcgtcgtgtaactttttgggaacatcggcatgaatttgcacctgttcgacaatccacccgggtaagagaaacttcttctcatcttaaagattgtcattgtttttctactattatgtctttgattgaaccttccttgtataaggaagctaatagtaaccacttgtggcagcaagcaatggaTGAAGAGCTTCAAGCCTTAGAAAAGACTCGTACTtgggactatgttaatttacctcgtgaaaagaaacctatcacctgcaaTCTTTTAGCCATCGTAGCTGCAAAACAATGGCCCCTCCTTCAAATGTATGTTAAAAATGTGTTCGATGTCTATATAAAACCACCATCTGGTACTACTCCTCTACCTCGTAAAgctcatcgagcttggtttgcgacattcagttccactattatccaacttgggttcacctccaactctcacgattcagccttatttactcgtcagacatttaatggtattgttctctttcttttatatgttgataacatgattattacATTCGATCGATTTggtattactgactcagccacatcttcaacacctctggatccaaatgtgcaactcactccttttgatggtgttcctttggacgatcccactttgtatagacaattacatattacatatgcagttcacattgttagtcaattcattgctgctcttcgtactattcccttcaatattttacctcgtattcttcactatattaaaggcactttgggtcatg

Coding sequence (CDS)

ATGGTAATCTTGTATGCGCATACACACTTAAAAGAAAACCACAAGCACTCATGTCCATACACCACCCAACAAAATGGAAGAGCAAAACACAAACATCGTCACATTCTAGACTTTGTTTGTTCTACACTCATTTCTTCTTCCTGTTCTGAAAAATTTTGGGGAGAGGTTGCCCTCTCTTATGTTTATGTCATCAACTGCCTTCCTTCTCAGGTCATTCACAATGTTTTCCCCTTTGAACGACTATATGGTACTCCCCTCTTTTACTCTAATCTCAGAGTTTTTTATCGTGCATGTTTTGTGTTATTACATCCTTATGAATATACCAAACTTGAACATCGTGCTCATCTATGTTGTTTCTTGGGTTACGGTACTGAACATAAAGGATTTTTTtGTTGGGGTCTCATCTCTCAACAATTACGTATATCTCGTCGTGTAACTTTTTGGGAACATCGGCATGAATTTGCACCTGTTCGACAATCCACCCGGGTAAGAGAAACTTCTTCTCATCTTAAAGATTGTCATTGTTTTTCTACTATTATGTCTTTGATTGAACCTTCCTTGTATAAGGAAGCTAATAGTAACCACTTGTGGCAGCAAGCAATGGATGAAGAGCTTCAAGCCTTAGAAAAGACTCGTACTTGGGACTATGTTAATTTACCTCGTGAAAAGAAACCTATCACCTGCAATCTTTTAGCCATCGTAGCTGCAAAACAATGGCCCCTCCTTCAAATGTATGTTAAAAATGTGTTCGATGTCTATATAAAACCACCATCTGGTACTACTCCTCTACCTCGTAAAGCTCATCGAGCTTGGTTTGCGACATTCAGTTCCACTATTATCCAACTTGGGTTCACCTCCAACTCTCACGATTCAGCCTTATTTACTCGTCAGACATTTAATGGTATTGTTCTCTTTCTTTTATATGTTGATAACATGATTATTACATTCGATCGATTTGGTATTACTGACTCAGCCACATCTTCAACACCTCTGGATCCAAATGTGCAACTCACTCCTTTTGATGGTGTTCCTTTGGACGATCCCACTTTGTATAGACAATTACATATTACATATGCAGTTCACATTGTTAGTCAATTCATTGCTGCTCTTCGTACTATTCCCTTCAATATTTTACCTCGTATTCTTCACTATATTAAAGGCACTTTGGGTCATG

Protein sequence

MVILYAHTHLKENHKHSCPYTTQQNGRAKHKHRHILDFVCSTLISSSCSEKFWGEVALSYVYVINCLPSQVIHNVFPFERLYGTPLFYSNLRVFYRACFVLLHPYEYTKLEHRAHLCCFLGYGTEHKGFFCWGLISQQLRISRRVTFWEHRHEFAPVRQSTRVRETSSHLKDCHCFSTIMSLIEPSLYKEANSNHLWQQAMDEELQALEKTRTWDYVNLPREKKPITCNLLAIVAAKQWPLLQMYVKNVFDVYIKPPSGTTPLPRKAHRAWFATFSSTIIQLGFTSNSHDSALFTRQTFNGIVLFLLYVDNMIITFDRFGITDSATSSTPLDPNVQLTPFDGVPLDDPTLYRQLHITYAVHIVSQFIAALRTIPFNILPRILHYIKGTLGHX
Homology
[Close]
BLAST of Cucsa.261640 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.3e-12
Identity = 44/136 (32.35%), Postives = 69/136 (50.74%), Query Frame = 1 

Query: 14  HKHSCPYTTQQNGRAKHKHRHILDFVCSTLISSSCSEKFWGEVALSYVYVINCLPSQVIH 73
           H+ + P T Q NG A+  +R I++ V S L  +   + FWGE   +  Y+IN  PS  + 
Sbjct: 571 HEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLA 630

Query: 74  NVFPFERLYGTPLFYSNLRVFYRACFVLLHPYEYTKLEHRAHLCCFLGYGTEHKGFFCWG 133
              P        + YS+L+VF    F  +   + TKL+ ++  C F+GYG E  G+  W 
Sbjct: 631 FEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWD 690

Query: 134 LISQQLRISRRVTFWE 150
            + +++  SR V F E
Sbjct: 691 PVKKKVIRSRDVVFRE 706


HSP 2 Score: 39.7 bits (91), Expect = 8.9e-02
Identity = 27/83 (32.53%), Postives = 43/83 (51.81%), Query Frame = 1 

Query: 149 EHRHEFAPVRQSTRVRETSSHLKDCHCFSTIMSLIEPSLYKEANSN---HLWQQAMDEEL 208
           E +H+  P+R+S R R  S        +  I    EP   KE  S+   +   +AM EE+
Sbjct: 778 EEQHQ--PLRRSERPRVESRRYPSTE-YVLISDDREPESLKEVLSHPEKNQLMKAMQEEM 837

Query: 209 QALEKTRTWDYVNLPREKKPITC 229
           ++L+K  T+  V LP+ K+P+ C
Sbjct: 838 ESLQKNGTYKLVELPKGKRPLKC 857

[Close]
BLAST of Cucsa.261640 vs. TrEMBL
Match: A5ALD7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039529 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.1e-51
Identity = 147/409 (35.94%), Postives = 204/409 (49.88%), Query Frame = 1 

Query: 14  HKHSCPYTTQQNGRAKHKHRHILDFVCSTLISSSCSEKFWGEVALSYVYVINCLPSQVIH 73
           H  +CP T+QQNG A+ K RHILD V + L+       FWGE +L   + IN +PS VIH
Sbjct: 554 HHLTCPGTSQQNGXAERKLRHILDTVRALLLXXKIPAPFWGEXSLHXXHAINRIPSAVIH 613

Query: 74  NVFPFERLYGTPLFYSNLRVFYRACFVLLHPYEYTKLEHRAHLCCFLGYGTEHKGFFCWG 133
           N  P+ERL+G+P  Y +LR F  ACFVLL P+E+ KLE R+ L CFLGYG   KG+ C+ 
Sbjct: 614 NQTPYERLFGSPPNYHHLRSFGSACFVLLQPHEHNKLEPRSRLYCFLGYGETQKGYRCYD 673

Query: 134 LISQQL-----RISRRVTFWEHRHEFAPVRQSTRVRETSSHLKDCHCFSTIMSLIEPSLY 193
            +S Q+      +    TF  H  +F+P       R+ +    +            P+L 
Sbjct: 674 PVSHQIFPDESLVPSTNTFDPHL-DFSPDIFDASPRQVADEQINNELPHFEPGSPAPALP 733

Query: 194 KEANSN----HLWQQAMDEELQALEKTRTWDYVNLPREKKPITCNLL------------- 253
           ++   +    H  + AM EEL AL K  TWD + LP  +  + C  +             
Sbjct: 734 EDPPQDIPPRHSTRIAMKEELDALTKNHTWDLITLPPGQYVVGCKWIYKIKTRSDGSVER 793

Query: 254 --------AIVAAKQWPLLQMYVKNVF-------DVYIKPPSGTTPLPRKA--------- 313
                    + AA++W L QM VKN F       +VY +PP G +    K          
Sbjct: 794 YKAXLVAKXVAAARKWDLFQMDVKNAFLNGDLSEEVYTQPPPGLSVESNKVCHLRRALYG 853

Query: 314 ----HRAWFATFSSTIIQLGFTSNSHDSALFTRQTFNGIVLFLLYVDNMIITFDRFG--- 366
                RAWFA FSSTI +LG+T+  +DSALF R+T  G +L LLYVD+MIIT D      
Sbjct: 854 LKQXPRAWFAKFSSTIFRLGYTAXPYDSALFLRRTDKGTILLLLYVDDMIITDDDLSGIQ 913

[Close]
BLAST of Cucsa.261640 vs. TrEMBL
Match: A5BYR2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014855 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.8e-46
Identity = 106/235 (45.11%), Postives = 140/235 (59.57%), Query Frame = 1 

Query: 14  HKHSCPYTTQQNGRAKHKHRHILDFVCSTLISSSCSEKFWGEVALSYVYVINCLPSQVIH 73
           H  +CP T+QQNGRA+ K RHILD V + L+S+     FWGE +L  V+ IN +PS VIH
Sbjct: 620 HHLTCPGTSQQNGRAERKLRHILDTVRALLLSAKIPAPFWGEASLHAVHAINRIPSTVIH 679

Query: 74  NVFPFERLYGTPLFYSNLRVFYRACFVLLHPYEYTKLEHRAHLCCFLGYGTEHKGF---F 133
           N  P+ERL+G+P  Y +LR F  ACFVLL P+E+ KLE R+ LCCFLGYG   KG     
Sbjct: 680 NQTPYERLFGSPPNYHHLRSFGSACFVLLQPHEHNKLEPRSRLCCFLGYGETSKGTSLQI 739

Query: 134 CWGLISQQLRISRRVTFW-----------------EHRHEFAPVRQSTRVRETSSHLKDC 193
              L+  +L+++R  T +                   RH  +P+R  TRVR    HL D 
Sbjct: 740 SLMLLLDRLQMNRLFTSYPTLSLGPLLLLLPDLRSSTRHSTSPLR--TRVRSIPPHLLDY 799

Query: 194 HCFSTIMSLIEPSLYKEANSNHLWQQAMDEELQALEKTRTWDYVNLPREKKPITC 229
           HC++ + +L EP  Y+EA+++ LWQ AM EEL AL K  TWD V LP  +  + C
Sbjct: 800 HCYTALATLHEPQTYREASTDPLWQIAMKEELDALTKNHTWDLVTLPPGQSVVGC 852

[Close]
BLAST of Cucsa.261640 vs. TrEMBL
Match: A5BYR2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014855 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.3e-19
Identity = 75/204 (36.76%), Postives = 105/204 (51.47%), Query Frame = 1 

Query: 230  LLAIVAAKQWPLLQMYVKNVF-------DVYIKPPSGTTPLPRK-------------AHR 289
            LLA+ AA++W L QM VKN F       +VY++PP G +    K             A R
Sbjct: 902  LLAVAAARKWDLFQMDVKNAFLNGDLSEEVYMQPPPGLSIESNKVCHLRRALYGLKQAPR 961

Query: 290  AWFATFSSTIIQLGFTSNSHDSALFTRQTFNGIVLFLLYVDNMIITFDRFG----ITDSA 349
            AWFA FSSTI +LG+T++ +DSALF R+T  G +L LLYVD+MIIT D       + D  
Sbjct: 962  AWFAKFSSTIFRLGYTASPYDSALFLRRTDKGTILLLLYVDDMIITGDDLSGIQELKDFL 1021

Query: 350  TSSTPLDPNVQLTPFDGVPLDDPTLYRQLHITYAVHI------------------VSQFI 392
            +    +     L+ F G+ +   T    L+IT A +                   VSQ++
Sbjct: 1022 SQQFEMKDLGHLSYFLGLEITHST--DGLYITQAKYASNLLSQAGLTDSKTVDTPVSQYL 1081


HSP 2 Score: 191.4 bits (485), Expect = 2.0e-45
Identity = 91/135 (67.41%), Postives = 106/135 (78.52%), Query Frame = 1 

Query: 17  SCPYTTQQNGRAKHKHRHILDFVCSTLISSSCSEKFWGEVALSYVYVINCLPSQVIHNVF 76
           SCP T+QQNGRA+ KHRHILD + + LISSSC E+ WGE AL+ VYVIN LPS V+ N  
Sbjct: 441 SCPGTSQQNGRAERKHRHILDSIRAMLISSSCPERTWGEAALTAVYVINRLPSSVLGNKT 500

Query: 77  PFERLYGTPLFYSNLRVFYRACFVLLHPYEYTKLEHRAHLCCFLGYGTEHKGFFCWGLIS 136
           PFE L+GTP  Y +LRVF  ACFVLL P+EYTKL+ RA LCCFLGYGTEHKG+  W  IS
Sbjct: 501 PFECLFGTPPSYESLRVFGCACFVLLQPHEYTKLQPRARLCCFLGYGTEHKGYRVWDPIS 560

Query: 137 QQLRISRRVTFWEHR 152
           Q++RISR V FWEH+
Sbjct: 561 QRIRISRHVVFWEHK 575

[Close]
BLAST of Cucsa.261640 vs. TrEMBL
Match: A0A151UDP3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_047550 PE=4 SV=1)

HSP 1 Score: 33.5 bits (75), Expect = 7.1e+02
Identity = 15/24 (62.50%), Postives = 17/24 (70.83%), Query Frame = 1 

Query: 162 RVRETSSHLKDCHCFSTIMSLIEP 186
           RVR    +L+D HCFSTIMS  EP
Sbjct: 649 RVRNPPFYLRDYHCFSTIMSHYEP 672


HSP 2 Score: 191.0 bits (484), Expect = 2.7e-45
Identity = 91/135 (67.41%), Postives = 106/135 (78.52%), Query Frame = 1 

Query: 17  SCPYTTQQNGRAKHKHRHILDFVCSTLISSSCSEKFWGEVALSYVYVINCLPSQVIHNVF 76
           SCP T+QQNGRA+ KHRHILD + + LISSSC E+ WGE AL+ VYVIN LPS V+ +  
Sbjct: 435 SCPGTSQQNGRAERKHRHILDSIRAMLISSSCPERTWGEAALTAVYVINRLPSSVLGDKT 494

Query: 77  PFERLYGTPLFYSNLRVFYRACFVLLHPYEYTKLEHRAHLCCFLGYGTEHKGFFCWGLIS 136
           PFERL+GTP  Y +LRVF  ACFVLL P+EYTKL+ RA LCCFLGYGTEHKG+  W  IS
Sbjct: 495 PFERLFGTPPSYESLRVFGCACFVLLQPHEYTKLQPRARLCCFLGYGTEHKGYRVWDPIS 554

Query: 137 QQLRISRRVTFWEHR 152
           Q +RISR V FWEH+
Sbjct: 555 QCIRISRHVVFWEHK 569

[Close]
BLAST of Cucsa.261640 vs. TrEMBL
Match: A0A151SM08_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_002043 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.4e-14
Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = 1 

Query: 230 LLAIVAAKQWPLLQMYVKNVF-------DVYIKPPSGTTPLPRK-------------AHR 289
           LLAI A+K+W + QM VKN F       +VY++PP G +  P K             A R
Sbjct: 759 LLAIAASKKWFIDQMDVKNAFLNGDLDAEVYMQPPPGYSCPPHKVCRLRKALYGLKQAPR 818

Query: 290 AWFATFSSTIIQLGFTSNSHDSALFTRQTFNGIVLFLLYVDNMIITFD 318
           +WFA F  TI QLGFTS+++D+ALF R+  +G V+ LLYVD+MIIT D
Sbjct: 819 SWFAKFHDTIAQLGFTSSTYDNALFIRRNDHGTVILLLYVDDMIITGD 866


HSP 2 Score: 83.2 bits (204), Expect = 7.8e-13
Identity = 52/122 (42.62%), Postives = 63/122 (51.64%), Query Frame = 1 

Query: 282  LGFTSNSHDSALFTRQTFNGIVLFLLYVDNMIITFDRFGITDSATSSTPLDPNVQLTPFD 341
            LG    S D  LF  Q          Y  ++I    R G+TD  T STPL+     TP D
Sbjct: 894  LGIQILSCDDGLFLSQA--------KYASDLI---SRAGLTDCKTESTPLETRAHFTPLD 953

Query: 342  GVPLDDPTLYRQL------------HITYAVHIVSQFIAALRTIPFNILPRILHYIKGTL 392
            G PL+DPTLYRQL             I YAVH+VSQF+ A R+  F  + RI+ YIKGT+
Sbjct: 954  GTPLEDPTLYRQLVGSLIYLTVTRPDIAYAVHLVSQFMCAPRSTHFAAVLRIIRYIKGTI 1004


HSP 3 Score: 73.2 bits (178), Expect = 8.1e-10
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 1 

Query: 162 RVRETSSHLKDCHCFSTIMSLIEPSLYKEANSNHLWQQAMDEELQALEKTRTWDYVNLPR 221
           RVR+  S+L D H FSTIMS  EP  Y+EA+++  W+++M  ELQALE T TWD V+ P 
Sbjct: 643 RVRKPPSYLHDYHYFSTIMSHYEPQTYREASADPKWRESMQAELQALENTNTWDLVDHPP 702

Query: 222 EKKPITC 229
           +K  ++C
Sbjct: 703 DKNLMSC 709


HSP 4 Score: 190.3 bits (482), Expect = 4.5e-45
Identity = 103/232 (44.40%), Postives = 135/232 (58.19%), Query Frame = 1 

Query: 14  HKHSCPYTTQQNGRAKHKHRHILDFVCSTLISSSCSEKFWGEVALSYVYVINCLPSQVIH 73
           H  +CP T+QQNGRA+ K RHILD V + L+S+     FWGE AL  V+ IN +PS VIH
Sbjct: 319 HHLTCPGTSQQNGRAERKLRHILDTVRALLLSAKIPAPFWGEAALHAVHAINRIPSAVIH 378

Query: 74  NVFPFERLYGTPLFYSNLRVFYRACFVLLHPYEYTKLEHRAHLCCFLGYGTEHKGFFCWG 133
           N  P+ERL+G+P  Y +LR F  ACFVLL  +E+ KLE R+ LCCFLGYG   KG+ C+ 
Sbjct: 379 NQTPYERLFGSPPVYHHLRSFGSACFVLLQSHEHNKLEPRSRLCCFLGYGETQKGYRCYD 438

Query: 134 LISQQLRISRRVTFWEHRH--EFAPVRQST------RVRETSSHLKDCHCFSTIMSLI-- 193
            +S +LR+S  V FWEHR   E +  R S        +    S +   + F   +     
Sbjct: 439 PVSHRLRVSHNVVFWEHRLFVELSHFRSSLTNSSVLEIFPDESLVPSTNTFDPPLDFSPD 498

Query: 194 -------EPSLYKEANSNHLWQQAMDEELQALEKTRTWDYVNLPREKKPITC 229
                  +P  Y+EA+++ LWQ AM EEL AL K  TWD V LP  +  + C
Sbjct: 499 IFDASPRQPQTYREASTDPLWQIAMKEELDALTKNHTWDLVPLPPGQSVVGC 550

[Close]
BLAST of Cucsa.261640 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 51.6 bits (122), Expect = 1.3e-06
Identity = 23/45 (51.11%), Postives = 28/45 (62.22%), Query Frame = 1 

Query: 184 EPSLYKEANSNHLWQQAMDEELQALEKTRTWDYVNLPREKKPITC 229
           EPS Y EA    +W  AMD+E+ A+E T TW+   LP  KKPI C
Sbjct: 85  EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGC 129


HSP 2 Score: 47.4 bits (111), Expect = 2.4e-05
Identity = 30/86 (34.88%), Postives = 42/86 (48.84%), Query Frame = 1 

Query: 317 DRFGITDSATSSTPLDPNVQLTPFDGVPLDDPTLYRQL------------HITYAVHIVS 376
           D  G+     SS P+DP+V  +   G    D   YR+L             I++AV+ +S
Sbjct: 344 DETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLS 403

Query: 377 QFIAALRTIPFNILPRILHYIKGTLG 391
           QF  A R      + +ILHYIKGT+G
Sbjct: 404 QFSEAPRLAHQQAVMKILHYIKGTVG 429

[Close]
BLAST of Cucsa.261640 vs. NCBI nr
Match: gi|147797365|emb|CAN71436.1| (hypothetical protein VITISV_039529 [Vitis vinifera])

HSP 1 Score: 212.2 bits (539), Expect = 1.6e-51
Identity = 147/409 (35.94%), Postives = 204/409 (49.88%), Query Frame = 1 

Query: 14  HKHSCPYTTQQNGRAKHKHRHILDFVCSTLISSSCSEKFWGEVALSYVYVINCLPSQVIH 73
           H  +CP T+QQNG A+ K RHILD V + L+       FWGE +L   + IN +PS VIH
Sbjct: 554 HHLTCPGTSQQNGXAERKLRHILDTVRALLLXXKIPAPFWGEXSLHXXHAINRIPSAVIH 613

Query: 74  NVFPFERLYGTPLFYSNLRVFYRACFVLLHPYEYTKLEHRAHLCCFLGYGTEHKGFFCWG 133
           N  P+ERL+G+P  Y +LR F  ACFVLL P+E+ KLE R+ L CFLGYG   KG+ C+ 
Sbjct: 614 NQTPYERLFGSPPNYHHLRSFGSACFVLLQPHEHNKLEPRSRLYCFLGYGETQKGYRCYD 673

Query: 134 LISQQL-----RISRRVTFWEHRHEFAPVRQSTRVRETSSHLKDCHCFSTIMSLIEPSLY 193
            +S Q+      +    TF  H  +F+P       R+ +    +            P+L 
Sbjct: 674 PVSHQIFPDESLVPSTNTFDPHL-DFSPDIFDASPRQVADEQINNELPHFEPGSPAPALP 733

Query: 194 KEANSN----HLWQQAMDEELQALEKTRTWDYVNLPREKKPITCNLL------------- 253
           ++   +    H  + AM EEL AL K  TWD + LP  +  + C  +             
Sbjct: 734 EDPPQDIPPRHSTRIAMKEELDALTKNHTWDLITLPPGQYVVGCKWIYKIKTRSDGSVER 793

Query: 254 --------AIVAAKQWPLLQMYVKNVF-------DVYIKPPSGTTPLPRKA--------- 313
                    + AA++W L QM VKN F       +VY +PP G +    K          
Sbjct: 794 YKAXLVAKXVAAARKWDLFQMDVKNAFLNGDLSEEVYTQPPPGLSVESNKVCHLRRALYG 853

Query: 314 ----HRAWFATFSSTIIQLGFTSNSHDSALFTRQTFNGIVLFLLYVDNMIITFDRFG--- 366
                RAWFA FSSTI +LG+T+  +DSALF R+T  G +L LLYVD+MIIT D      
Sbjct: 854 LKQXPRAWFAKFSSTIFRLGYTAXPYDSALFLRRTDKGTILLLLYVDDMIITDDDLSGIQ 913

[Close]
BLAST of Cucsa.261640 vs. NCBI nr
Match: gi|659082601|ref|XP_008441928.1| (PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo])

HSP 1 Score: 202.6 bits (514), Expect = 1.3e-48
Identity = 93/136 (68.38%), Postives = 109/136 (80.15%), Query Frame = 1 

Query: 15  KHSCPYTTQQNGRAKHKHRHILDFVCSTLISSSCSEKFWGEVALSYVYVINCLPSQVIHN 74
           + SCP+T+QQNGRA+ KHRHILD V + L+S+SC EKFWGE AL+ VY IN LPS V+ N
Sbjct: 386 QRSCPHTSQQNGRAERKHRHILDSVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQN 445

Query: 75  VFPFERLYGTPLFYSNLRVFYRACFVLLHPYEYTKLEHRAHLCCFLGYGTEHKGFFCWGL 134
           + PFE+LYGTP  YSNL+ F  ACFVLLHP+E+TKLE R  L CFLGYGTEHKGF CW  
Sbjct: 446 ISPFEKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLYCFLGYGTEHKGFRCWNP 505

Query: 135 ISQQLRISRRVTFWEH 151
           +S +LRISR VTFWEH
Sbjct: 506 LSNRLRISRHVTFWEH 521

[Close]
BLAST of Cucsa.261640 vs. NCBI nr
Match: gi|659082601|ref|XP_008441928.1| (PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 4.3e-12
Identity = 37/56 (66.07%), Postives = 49/56 (87.50%), Query Frame = 1 

Query: 156 PVRQSTRVRETSSHLKDCHCFSTIMSLIEPSLYKEANSNHLWQQAMDEELQALEKT 212
           P R+STRVRE   HL+D HCFSTI+SL+EP+ Y+EA+++ LWQ+AM++ELQALEKT
Sbjct: 587 PPRRSTRVREPPIHLQDYHCFSTIISLVEPTSYQEASTDPLWQKAMNDELQALEKT 642


HSP 2 Score: 201.1 bits (510), Expect = 3.7e-48
Identity = 92/136 (67.65%), Postives = 107/136 (78.68%), Query Frame = 1 

Query: 15  KHSCPYTTQQNGRAKHKHRHILDFVCSTLISSSCSEKFWGEVALSYVYVINCLPSQVIHN 74
           + SCP+T+QQNGR + KHR ILD V   L+S+SC EKFWGE AL+YVY IN LPS V+ N
Sbjct: 444 QRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTYVYTINHLPSSVLQN 503

Query: 75  VFPFERLYGTPLFYSNLRVFYRACFVLLHPYEYTKLEHRAHLCCFLGYGTEHKGFFCWGL 134
           + PFE+LYG PL YSNL+ F  ACFVLLHP+E+TKLE R HL  FLGYGTEHKGF CW  
Sbjct: 504 ISPFEKLYGNPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDP 563

Query: 135 ISQQLRISRRVTFWEH 151
           +S +LRISR VTFWEH
Sbjct: 564 LSNRLRISRHVTFWEH 579

[Close]
BLAST of Cucsa.261640 vs. NCBI nr
Match: gi|659120975|ref|XP_008460441.1| (PREDICTED: uncharacterized protein LOC103499253 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 2.1e-11
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 1 

Query: 156 PVRQSTRVRETSSHLKDCHCFSTIMSLIEPSLYKEANSNHLWQQAMDEELQALEKTRT 214
           P   STRVRE   HL+D HCFSTI+SL+EP+ Y+EA++N LWQ+AM++ELQALE T T
Sbjct: 645 PPYHSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEITHT 702


HSP 2 Score: 194.9 bits (494), Expect = 2.6e-46
Identity = 106/235 (45.11%), Postives = 140/235 (59.57%), Query Frame = 1 

Query: 14  HKHSCPYTTQQNGRAKHKHRHILDFVCSTLISSSCSEKFWGEVALSYVYVINCLPSQVIH 73
           H  +CP T+QQNGRA+ K RHILD V + L+S+     FWGE +L  V+ IN +PS VIH
Sbjct: 620 HHLTCPGTSQQNGRAERKLRHILDTVRALLLSAKIPAPFWGEASLHAVHAINRIPSTVIH 679

Query: 74  NVFPFERLYGTPLFYSNLRVFYRACFVLLHPYEYTKLEHRAHLCCFLGYGTEHKGF---F 133
           N  P+ERL+G+P  Y +LR F  ACFVLL P+E+ KLE R+ LCCFLGYG   KG     
Sbjct: 680 NQTPYERLFGSPPNYHHLRSFGSACFVLLQPHEHNKLEPRSRLCCFLGYGETSKGTSLQI 739

Query: 134 CWGLISQQLRISRRVTFW-----------------EHRHEFAPVRQSTRVRETSSHLKDC 193
              L+  +L+++R  T +                   RH  +P+R  TRVR    HL D 
Sbjct: 740 SLMLLLDRLQMNRLFTSYPTLSLGPLLLLLPDLRSSTRHSTSPLR--TRVRSIPPHLLDY 799

Query: 194 HCFSTIMSLIEPSLYKEANSNHLWQQAMDEELQALEKTRTWDYVNLPREKKPITC 229
           HC++ + +L EP  Y+EA+++ LWQ AM EEL AL K  TWD V LP  +  + C
Sbjct: 800 HCYTALATLHEPQTYREASTDPLWQIAMKEELDALTKNHTWDLVTLPPGQSVVGC 852

[Close]
BLAST of Cucsa.261640 vs. NCBI nr
Match: gi|147791601|emb|CAN61929.1| (hypothetical protein VITISV_014855 [Vitis vinifera])

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-18
Identity = 75/204 (36.76%), Postives = 105/204 (51.47%), Query Frame = 1 

Query: 230  LLAIVAAKQWPLLQMYVKNVF-------DVYIKPPSGTTPLPRK-------------AHR 289
            LLA+ AA++W L QM VKN F       +VY++PP G +    K             A R
Sbjct: 902  LLAVAAARKWDLFQMDVKNAFLNGDLSEEVYMQPPPGLSIESNKVCHLRRALYGLKQAPR 961

Query: 290  AWFATFSSTIIQLGFTSNSHDSALFTRQTFNGIVLFLLYVDNMIITFDRFG----ITDSA 349
            AWFA FSSTI +LG+T++ +DSALF R+T  G +L LLYVD+MIIT D       + D  
Sbjct: 962  AWFAKFSSTIFRLGYTASPYDSALFLRRTDKGTILLLLYVDDMIITGDDLSGIQELKDFL 1021

Query: 350  TSSTPLDPNVQLTPFDGVPLDDPTLYRQLHITYAVHI------------------VSQFI 392
            +    +     L+ F G+ +   T    L+IT A +                   VSQ++
Sbjct: 1022 SQQFEMKDLGHLSYFLGLEITHST--DGLYITQAKYASNLLSQAGLTDSKTVDTPVSQYL 1081


HSP 2 Score: 193.0 bits (489), Expect = 1.0e-45
Identity = 96/155 (61.94%), Postives = 113/155 (72.90%), Query Frame = 1 

Query: 17  SCPYTTQQNGRAKHKHRHILDFVCSTLISSSCSEKFWGEVALSYVYVINCLPSQVIHNVF 76
           SCP T+QQNGR + KH+HILD V + LISSSC E+FWGE AL  VY IN +PS VI N+ 
Sbjct: 403 SCPGTSQQNGRVERKHKHILDIVRALLISSSCPERFWGETALIAVYTINRIPSPVIGNIS 462

Query: 77  PFERLYGTPLFYSNLRVFYRACFVLLHPYEYTKLEHRAHLCCFLGYGTEHKGFFCWGLIS 136
           P+ERLYG  L Y +L VF  ACFVLL P+E+TK E +A LCCFLGYG EHKG+ CW  +S
Sbjct: 463 PYERLYGHCLDYQSLHVFGCACFVLLQPHEHTKSEPKARLCCFLGYGIEHKGYRCWDPLS 522

Query: 137 QQLRISRRVTFWEHR--HEFAPVRQSTRVRETSSH 170
           QQLRISR VTFWEH+     +P R +T    TSSH
Sbjct: 523 QQLRISRHVTFWEHKIFSSLSPFRVTT----TSSH 553

The following BLAST results are available for this feature:
BLAST of Cucsa.261640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC7.3e-1232.35Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of Cucsa.261640 vs. TrEMBL
Match NameE-valueIdentityDescription
A5ALD7_VITVI1.1e-5135.94Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039529 PE=4 SV=1[more]
A5BYR2_VITVI1.8e-4645.11Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014855 PE=4 SV=1[more]
A5BYR2_VITVI7.3e-1936.76Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014855 PE=4 SV=1[more]
A0A151UDP3_CAJCA7.1e+0262.50Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151SM08_CAJCA5.4e-1447.22Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
BLAST of Cucsa.261640 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.11.3e-0651.11 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
BLAST of Cucsa.261640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147797365|emb|CAN71436.1|1.6e-5135.94hypothetical protein VITISV_039529 [Vitis vinifera][more]
gi|659082601|ref|XP_008441928.1|1.3e-4868.38PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo][more]
gi|659082601|ref|XP_008441928.1|4.3e-1266.07PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo][more]
gi|659120975|ref|XP_008460441.1|2.1e-1163.79PREDICTED: uncharacterized protein LOC103499253 [Cucumis melo][more]
gi|147791601|emb|CAN61929.1|1.0e-1836.76hypothetical protein VITISV_014855 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR013103RVT_2
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0097159 organic cyclic compound binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.261640.1Cucsa.261640.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 11..84
score: 4.
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 10..94
score: 8.72
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 265..318
score: 8.3
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 17..390
score: 1.0
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 17..390
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.261640Wild cucumber (PI 183967)cgycpiB398
Cucsa.261640Cucumber (Chinese Long) v2cgycuB378
Cucsa.261640Cucumber (Chinese Long) v3cgycucB403