Cucsa.256810.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.256810.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	At5g17610
Location	scaffold02229 : 4312531 .. 4314599 (+)
Sequence length	824

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGGAATGTGAATTTGATCAACAACGATGGAAGTCAACAATTCTTCGAGAAATTCAAAGCTTCTCAACACACTCAAACCCTTGATCCTTCTAGGGTTAATCTTCTCATTGCTCACTACCCATACAGTTCTCGCCAAATCTCGCCGTCCAGTCACTGTAAGTTTTGTTTGTTCCTCTTCTCGGATCGTGATTTTCTTCATCTTCACTTGATTCTATCGAATTGTATTTCAATTATTCAGGATGCTGAAACCCGGCAAAAGAAGCAGGAGTGTTACGCCGATATCGAGAGGTTAGCGTTTACTTCAAGCTATTTtAGGGTTTTTTTTtAGTGTACCTGGAAAATGTAATCTCTCCTTTTTTTTtATCATACCTGCTACTGCTTTGATTGGTTATGATAATTTGTTGAAAATGTGCAGTGGATTGTGGGGTTGGCAATGCAGATCTTCAACTACCGAAAAGGAAAATTGTGCCCTGCGATGTCTTTCTCCTACTTGTTACGATCTAGTTTATGGTAGTGATCCGGTGAGATTATGTTTTTTTTtATTGTTTTGTGCTCATATTTCTCTGGCTGTTCTTCTTTAATTGATCAGTGAATGAGTTTAACGTTGGATTTGTGTTGATGTAGCTCGAGGAAGGAGAGAAGGACCTTGCTAGGAGTCAAGAGTACAAGTATTGTATATATAAGTAAGTAGAGTATTTTTGTTCAATTTTCCAGAAAAGAAAGTTGATTATTTCTTATATGAAATATTGGTTTGCTGTCCGGAACTAGACATGGGTCGTTTTGGCTGTTACTTTCAATTTCATTCTTTTCACCGTTCACTTCGTCCTCCAACCATTTGAATAGGAATTTGGAAATGTTTTTGCGTGGTTCACTAGTTCATGTAATACGTTCTCTATCCAGTCTTCAAATGCTATATCATCAGAATAGAGTTTGTTTGCAAGGATCTTTGAATCTGGCCACTGGTTATATTCTGGTTGCTTCTTAAATCATGGGGGAGCTATAATGTATAAATCACTCTGCATATCTTATATGCTTTGAAGTTCTACTAAATCGGAGATCTCACACCATGTTTAGTTCCACTGTGAAATTTTTAACCATTCGAGAATCAAAATGGTATCCTATTATTTCCTCACTTGCTTCCTTCCCCCTTTCTGTGCTTACAAGGAACTAAAGCTGCACAGTTGAATCTGAATCATCTGACCATTAGTGTATAACTTGCTAGAGGATTTGCTATCTTTCTATAGGCCTTGTTGAATGTGTGTTTAATCATTTGGGATCTAAGGTGCTTTTGCATATTGTTGCCCCCATTCCTCAACGCAACCCTTTCCAATACTTCTCTTCCCTTCGTTTCCAAAGGAGTATTAAGCAAGAAGAGTATTTCACCGTACGAAATTTCTGGAGCAGGATCTGTTCTGAAGGTTTTACAACTGTATCCTTGAGTTCTAATTAGTAGAGTGTTCCTTGTCTGGTTGAGCTCTATAATAGATGTTTTTCATCTATTTGTCATTTCAGTTAGGTTTGTGCATCCAGAGGAGATTAGTCGAGAGAAACTTTTTGAAAGTACCATACATGTATCTCGATCTAATTGATTACAGTCAATTATAGTTCAGTTTCAATTTATATTTGAAAGAAAACATAACATTAATGAACCAACCTTACAGACCTTCAGTATTTGGGATTTGTTGAATTTAAAGTGTGAAATCATTGTTTGGTTGCAGGTTGTCAATGGGGGAGAGTCTAGAGGGTATTAAGGGATCCTTTGACTACTGATGTTTTTGAAGATTGTCTGTGCTATTTAACTGTCTGATGTTCCATTATGCCCTGTCCTTCTGACTGCCTTTTAGCATTTGGGTCAAAATATAAGGTACAATTCCATAATCCCCAGTTCATATTTTTCTTCCTTTCTCTCTCTTTCTCTCCACATTAAATCGAGAAATATGATTACAGCAACAAAGGAATGAAAAGCTTGGAATGGAAATGGCAACTACTTATAAAAAaTTCAATTAATGAGTGCAACTTTAACCTTTTCTTAAGTAGATTACAATAGTTTGAATTGCAAATTTAGGCC

mRNA sequence

GGGGGAATGTGAATTTGATCAACAACGATGGAAGTCAACAATTCTTCGAGAAATTCAAAGCTTCTCAACACACTCAAACCCTTGATCCTTCTAGGGTTAATCTTCTCATTGCTCACTACCCATACAGTTCTCGCCAAATCTCGCCGTCCAGTCACTGATGCTGAAACCCGGCAAAAGAAGCAGGAGTGTTACGCCGATATCGAGAGTGGATTGTGGGGTTGGCAATGCAGATCTTCAACTACCGAAAAGGAAAATTGTGCCCTGCGATGTCTTTCTCCTACTTGTTACGATCTAGTTTATGGTAGTGATCCGGTGAGATTATGTTTTTTTTTATTGTTTTGTGCTCATATTTCTCTGGCTGTTCTTCTTTAATTGATCAGTGAATGAGTTTAACGTTGGATTTGTGTTGATGTAGCTCGAGGAAGGAGAGAAGGACCTTGCTAGGAGTCAAGAGTACAAGTATTGTATATATAAGTTGTCAATGGGGGAGAGTCTAGAGGGTATTAAGGGATCCTTTGACTACTGATGTTTTTGAAGATTGTCTGTGCTATTTAACTGTCTGATGTTCCATTATGCCCTGTCCTTCTGACTGCCTTTTAGCATTTGGGTCAAAATATAAGGTACAATTCCATAATCCCCAGTTCATATTTTTCTTCCTTTCTCTCTCTTTCTCTCCACATTAAATCGAGAAATATGATTACAGCAACAAAGGAATGAAAAGCTTGGAATGGAAATGGCAACTACTTATAAAAAATTCAATTAATGAGTGCAACTTTAACCTTTTCTTAAGTAGATTACaatagtttgaattgcaaatttaggcc

Coding sequence (CDS)

ATGGAAGTCAACAATTCTTCGAGAAATTCAAAGCTTCTCAACACACTCAAACCCTTGATCCTTCTAGGGTTAATCTTCTCATTGCTCACTACCCATACAGTTCTCGCCAAATCTCGCCGTCCAGTCACTGATGCTGAAACCCGGCAAAAGAAGCAGGAGTGTTACGCCGATATCGAGAGTGGATTGTGGGGTTGGCAATGCAGATCTTCAACTACCGAAAAGGAAAATTGTGCCCTGCGATGTCTTTCTCCTACTTGTTACGATCTAGTTTATGGTAGTGATCCGGTGAGATTATGTTTTTTTTtATTGTTTTGTGCTCATATTTCTCTGGCTGTTCTTCTTTAA

Protein sequence

MEVNNSSRNSKLLNTLKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIESGLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPVRLCFFLLFCAHISLAVLL*

Homology

[Close]

BLAST of Cucsa.256810.2 vs. TrEMBL
Match: A0A0A0L9A0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129480 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.7e-48
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1  MEVNNSSRNSKLLNTLKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIES 60
          MEVNNSSRNSKLLNTLKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIES
Sbjct: 1  MEVNNSSRNSKLLNTLKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIES 60

Query: 61 GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPV 97
          GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDP+
Sbjct: 61 GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPL 96

[Close]

BLAST of Cucsa.256810.2 vs. TrEMBL
Match: M5XRP1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013906mg PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-24
Identity = 57/91 (62.64%), Postives = 73/91 (80.22%), Query Frame = 1


Query: 6  SSRNSKLLNTLKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIESGLWGW 65
          ++++S   ++L   +LL L+  LL+  TVLAKSRRP++D ETRQKK +CYADIESGLWGW
Sbjct: 2  ANQHSSCSSSLGSPVLLVLLLLLLSP-TVLAKSRRPISDMETRQKKNQCYADIESGLWGW 61

Query: 66 QCRSSTTEKENCALRCLSPTCYDLVYGSDPV 97
          QC++S   KENCA+RCLS TCY+LVY SDPV
Sbjct: 62 QCKASLIAKENCAVRCLSSTCYELVYESDPV 91

[Close]

BLAST of Cucsa.256810.2 vs. TrEMBL
Match: C5WSN4_SORBI (Putative uncharacterized protein Sb01g042484 OS=Sorghum bicolor GN=Sb01g042484 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-23
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 1


Query: 21 LLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIESGLWGWQCRSSTTEKENCALR 80
          LL L F+LL   T    SRRP++D E RQKK+ CY D+E+GLWGW CRSS TEKENC LR
Sbjct: 23 LLVLTFALLVVSTAAKSSRRPISDNEIRQKKEACYTDVENGLWGWVCRSSPTEKENCVLR 82

Query: 81 CLSPTCYDLVYGSDPV 97
          CLSP CYDL+YG DP+
Sbjct: 83 CLSPECYDLIYGGDPL 98

[Close]

BLAST of Cucsa.256810.2 vs. TrEMBL
Match: A0A061F0A2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025702 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.2e-23
Identity = 55/88 (62.50%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 9  NSKLLNTLKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIESGLWGWQCR 68
          N   L  L  L+LL L+ S     TVLAKSR P+TD+ET++KK ECYADIESGLWG QC+
Sbjct: 3  NKSNLPVLNILLLLILLASSNFLPTVLAKSRNPITDSETKKKKSECYADIESGLWGEQCK 62

Query: 69 SSTTEKENCALRCLSPTCYDLVYGSDPV 97
          SS+  KENCAL+CLSP CY+L+Y SDP+
Sbjct: 63 SSSIAKENCALKCLSPACYELIYESDPL 90

[Close]

BLAST of Cucsa.256810.2 vs. TrEMBL
Match: A0A059C4C6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01772 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.2e-23
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 1


Query: 16 LKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIESGLWGWQCRSSTTEKE 75
          L+PL  L  +  LL    VLAKSR P++D E RQKK ECYAD+ESGLWGWQC+SS   KE
Sbjct: 10 LRPLRALAFLL-LLAAPAVLAKSRIPISDNEIRQKKSECYADVESGLWGWQCKSSMIAKE 69

Query: 76 NCALRCLSPTCYDLVYGSDPV 97
          NCAL+CLSPTCY++VY SDP+
Sbjct: 70 NCALKCLSPTCYEIVYESDPL 89

[Close]

BLAST of Cucsa.256810.2 vs. TAIR10
Match: AT5G17610.1 (AT5G17610.1 unknown protein)

HSP 1 Score: 110.9 bits (276), Expect = 5.2e-25
Identity = 49/76 (64.47%), Postives = 57/76 (75.00%), Query Frame = 1


Query: 21 LLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIESGLWGWQCRSSTTEKENCALR 80
          LL L+ S+     V +KS RP++D E RQKK ECY DIESGLWGWQC+SS   KENCALR
Sbjct: 13 LLLLLLSMCFVPCVFSKSPRPISDVEIRQKKSECYGDIESGLWGWQCKSSAIAKENCALR 72

Query: 81 CLSPTCYDLVYGSDPV 97
          CLSP CY L+Y SDP+
Sbjct: 73 CLSPVCYQLIYESDPL 88

[Close]

BLAST of Cucsa.256810.2 vs. NCBI nr
Match: gi|449432364|ref|XP_004133969.1| (PREDICTED: uncharacterized protein LOC101207062 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 5.4e-48
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1  MEVNNSSRNSKLLNTLKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIES 60
          MEVNNSSRNSKLLNTLKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIES
Sbjct: 1  MEVNNSSRNSKLLNTLKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIES 60

Query: 61 GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPV 97
          GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDP+
Sbjct: 61 GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPL 96

[Close]

BLAST of Cucsa.256810.2 vs. NCBI nr
Match: gi|659075702|ref|XP_008438284.1| (PREDICTED: uncharacterized protein LOC103483444 [Cucumis melo])

HSP 1 Score: 195.3 bits (495), Expect = 5.9e-47
Identity = 92/96 (95.83%), Postives = 95/96 (98.96%), Query Frame = 1


Query: 1  MEVNNSSRNSKLLNTLKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIES 60
          MEVNNSS+NSKLLNTLKPLILLG IFSLLTTHTV+AKSRRPVTDAETRQKKQECYADIES
Sbjct: 1  MEVNNSSKNSKLLNTLKPLILLGFIFSLLTTHTVIAKSRRPVTDAETRQKKQECYADIES 60

Query: 61 GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPV 97
          GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDP+
Sbjct: 61 GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPL 96

[Close]

BLAST of Cucsa.256810.2 vs. NCBI nr
Match: gi|764629331|ref|XP_011469420.1| (PREDICTED: uncharacterized protein LOC105352952 [Fragaria vesca subsp. vesca])

HSP 1 Score: 122.1 bits (305), Expect = 6.4e-25
Identity = 59/93 (63.44%), Postives = 74/93 (79.57%), Query Frame = 1


Query: 4  NNSSRNSKLLNTLKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIESGLW 63
          N+SS +S L   ++ L++L L+FS +    VLAKSRRP+TD ETRQKK +CYADIESGLW
Sbjct: 5  NSSSPSSPL--RIQILLVLSLLFSPI----VLAKSRRPITDIETRQKKAQCYADIESGLW 64

Query: 64 GWQCRSSTTEKENCALRCLSPTCYDLVYGSDPV 97
          GWQC+SS   KENC L+CLSPTCY++VY SDP+
Sbjct: 65 GWQCKSSMIAKENCVLKCLSPTCYEIVYESDPL 91

[Close]

BLAST of Cucsa.256810.2 vs. NCBI nr
Match: gi|645252399|ref|XP_008232105.1| (PREDICTED: uncharacterized protein LOC103331271 [Prunus mume])

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-24
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 1


Query: 3  VNNSSRNSKLLNTLKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIESGL 62
          VN  S +S  L    P++L  L+  LL + TVLAKSRRP++D ETRQKK +CYADIESGL
Sbjct: 2  VNQHSSSSSSLGI--PVLLFLLL--LLLSPTVLAKSRRPISDFETRQKKNQCYADIESGL 61

Query: 63 WGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPV 97
          WGWQC+SS   KENCALRCLS TCY+LVY SDP+
Sbjct: 62 WGWQCKSSLIAKENCALRCLSSTCYELVYESDPL 91

[Close]

BLAST of Cucsa.256810.2 vs. NCBI nr
Match: gi|694397148|ref|XP_009373835.1| (PREDICTED: uncharacterized protein LOC103962790 [Pyrus x bretschneideri])

HSP 1 Score: 120.2 bits (300), Expect = 2.4e-24
Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = 1


Query: 6  SSRNSKLLNTLKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIESGLWGW 65
          +++NS   + L+ LILL L+F L +     AKS RP++D ETRQKK +CYADIESGLWGW
Sbjct: 2  TNQNSSSSSPLRILILL-LVFLLFSPTNTNAKSHRPISDMETRQKKSQCYADIESGLWGW 61

Query: 66 QCRSSTTEKENCALRCLSPTCYDLVYGSDPV 97
           C+SS   KENCALRCLSPTCY+L+Y SDP+
Sbjct: 62 HCKSSLIAKENCALRCLSPTCYELIYESDPL 91

The following BLAST results are available for this feature:

BLAST of Cucsa.256810.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9A0_CUCSA	3.7e-48	98.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129480 PE=4 SV=1	[more]
M5XRP1_PRUPE	1.7e-24	62.64	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013906mg PE=4 SV=1	[more]
C5WSN4_SORBI	2.4e-23	65.79	Putative uncharacterized protein Sb01g042484 OS=Sorghum bicolor GN=Sb01g042484 P...	[more]
A0A061F0A2_THECC	4.2e-23	62.50	Uncharacterized protein OS=Theobroma cacao GN=TCM_025702 PE=4 SV=1	[more]
A0A059C4C6_EUCGR	4.2e-23	65.43	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01772 PE=4 SV=1	[more]

BLAST of Cucsa.256810.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G17610.1	5.2e-25	64.47	unknown protein	[more]

BLAST of Cucsa.256810.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432364\|ref\|XP_004133969.1\|	5.4e-48	98.96	PREDICTED: uncharacterized protein LOC101207062 [Cucumis sativus]	[more]
gi\|659075702\|ref\|XP_008438284.1\|	5.9e-47	95.83	PREDICTED: uncharacterized protein LOC103483444 [Cucumis melo]	[more]
gi\|764629331\|ref\|XP_011469420.1\|	6.4e-25	63.44	PREDICTED: uncharacterized protein LOC105352952 [Fragaria vesca subsp. vesca]	[more]
gi\|645252399\|ref\|XP_008232105.1\|	1.1e-24	64.89	PREDICTED: uncharacterized protein LOC103331271 [Prunus mume]	[more]
gi\|694397148\|ref\|XP_009373835.1\|	2.4e-24	61.54	PREDICTED: uncharacterized protein LOC103962790 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.256810	Cucsa.256810	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.256810.2	Cucsa.256810.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.256810.2.five_prime_UTR.1	Cucsa.256810.2.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.256810.2.CDS.1	Cucsa.256810.2.CDS.1	CDS
Cucsa.256810.2.CDS.2	Cucsa.256810.2.CDS.2	CDS
Cucsa.256810.2.CDS.3	Cucsa.256810.2.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.256810.2.three_prime_UTR.1	Cucsa.256810.2.three_prime_UTR.1	three_prime_UTR
Cucsa.256810.2.three_prime_UTR.2	Cucsa.256810.2.three_prime_UTR.2	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35455	FAMILY NOT NAMED	coord: 12..97 score: 7.8