Cucsa.244480.1 (mRNA) Cucumber (Gy14) v1

Overview
NameCucsa.244480.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold02135 : 354884 .. 355081 (+)
Sequence length198
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGCTCGATTCCCGAGAGAATCGAAAATTCCCAATCCCAACTACTGCAACTGCAAAACTGACACACACCCATTAATGGATTCTCCTCGTTTAGCTGCTTTACTCTCTTCTTTGATCTCCCAACTCCTTCTCCTCCTCTTCcTCCTcTTCCcTtCcTCCAACCCACATtCCCTTTTCTCCAATTCCGCCCCAGATTCCA

mRNA sequence

CCGCTCGATTCCCGAGAGAATCGAAAATTCCCAATCCCAACTACTGCAACTGCAAAACTGACACACACCCATTAATGGATTCTCCTCGTTTAGCTGCTTTACTCTCTTCTTTGATCTCCCAActccttctcctcctcttcctcctcttcccttcctccAACCCACATTCCCTTTTCTCCAATTCCGCCCCAGATTCCA

Coding sequence (CDS)

CCGCTCGATTCCCGAGAGAATCGAAAATTCCCAATCCCAACTACTGCAACTGCAAAACTGACACACACCCATTAATGGATTCTCCTCGTTTAGCTGCTTTACTCTCTTCTTTGATCTCCCAACTCCTTCTCCTCCTCTTCcTCCTcTTCCcTtCcTCCAACCCACATtCCCTTTTCTCCAATTCCGCCCCAGATTCCA

Protein sequence

ARFPRESKIPNPNYCNCKTDTHPLMDSPRLAALLSSLISQLLLLLFLLFPSSNPHSLFSNSAPDSX
Homology
[Close]
BLAST of Cucsa.244480.1 vs. TrEMBL
Match: A0A0A0LBX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202740 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.5e-13
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 

Query: 25 MDSPRLAALLSSLISQLLLLLFLLFPSSNPHSLFSNSAPDS 66
          MDSPRLAALLSSLISQLLLLLFLLFPSSNPHSLFSNSAPDS
Sbjct: 1  MDSPRLAALLSSLISQLLLLLFLLFPSSNPHSLFSNSAPDS 41

[Close]
BLAST of Cucsa.244480.1 vs. NCBI nr
Match: gi|778688571|ref|XP_011652780.1| (PREDICTED: uncharacterized protein LOC101203312 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-12
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 

Query: 25 MDSPRLAALLSSLISQLLLLLFLLFPSSNPHSLFSNSAPDS 66
          MDSPRLAALLSSLISQLLLLLFLLFPSSNPHSLFSNSAPDS
Sbjct: 1  MDSPRLAALLSSLISQLLLLLFLLFPSSNPHSLFSNSAPDS 41

The following BLAST results are available for this feature:
BLAST of Cucsa.244480.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBX6_CUCSA8.5e-13100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202740 PE=4 SV=1[more]
BLAST of Cucsa.244480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778688571|ref|XP_011652780.1|1.2e-12100.00PREDICTED: uncharacterized protein LOC101203312 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsa.244480Cucsa.244480gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsa.244480.1Cucsa.244480.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.244480.1.CDS.1Cucsa.244480.1.CDS.1CDS