Cucsa.244480 (gene) Cucumber (Gy14) v1

NameCucsa.244480
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold02135 : 354884 .. 355081 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGCTCGATTCCCGAGAGAATCGAAAATTCCCAATCCCAACTACTGCAACTGCAAAACTGACACACACCCATTAATGGATTCTCCTCGTTTAGCTGCTTTACTCTCTTCTTTGATCTCCCAACTCCTTCTCCTCCTCTTCcTCCTcTTCCcTtCcTCCAACCCACATtCCCTTTTCTCCAATTCCGCCCCAGATTCCA

mRNA sequence

CCGCTCGATTCCCGAGAGAATCGAAAATTCCCAATCCCAACTACTGCAACTGCAAAACTGACACACACCCATTAATGGATTCTCCTCGTTTAGCTGCTTTACTCTCTTCTTTGATCTCCCAActccttctcctcctcttcctcctcttcccttcctccAACCCACATTCCCTTTTCTCCAATTCCGCCCCAGATTCCA

Coding sequence (CDS)

CCGCTCGATTCCCGAGAGAATCGAAAATTCCCAATCCCAACTACTGCAACTGCAAAACTGACACACACCCATTAATGGATTCTCCTCGTTTAGCTGCTTTACTCTCTTCTTTGATCTCCCAACTCCTTCTCCTCCTCTTCcTCCTcTTCCcTtCcTCCAACCCACATtCCCTTTTCTCCAATTCCGCCCCAGATTCCA

Protein sequence

ARFPRESKIPNPNYCNCKTDTHPLMDSPRLAALLSSLISQLLLLLFLLFPSSNPHSLFSNSAPDSX
BLAST of Cucsa.244480 vs. TrEMBL
Match: A0A0A0LBX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202740 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.5e-13
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1

Query: 25 MDSPRLAALLSSLISQLLLLLFLLFPSSNPHSLFSNSAPDS 66
          MDSPRLAALLSSLISQLLLLLFLLFPSSNPHSLFSNSAPDS
Sbjct: 1  MDSPRLAALLSSLISQLLLLLFLLFPSSNPHSLFSNSAPDS 41

BLAST of Cucsa.244480 vs. NCBI nr
Match: gi|778688571|ref|XP_011652780.1| (PREDICTED: uncharacterized protein LOC101203312 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-12
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1

Query: 25 MDSPRLAALLSSLISQLLLLLFLLFPSSNPHSLFSNSAPDS 66
          MDSPRLAALLSSLISQLLLLLFLLFPSSNPHSLFSNSAPDS
Sbjct: 1  MDSPRLAALLSSLISQLLLLLFLLFPSSNPHSLFSNSAPDS 41

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LBX6_CUCSA8.5e-13100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202740 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778688571|ref|XP_011652780.1|1.2e-12100.00PREDICTED: uncharacterized protein LOC101203312 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.244480.1Cucsa.244480.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.244480Cucumber (Gy14) v1cgycgyB117
Cucsa.244480Cucurbita maxima (Rimu)cgycmaB0684
Cucsa.244480Cucurbita maxima (Rimu)cgycmaB0685
Cucsa.244480Cucurbita maxima (Rimu)cgycmaB0686
Cucsa.244480Cucurbita maxima (Rimu)cgycmaB0687
Cucsa.244480Cucurbita moschata (Rifu)cgycmoB0684
Cucsa.244480Cucurbita moschata (Rifu)cgycmoB0685
Cucsa.244480Cucurbita moschata (Rifu)cgycmoB0686
Cucsa.244480Cucurbita moschata (Rifu)cgycmoB0687
Cucsa.244480Wild cucumber (PI 183967)cgycpiB366
Cucsa.244480Wild cucumber (PI 183967)cgycpiB367
Cucsa.244480Cucumber (Chinese Long) v2cgycuB350
Cucsa.244480Cucumber (Chinese Long) v2cgycuB351
Cucsa.244480Melon (DHL92) v3.5.1cgymeB416
Cucsa.244480Melon (DHL92) v3.5.1cgymeB417
Cucsa.244480Watermelon (Charleston Gray)cgywcgB432
Cucsa.244480Watermelon (Charleston Gray)cgywcgB433
Cucsa.244480Watermelon (97103) v1cgywmB462
Cucsa.244480Watermelon (97103) v1cgywmB463
Cucsa.244480Cucurbita pepo (Zucchini)cgycpeB0652
Cucsa.244480Cucurbita pepo (Zucchini)cgycpeB0653
Cucsa.244480Cucurbita pepo (Zucchini)cgycpeB0654
Cucsa.244480Bottle gourd (USVL1VR-Ls)cgylsiB403
Cucsa.244480Bottle gourd (USVL1VR-Ls)cgylsiB404
Cucsa.244480Melon (DHL92) v3.6.1cgymedB411
Cucsa.244480Melon (DHL92) v3.6.1cgymedB412
Cucsa.244480Silver-seed gourdcarcgyB0253
Cucsa.244480Silver-seed gourdcarcgyB0436
Cucsa.244480Cucumber (Chinese Long) v3cgycucB369
Cucsa.244480Cucumber (Chinese Long) v3cgycucB370
Cucsa.244480Watermelon (97103) v2cgywmbB434
Cucsa.244480Watermelon (97103) v2cgywmbB435
Cucsa.244480Wax gourdcgywgoB493
Cucsa.244480Wax gourdcgywgoB494