Cucsa.241710.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.241710.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Harpin inducing protein 1-like protein
Location	scaffold02047 : 1639377 .. 1639959 (-)
Sequence length	583

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTGGTGGGGGCCGATTCATCACCTTTCTCAAGATCCTCATCGCCATAATCATCGTCGTTGGTCTCGCCGTATTGATCTTATGGCTCATATTCCGTCCCAACAAAGTCAAATTCAACGTCACCGACGCTAAACTCACCCAATTCAACCTCATCGGCAACCAGCTCCATTACAACTTGGCCCTCAACGTCACAGTGAGAAACCCCAACAAGCGAATCGGGGTGTACTACGATAGCATAGAATCCTCCCCCATTTACAAAGACCAGCGCCTAGAGACCCAGTGGCTGCCGCCATTTTACCAAGGCTACAAAACCACGGCCGTCATCAGCTGCGTTTTCTCCGGGCAGCAGCTCCTCCTTCTCGCCGGCCAGGGGCTGACAGAGTTCAACGCGGAGACAGTTGCGGGCGTGTACGAGATGAACGTGGAGCTTAATCTTCGGATCAGGTTGAAGTTTGGTGCCGTTAGGATAGGGAAGTTTAAGCCTAAGGTGAATTGTGAGTTTAAAGTTCCGTTGAGTTCCGATGGAAACTCAGTTGTTGGTTCGGTGTTTGAGTCTACCGGCTGTGATATTGATTATTGGTGA

mRNA sequence

CTGTGGTGGGGGCCGATTCATCACCTTTCTCAAGATCCTCATCGCCATAATCATCGTCGTTGGTCTCGCCGTATTGATCTTATGGCTCATATTCCGTCCCAACAAAGTCAAATTCAACGTCACCGACGCTAAACTCACCCAATTCAACCTCATCGGCAACCAGCTCCATTACAACTTGGCCCTCAACGTCACAGTGAGAAACCCCAACAAGCGAATCGGGGTGTACTACGATAGCATAGAATCCTCCCCCATTTACAAAGACCAGCGCCTAGAGACCCAGTGGCTGCCGCCATTTTACCAAGGCTACAAAACCACGGCCGTCATCAGCTGCGTTTTCTCCGGGCAGCAGCTCCTCCTTCTCGCCGGCCAGGGGCTGACAGAGTTCAACGCGGAGACAGTTGCGGGCGTGTACGAGATGAACGTGGAGCTTAATCTTCGGATCAGGTTGAAGTTTGGTGCCGTTAGGATAGGGAAGTTTAAGCCTAAGGTGAATTGTGAGTTTAAAGTTCCGTTGAGTTCCGATGGAAACTCAGTTGTTGGTTCGGTGTTTGAGTCTACCGGCTGTGATATTGATTATTGGTGA

Coding sequence (CDS)

CTGTGGTGGGGGCCGATTCATCACCTTTCTCAAGATCCTCATCGCCATAATCATCGTCGTTGGTCTCGCCGTATTGATCTTATGGCTCATATTCCGTCCCAACAAAGTCAAATTCAACGTCACCGACGCTAAACTCACCCAATTCAACCTCATCGGCAACCAGCTCCATTACAACTTGGCCCTCAACGTCACAGTGAGAAACCCCAACAAGCGAATCGGGGTGTACTACGATAGCATAGAATCCTCCCCCATTTACAAAGACCAGCGCCTAGAGACCCAGTGGCTGCCGCCATTTTACCAAGGCTACAAAACCACGGCCGTCATCAGCTGCGTTTTCTCCGGGCAGCAGCTCCTCCTTCTCGCCGGCCAGGGGCTGACAGAGTTCAACGCGGAGACAGTTGCGGGCGTGTACGAGATGAACGTGGAGCTTAATCTTCGGATCAGGTTGAAGTTTGGTGCCGTTAGGATAGGGAAGTTTAAGCCTAAGGTGAATTGTGAGTTTAAAGTTCCGTTGAGTTCCGATGGAAACTCAGTTGTTGGTTCGGTGTTTGAGTCTACCGGCTGTGATATTGATTATTGGTGA

Protein sequence

CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLALNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVGSVFESTGCDIDYW*

Homology

[Close]

BLAST of Cucsa.241710.1 vs. Swiss-Prot
Match: NHL3_ARATH (NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-45
Identity = 95/194 (48.97%), Postives = 127/194 (65.46%), Query Frame = 1


Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIG-NQLHYNL 60
           CG         ILI I +++G+A LI+WLIFRPN +KF+VTDAKLT+F L   N L YNL
Sbjct: 40  CGCCILSVIFNILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNL 99

Query: 61  ALNVTVRNPNKRIGVYYDSIESSPIYKDQRLE-TQWLPPFYQGYKTTAVISCVFSGQQLL 120
            LN T+RNPN+RIGVYYD IE    Y DQR   +  +  FYQG+K T V+     GQQL+
Sbjct: 100 DLNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLV 159

Query: 121 LLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSV 180
           LL G    + N +  + +Y ++ +L L+IR KFG ++  +FKPK+ C+ KVPL+S  NS 
Sbjct: 160 LLDGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTS--NST 219

Query: 181 VGSVFESTGCDIDY 193
            G VF+ T CD+D+
Sbjct: 220 SGFVFQPTKCDVDF 231

[Close]

BLAST of Cucsa.241710.1 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.5e-42
Identity = 89/196 (45.41%), Postives = 127/196 (64.80%), Query Frame = 1


Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIG--NQLHYN 60
           CG      F+K++I++I+++G+A LI WLI RP  +KF+VTDA LT+F+     N L YN
Sbjct: 33  CGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYN 92

Query: 61  LALNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLL 120
           LAL V VRNPNKRIG+YYD IE+   Y+ +R  T  L PFYQG+K T V++  F GQ L+
Sbjct: 93  LALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLV 152

Query: 121 LL-AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNC-EFKVPLSSDGN 180
           +  AGQ  T  NAE ++GVY + ++  LR+R K G ++  + KPKV+C + ++PLS+   
Sbjct: 153 IFNAGQSRT-LNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDCDDLRLPLSTSNG 212

Query: 181 SVVGSVFESTGCDIDY 193
           +   S      CD D+
Sbjct: 213 TTTTSTVFPIKCDFDF 227

[Close]

BLAST of Cucsa.241710.1 vs. Swiss-Prot
Match: SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-22
Identity = 57/150 (38.00%), Postives = 87/150 (58.00%), Query Frame = 1


Query: 32  RPNKVKFNVTDAKLTQFNL-IGNQLHYNLALNVTVRNPNKRIGVYYDSIESSPIYKDQRL 91
           R N VKF V DA+LT F+L   N L Y+L+LN+++RN    IG++YD  E++  Y +QRL
Sbjct: 3   RSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 62

Query: 92  ETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLK 151
               +P FY G K T ++  +F GQ L+LL G    +F  +   GVY ++V+L++  R+ 
Sbjct: 63  GAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVM 122

Query: 152 FGAVRIGKFKPKVNCEFKVPLSSDGNSVVG 181
              +     KP V C  K+PL+   ++  G
Sbjct: 123 VLHLVTWPMKPVVRCHLKIPLALGSSNSTG 152

[Close]

BLAST of Cucsa.241710.1 vs. Swiss-Prot
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-15
Identity = 53/179 (29.61%), Postives = 87/179 (48.60%), Query Frame = 1


Query: 2   GGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLI-GNQLHYNLA 61
           GGG       ++I  II+V + + ++W+I +P K +F + DA +  FNL   N L  N  
Sbjct: 14  GGGTASRICGVIIGFIIIVLITIFLVWIILQPTKPRFILQDATVYAFNLSQPNLLTSNFQ 73

Query: 62  LNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQW-LPPFYQGYKTTAVISCVFSGQQLLL 121
           + +  RN N RIG+YYD +     Y++Q++  +  +PP YQG+K   V S    G   + 
Sbjct: 74  ITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNS-VP 133

Query: 122 LAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSV 179
           +A         E   G   + +  + R+R K G +  GK+   V C+  + L+     V
Sbjct: 134 IAPFNAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFINLADKAAGV 191

[Close]

BLAST of Cucsa.241710.1 vs. Swiss-Prot
Match: Y1816_ARATH (Uncharacterized protein At1g08160 OS=Arabidopsis thaliana GN=At1g08160 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-07
Identity = 41/155 (26.45%), Postives = 69/155 (44.52%), Query Frame = 1


Query: 13  LIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLALNVTVR--NPNK 72
           L+ + ++VGLA+LI +L  RP ++ + V  A + +F +  N  H N   +  ++  NP K
Sbjct: 44  LVLLGLLVGLAILITYLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPEK 103

Query: 73  RIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTEFNA 132
            + V Y S+  S  + +Q +  + + PF Q  K    I         + L+     +  A
Sbjct: 104 HVSVRYHSMRISTAHHNQSVAHKNISPFKQRPKNETRIETQLVSHN-VALSKFNARDLRA 163

Query: 133 ETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNC 166
           E   G  EM V +  R+  K    R  +   K  C
Sbjct: 164 EKSKGTIEMEVYITARVSYKTWIFRSRRRTLKAVC 197

[Close]

BLAST of Cucsa.241710.1 vs. TrEMBL
Match: A0A0A0LE50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778990 PE=4 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 8.7e-106
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1


Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLA 60
           CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLA
Sbjct: 21  CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLA 80

Query: 61  LNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLL 120
           LNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLL
Sbjct: 81  LNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLL 140

Query: 121 AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVG 180
           AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVG
Sbjct: 141 AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVG 200

Query: 181 SVFESTGCDIDYW 194
           SVFESTGCDIDYW
Sbjct: 201 SVFESTGCDIDYW 213

[Close]

BLAST of Cucsa.241710.1 vs. TrEMBL
Match: A0A0A0LGS5_CUCSA (Hairpin-inducing protein OS=Cucumis sativus GN=Csa_3G779010 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.1e-68
Identity = 126/185 (68.11%), Postives = 158/185 (85.41%), Query Frame = 1


Query: 8   TFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLALNVTVRN 67
           TFLK LIAI++V+G+AVL+ WL+FRPNK+KF+VT A+LT+FN+ GNQLHY+LALN+TVRN
Sbjct: 40  TFLKFLIAIVVVLGVAVLVFWLVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRN 99

Query: 68  PNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTE 127
           PNKRIGVYYD IE+SP YKDQRL TQWL PFYQG+KTT+V+S  F GQQ+++ AG  LTE
Sbjct: 100 PNKRIGVYYDVIEASPYYKDQRLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTE 159

Query: 128 FNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVGSVFESTG 187
           FN ET+AGV+E++V++ LR+RLK GAVRIGKF+PKVNCE KVPL S+ NS     F++T 
Sbjct: 160 FNGETLAGVFEVDVKIRLRLRLKVGAVRIGKFRPKVNCELKVPLKSNPNSF---TFQTTR 219

Query: 188 CDIDY 193
           CD D+
Sbjct: 220 CDFDF 221

[Close]

BLAST of Cucsa.241710.1 vs. TrEMBL
Match: A0A0A0LBJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G779020 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-67
Identity = 122/185 (65.95%), Postives = 154/185 (83.24%), Query Frame = 1


Query: 8   TFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLALNVTVRN 67
           TFLK+L+ I++VVG+AVLILW +FRP+K+ F+VTDA+LT+FN+ GNQLHYNLALN+T+RN
Sbjct: 40  TFLKLLVTIVVVVGIAVLILWFLFRPHKLTFDVTDAELTRFNISGNQLHYNLALNLTIRN 99

Query: 68  PNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTE 127
           PNKRIGVYYD IE+SP YKDQRL TQWLPPFYQG+KTT V+S  F GQQ++ LAG  LTE
Sbjct: 100 PNKRIGVYYDVIEASPFYKDQRLNTQWLPPFYQGHKTTTVLSPHFDGQQIVFLAGDKLTE 159

Query: 128 FNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVGSVFESTG 187
           FN ET+AG++ +++   L++RLK G VRIGKFKPKVNCE KVPL S+ NS   +  ++T 
Sbjct: 160 FNGETLAGIFNVDLRFRLQLRLKVGVVRIGKFKPKVNCELKVPLKSNANSF--TFLQATR 219

Query: 188 CDIDY 193
           CD D+
Sbjct: 220 CDFDF 222

[Close]

BLAST of Cucsa.241710.1 vs. TrEMBL
Match: B9T2S1_RICCO (Syntaxin, plant, putative OS=Ricinus communis GN=RCOM_0437400 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.1e-55
Identity = 108/192 (56.25%), Postives = 141/192 (73.44%), Query Frame = 1


Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLA 60
           CG       LKI+I I +V+GLAVLI WL+ RPNKVKF+VT+A L++FN+  N LHYNLA
Sbjct: 33  CGCCLLSCLLKIIITIAVVLGLAVLIFWLVVRPNKVKFHVTEANLSEFNINNNTLHYNLA 92

Query: 61  LNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLL 120
           LN+TVRNPNK+IG+YYD IE+   Y+DQR  +Q+L PFYQG+K T++++  F GQQL+LL
Sbjct: 93  LNITVRNPNKKIGIYYDRIEARGKYEDQRFGSQFLTPFYQGHKNTSILTPAFQGQQLMLL 152

Query: 121 AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVG 180
           +G  LT+FN E V+GVY ++V L L+IR K G ++IGKFKPK+ CE KVP +S       
Sbjct: 153 SGDELTDFNEERVSGVYSIDVTLYLKIRFKIGDLKIGKFKPKIQCELKVPSNSS-----A 212

Query: 181 SVFESTGCDIDY 193
             F+ T CD DY
Sbjct: 213 VPFQRTECDWDY 219

[Close]

BLAST of Cucsa.241710.1 vs. TrEMBL
Match: A0A0D2MF43_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G235900 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.6e-54
Identity = 104/193 (53.89%), Postives = 141/193 (73.06%), Query Frame = 1


Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQ-LHYNL 60
           CG         I+I  I+++GLAV I WLIFRPNKVKF+VTD +LTQFNL  N  LHYNL
Sbjct: 35  CGCCLLKCLFNIIITAIVIIGLAVFIFWLIFRPNKVKFHVTDVQLTQFNLTSNNTLHYNL 94

Query: 61  ALNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLL 120
           ALN+T+RNPN+RIG+YYD IE+   Y+DQR +T+ L PFYQG+K T+ ++ VF GQQ + 
Sbjct: 95  ALNMTIRNPNRRIGIYYDRIEARAYYEDQRFDTETLTPFYQGHKNTSYLNPVFVGQQFVR 154

Query: 121 LAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVV 180
           L     +EFN + V GVY+++V+L LRIR K G V+ G+FKP+++C+ KVPL++ GN   
Sbjct: 155 LGADETSEFNEDRVNGVYDIDVKLYLRIRFKLGRVKTGRFKPRISCDLKVPLNT-GNGSF 214

Query: 181 GSVFESTGCDIDY 193
           G  F++T CD+D+
Sbjct: 215 GGTFKTTRCDLDF 226

[Close]

BLAST of Cucsa.241710.1 vs. TAIR10
Match: AT5G06320.1 (AT5G06320.1 NDR1/HIN1-like 3)

HSP 1 Score: 184.5 bits (467), Expect = 6.2e-47
Identity = 95/194 (48.97%), Postives = 127/194 (65.46%), Query Frame = 1


Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIG-NQLHYNL 60
           CG         ILI I +++G+A LI+WLIFRPN +KF+VTDAKLT+F L   N L YNL
Sbjct: 40  CGCCILSVIFNILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNL 99

Query: 61  ALNVTVRNPNKRIGVYYDSIESSPIYKDQRLE-TQWLPPFYQGYKTTAVISCVFSGQQLL 120
            LN T+RNPN+RIGVYYD IE    Y DQR   +  +  FYQG+K T V+     GQQL+
Sbjct: 100 DLNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLV 159

Query: 121 LLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSV 180
           LL G    + N +  + +Y ++ +L L+IR KFG ++  +FKPK+ C+ KVPL+S  NS 
Sbjct: 160 LLDGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTS--NST 219

Query: 181 VGSVFESTGCDIDY 193
            G VF+ T CD+D+
Sbjct: 220 SGFVFQPTKCDVDF 231

[Close]

BLAST of Cucsa.241710.1 vs. TAIR10
Match: AT2G35980.1 (AT2G35980.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 174.1 bits (440), Expect = 8.4e-44
Identity = 89/196 (45.41%), Postives = 127/196 (64.80%), Query Frame = 1


Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIG--NQLHYN 60
           CG      F+K++I++I+++G+A LI WLI RP  +KF+VTDA LT+F+     N L YN
Sbjct: 33  CGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYN 92

Query: 61  LALNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLL 120
           LAL V VRNPNKRIG+YYD IE+   Y+ +R  T  L PFYQG+K T V++  F GQ L+
Sbjct: 93  LALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLV 152

Query: 121 LL-AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNC-EFKVPLSSDGN 180
           +  AGQ  T  NAE ++GVY + ++  LR+R K G ++  + KPKV+C + ++PLS+   
Sbjct: 153 IFNAGQSRT-LNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDCDDLRLPLSTSNG 212

Query: 181 SVVGSVFESTGCDIDY 193
           +   S      CD D+
Sbjct: 213 TTTTSTVFPIKCDFDF 227

[Close]

BLAST of Cucsa.241710.1 vs. TAIR10
Match: AT3G11650.1 (AT3G11650.1 NDR1/HIN1-like 2)

HSP 1 Score: 164.1 bits (414), Expect = 8.7e-41
Identity = 86/193 (44.56%), Postives = 115/193 (59.59%), Query Frame = 1


Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLI-GNQLHYNL 60
           CG         ILIA+ +++G+A LILWLIFRPN VKF V DA L +F+    N LHY+L
Sbjct: 47  CGCCILSLICNILIAVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNNLHYSL 106

Query: 61  ALNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLL 120
            LN T+RNPN+R+GVYYD    S  Y DQR  +  +  FYQG+K T VI     GQ L++
Sbjct: 107 DLNFTIRNPNQRVGVYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTVILTKIEGQNLVV 166

Query: 121 LAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNC-EFKVPLSSDGNSV 180
           L     T+   +  +G+Y +N +L L +R KF  ++  K KPK+ C + K+PL S  NS 
Sbjct: 167 LGDGARTDLKDDEKSGIYRINAKLRLSVRFKFWFIKSWKLKPKIKCDDLKIPLGS-SNST 226

Query: 181 VGSVFESTGCDID 192
            G  F+   CD D
Sbjct: 227 GGFKFQPVQCDFD 238

[Close]

BLAST of Cucsa.241710.1 vs. TAIR10
Match: AT2G35460.1 (AT2G35460.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 159.5 bits (402), Expect = 2.1e-39
Identity = 79/193 (40.93%), Postives = 116/193 (60.10%), Query Frame = 1


Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLI--GNQLHYN 60
           CGG        ILI +++ +G+  LILW I RPN VKF VT+A LT+F      + LHYN
Sbjct: 46  CGGCLVNIICNILIGVLVCLGVVALILWFILRPNVVKFQVTEADLTRFEFDPRSHNLHYN 105

Query: 61  LALNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLL 120
           ++LN ++RNPN+R+G++YD +E    Y DQR     +  FYQG+K T V+    +GQ+L+
Sbjct: 106 ISLNFSIRNPNQRLGIHYDQLEVRGYYGDQRFSAANMTSFYQGHKNTTVVGTELNGQKLV 165

Query: 121 LLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSV 180
           LL   G  +F  +  +GVY ++V+L  ++R KFG +     +PK+ C  KVPLS+  +S 
Sbjct: 166 LLGAGGRRDFREDRRSGVYRIDVKLRFKLRFKFGFLNSWAVRPKIKCHLKVPLST-SSSD 225

Query: 181 VGSVFESTGCDID 192
               F  T C +D
Sbjct: 226 ERFQFHPTKCHVD 237

[Close]

BLAST of Cucsa.241710.1 vs. TAIR10
Match: AT1G32270.1 (AT1G32270.1 syntaxin, putative)

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-24
Identity = 57/150 (38.00%), Postives = 87/150 (58.00%), Query Frame = 1


Query: 32  RPNKVKFNVTDAKLTQFNL-IGNQLHYNLALNVTVRNPNKRIGVYYDSIESSPIYKDQRL 91
           R N VKF V DA+LT F+L   N L Y+L+LN+++RN    IG++YD  E++  Y +QRL
Sbjct: 3   RSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 62

Query: 92  ETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLK 151
               +P FY G K T ++  +F GQ L+LL G    +F  +   GVY ++V+L++  R+ 
Sbjct: 63  GAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVM 122

Query: 152 FGAVRIGKFKPKVNCEFKVPLSSDGNSVVG 181
              +     KP V C  K+PL+   ++  G
Sbjct: 123 VLHLVTWPMKPVVRCHLKIPLALGSSNSTG 152

[Close]

BLAST of Cucsa.241710.1 vs. NCBI nr
Match: gi|778684445|ref|XP_011652030.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 391.0 bits (1003), Expect = 1.2e-105
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1


Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLA 60
           CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLA
Sbjct: 21  CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLA 80

Query: 61  LNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLL 120
           LNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLL
Sbjct: 81  LNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLL 140

Query: 121 AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVG 180
           AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVG
Sbjct: 141 AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVG 200

Query: 181 SVFESTGCDIDYW 194
           SVFESTGCDIDYW
Sbjct: 201 SVFESTGCDIDYW 213

[Close]

BLAST of Cucsa.241710.1 vs. NCBI nr
Match: gi|659084476|ref|XP_008442907.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 372.1 bits (954), Expect = 6.0e-100
Identity = 182/193 (94.30%), Postives = 189/193 (97.93%), Query Frame = 1


Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLA 60
           CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLI NQLH+N A
Sbjct: 21  CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIDNQLHFNFA 80

Query: 61  LNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLL 120
           LNVTVRNPNKRIGVYYD+IESS IYK+QRL+TQWLPPFYQGYKTTAVISCVFSGQQLLLL
Sbjct: 81  LNVTVRNPNKRIGVYYDTIESSAIYKNQRLQTQWLPPFYQGYKTTAVISCVFSGQQLLLL 140

Query: 121 AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVG 180
           AGQGLTEFNAE VAGVYEMN+ELNLRIRLKFGAVR+GKFKPKVNCEFKVPLSSDG+SVVG
Sbjct: 141 AGQGLTEFNAERVAGVYEMNMELNLRIRLKFGAVRVGKFKPKVNCEFKVPLSSDGSSVVG 200

Query: 181 SVFESTGCDIDYW 194
           SVFESTGCDIDYW
Sbjct: 201 SVFESTGCDIDYW 213

[Close]

BLAST of Cucsa.241710.1 vs. NCBI nr
Match: gi|449437456|ref|XP_004136508.1| (PREDICTED: protein YLS9 [Cucumis sativus])

HSP 1 Score: 267.7 bits (683), Expect = 1.6e-68
Identity = 126/185 (68.11%), Postives = 158/185 (85.41%), Query Frame = 1


Query: 8   TFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLALNVTVRN 67
           TFLK LIAI++V+G+AVL+ WL+FRPNK+KF+VT A+LT+FN+ GNQLHY+LALN+TVRN
Sbjct: 40  TFLKFLIAIVVVLGVAVLVFWLVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRN 99

Query: 68  PNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTE 127
           PNKRIGVYYD IE+SP YKDQRL TQWL PFYQG+KTT+V+S  F GQQ+++ AG  LTE
Sbjct: 100 PNKRIGVYYDVIEASPYYKDQRLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTE 159

Query: 128 FNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVGSVFESTG 187
           FN ET+AGV+E++V++ LR+RLK GAVRIGKF+PKVNCE KVPL S+ NS     F++T 
Sbjct: 160 FNGETLAGVFEVDVKIRLRLRLKVGAVRIGKFRPKVNCELKVPLKSNPNSF---TFQTTR 219

Query: 188 CDIDY 193
           CD D+
Sbjct: 220 CDFDF 221

[Close]

BLAST of Cucsa.241710.1 vs. NCBI nr
Match: gi|659084478|ref|XP_008442908.1| (PREDICTED: protein YLS9 [Cucumis melo])

HSP 1 Score: 266.9 bits (681), Expect = 2.7e-68
Identity = 126/185 (68.11%), Postives = 154/185 (83.24%), Query Frame = 1


Query: 8   TFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLALNVTVRN 67
           TFLK  IAI++V+G+ VL+LWL+FRPNK+KF+VT A+LT+FN+ GNQLHYNLALN+TVRN
Sbjct: 40  TFLKFFIAIVVVLGVTVLVLWLVFRPNKLKFHVTGAELTRFNVSGNQLHYNLALNLTVRN 99

Query: 68  PNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTE 127
           PNKRIGVYYD IE+SP YKDQRL TQWL PFYQG+KTT V+S  F GQQ++  AG  LTE
Sbjct: 100 PNKRIGVYYDVIEASPYYKDQRLNTQWLTPFYQGHKTTTVLSPHFDGQQIVFFAGDKLTE 159

Query: 128 FNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVGSVFESTG 187
           FN ET+AG++E++V+  LR+RLK GAVRIGKFKPKVNCE KVPL S+ NS     F++T 
Sbjct: 160 FNGETLAGIFEVDVKFRLRLRLKVGAVRIGKFKPKVNCELKVPLKSNPNSFTS--FQTTR 219

Query: 188 CDIDY 193
           CD D+
Sbjct: 220 CDFDF 222

[Close]

BLAST of Cucsa.241710.1 vs. NCBI nr
Match: gi|778684454|ref|XP_011652031.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 1.8e-67
Identity = 122/185 (65.95%), Postives = 154/185 (83.24%), Query Frame = 1


Query: 8   TFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLALNVTVRN 67
           TFLK+L+ I++VVG+AVLILW +FRP+K+ F+VTDA+LT+FN+ GNQLHYNLALN+T+RN
Sbjct: 40  TFLKLLVTIVVVVGIAVLILWFLFRPHKLTFDVTDAELTRFNISGNQLHYNLALNLTIRN 99

Query: 68  PNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTE 127
           PNKRIGVYYD IE+SP YKDQRL TQWLPPFYQG+KTT V+S  F GQQ++ LAG  LTE
Sbjct: 100 PNKRIGVYYDVIEASPFYKDQRLNTQWLPPFYQGHKTTTVLSPHFDGQQIVFLAGDKLTE 159

Query: 128 FNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVGSVFESTG 187
           FN ET+AG++ +++   L++RLK G VRIGKFKPKVNCE KVPL S+ NS   +  ++T 
Sbjct: 160 FNGETLAGIFNVDLRFRLQLRLKVGVVRIGKFKPKVNCELKVPLKSNANSF--TFLQATR 219

Query: 188 CDIDY 193
           CD D+
Sbjct: 220 CDFDF 222

The following BLAST results are available for this feature:

BLAST of Cucsa.241710.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NHL3_ARATH	1.1e-45	48.97	NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1	[more]
YLS9_ARATH	1.5e-42	45.41	Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1	[more]
SYP24_ARATH	1.0e-22	38.00	Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1	[more]
NHL12_ARATH	1.6e-15	29.61	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1	[more]
Y1816_ARATH	1.2e-07	26.45	Uncharacterized protein At1g08160 OS=Arabidopsis thaliana GN=At1g08160 PE=2 SV=1	[more]

BLAST of Cucsa.241710.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE50_CUCSA	8.7e-106	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778990 PE=4 SV=1	[more]
A0A0A0LGS5_CUCSA	1.1e-68	68.11	Hairpin-inducing protein OS=Cucumis sativus GN=Csa_3G779010 PE=4 SV=1	[more]
A0A0A0LBJ4_CUCSA	1.2e-67	65.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G779020 PE=4 SV=1	[more]
B9T2S1_RICCO	3.1e-55	56.25	Syntaxin, plant, putative OS=Ricinus communis GN=RCOM_0437400 PE=4 SV=1	[more]
A0A0D2MF43_GOSRA	2.6e-54	53.89	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G235900 PE=4 SV=1	[more]

BLAST of Cucsa.241710.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06320.1	6.2e-47	48.97	NDR1/HIN1-like 3	[more]
AT2G35980.1	8.4e-44	45.41	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT3G11650.1	8.7e-41	44.56	NDR1/HIN1-like 2	[more]
AT2G35460.1	2.1e-39	40.93	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT1G32270.1	5.7e-24	38.00	syntaxin, putative	[more]

BLAST of Cucsa.241710.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778684445\|ref\|XP_011652030.1\|	1.2e-105	100.00	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]
gi\|659084476\|ref\|XP_008442907.1\|	6.0e-100	94.30	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|449437456\|ref\|XP_004136508.1\|	1.6e-68	68.11	PREDICTED: protein YLS9 [Cucumis sativus]	[more]
gi\|659084478\|ref\|XP_008442908.1\|	2.7e-68	68.11	PREDICTED: protein YLS9 [Cucumis melo]	[more]
gi\|778684454\|ref\|XP_011652031.1\|	1.8e-67	65.95	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.241710	Cucsa.241710	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.241710.1	Cucsa.241710.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.241710.1.CDS.1	Cucsa.241710.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 62..165 score: 3.8
None	No IPR available	PANTHER	PTHR31415	FAMILY NOT NAMED	coord: 6..192 score: 1.2
None	No IPR available	PANTHER	PTHR31415:SF4	HARPIN-INDUCED PROTEIN-LIKE-RELATED	coord: 6..192 score: 1.2