Cucsa.241710 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.241710
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionHarpin inducing protein 1-like protein
Locationscaffold02047 : 1639377 .. 1639959 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGTGGTGGGGGCCGATTCATCACCTTTCTCAAGATCCTCATCGCCATAATCATCGTCGTTGGTCTCGCCGTATTGATCTTATGGCTCATATTCCGTCCCAACAAAGTCAAATTCAACGTCACCGACGCTAAACTCACCCAATTCAACCTCATCGGCAACCAGCTCCATTACAACTTGGCCCTCAACGTCACAGTGAGAAACCCCAACAAGCGAATCGGGGTGTACTACGATAGCATAGAATCCTCCCCCATTTACAAAGACCAGCGCCTAGAGACCCAGTGGCTGCCGCCATTTTACCAAGGCTACAAAACCACGGCCGTCATCAGCTGCGTTTTCTCCGGGCAGCAGCTCCTCCTTCTCGCCGGCCAGGGGCTGACAGAGTTCAACGCGGAGACAGTTGCGGGCGTGTACGAGATGAACGTGGAGCTTAATCTTCGGATCAGGTTGAAGTTTGGTGCCGTTAGGATAGGGAAGTTTAAGCCTAAGGTGAATTGTGAGTTTAAAGTTCCGTTGAGTTCCGATGGAAACTCAGTTGTTGGTTCGGTGTTTGAGTCTACCGGCTGTGATATTGATTATTGGTGA

mRNA sequence

CTGTGGTGGGGGCCGATTCATCACCTTTCTCAAGATCCTCATCGCCATAATCATCGTCGTTGGTCTCGCCGTATTGATCTTATGGCTCATATTCCGTCCCAACAAAGTCAAATTCAACGTCACCGACGCTAAACTCACCCAATTCAACCTCATCGGCAACCAGCTCCATTACAACTTGGCCCTCAACGTCACAGTGAGAAACCCCAACAAGCGAATCGGGGTGTACTACGATAGCATAGAATCCTCCCCCATTTACAAAGACCAGCGCCTAGAGACCCAGTGGCTGCCGCCATTTTACCAAGGCTACAAAACCACGGCCGTCATCAGCTGCGTTTTCTCCGGGCAGCAGCTCCTCCTTCTCGCCGGCCAGGGGCTGACAGAGTTCAACGCGGAGACAGTTGCGGGCGTGTACGAGATGAACGTGGAGCTTAATCTTCGGATCAGGTTGAAGTTTGGTGCCGTTAGGATAGGGAAGTTTAAGCCTAAGGTGAATTGTGAGTTTAAAGTTCCGTTGAGTTCCGATGGAAACTCAGTTGTTGGTTCGGTGTTTGAGTCTACCGGCTGTGATATTGATTATTGGTGA

Coding sequence (CDS)

CTGTGGTGGGGGCCGATTCATCACCTTTCTCAAGATCCTCATCGCCATAATCATCGTCGTTGGTCTCGCCGTATTGATCTTATGGCTCATATTCCGTCCCAACAAAGTCAAATTCAACGTCACCGACGCTAAACTCACCCAATTCAACCTCATCGGCAACCAGCTCCATTACAACTTGGCCCTCAACGTCACAGTGAGAAACCCCAACAAGCGAATCGGGGTGTACTACGATAGCATAGAATCCTCCCCCATTTACAAAGACCAGCGCCTAGAGACCCAGTGGCTGCCGCCATTTTACCAAGGCTACAAAACCACGGCCGTCATCAGCTGCGTTTTCTCCGGGCAGCAGCTCCTCCTTCTCGCCGGCCAGGGGCTGACAGAGTTCAACGCGGAGACAGTTGCGGGCGTGTACGAGATGAACGTGGAGCTTAATCTTCGGATCAGGTTGAAGTTTGGTGCCGTTAGGATAGGGAAGTTTAAGCCTAAGGTGAATTGTGAGTTTAAAGTTCCGTTGAGTTCCGATGGAAACTCAGTTGTTGGTTCGGTGTTTGAGTCTACCGGCTGTGATATTGATTATTGGTGA

Protein sequence

CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLALNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVGSVFESTGCDIDYW*
Homology
[Close]
BLAST of Cucsa.241710 vs. Swiss-Prot
Match: NHL3_ARATH (NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-45
Identity = 95/194 (48.97%), Postives = 127/194 (65.46%), Query Frame = 1 

Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIG-NQLHYNL 60
           CG         ILI I +++G+A LI+WLIFRPN +KF+VTDAKLT+F L   N L YNL
Sbjct: 40  CGCCILSVIFNILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNL 99

Query: 61  ALNVTVRNPNKRIGVYYDSIESSPIYKDQRLE-TQWLPPFYQGYKTTAVISCVFSGQQLL 120
            LN T+RNPN+RIGVYYD IE    Y DQR   +  +  FYQG+K T V+     GQQL+
Sbjct: 100 DLNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLV 159

Query: 121 LLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSV 180
           LL G    + N +  + +Y ++ +L L+IR KFG ++  +FKPK+ C+ KVPL+S  NS 
Sbjct: 160 LLDGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTS--NST 219

Query: 181 VGSVFESTGCDIDY 193
            G VF+ T CD+D+
Sbjct: 220 SGFVFQPTKCDVDF 231

[Close]
BLAST of Cucsa.241710 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.5e-42
Identity = 89/196 (45.41%), Postives = 127/196 (64.80%), Query Frame = 1 

Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIG--NQLHYN 60
           CG      F+K++I++I+++G+A LI WLI RP  +KF+VTDA LT+F+     N L YN
Sbjct: 33  CGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYN 92

Query: 61  LALNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLL 120
           LAL V VRNPNKRIG+YYD IE+   Y+ +R  T  L PFYQG+K T V++  F GQ L+
Sbjct: 93  LALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLV 152

Query: 121 LL-AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNC-EFKVPLSSDGN 180
           +  AGQ  T  NAE ++GVY + ++  LR+R K G ++  + KPKV+C + ++PLS+   
Sbjct: 153 IFNAGQSRT-LNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDCDDLRLPLSTSNG 212

Query: 181 SVVGSVFESTGCDIDY 193
           +   S      CD D+
Sbjct: 213 TTTTSTVFPIKCDFDF 227

[Close]
BLAST of Cucsa.241710 vs. Swiss-Prot
Match: SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-22
Identity = 57/150 (38.00%), Postives = 87/150 (58.00%), Query Frame = 1 

Query: 32  RPNKVKFNVTDAKLTQFNL-IGNQLHYNLALNVTVRNPNKRIGVYYDSIESSPIYKDQRL 91
           R N VKF V DA+LT F+L   N L Y+L+LN+++RN    IG++YD  E++  Y +QRL
Sbjct: 3   RSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 62

Query: 92  ETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLK 151
               +P FY G K T ++  +F GQ L+LL G    +F  +   GVY ++V+L++  R+ 
Sbjct: 63  GAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVM 122

Query: 152 FGAVRIGKFKPKVNCEFKVPLSSDGNSVVG 181
              +     KP V C  K+PL+   ++  G
Sbjct: 123 VLHLVTWPMKPVVRCHLKIPLALGSSNSTG 152

[Close]
BLAST of Cucsa.241710 vs. Swiss-Prot
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-15
Identity = 53/179 (29.61%), Postives = 87/179 (48.60%), Query Frame = 1 

Query: 2   GGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLI-GNQLHYNLA 61
           GGG       ++I  II+V + + ++W+I +P K +F + DA +  FNL   N L  N  
Sbjct: 14  GGGTASRICGVIIGFIIIVLITIFLVWIILQPTKPRFILQDATVYAFNLSQPNLLTSNFQ 73

Query: 62  LNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQW-LPPFYQGYKTTAVISCVFSGQQLLL 121
           + +  RN N RIG+YYD +     Y++Q++  +  +PP YQG+K   V S    G   + 
Sbjct: 74  ITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNS-VP 133

Query: 122 LAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSV 179
           +A         E   G   + +  + R+R K G +  GK+   V C+  + L+     V
Sbjct: 134 IAPFNAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFINLADKAAGV 191

[Close]
BLAST of Cucsa.241710 vs. Swiss-Prot
Match: Y1816_ARATH (Uncharacterized protein At1g08160 OS=Arabidopsis thaliana GN=At1g08160 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-07
Identity = 41/155 (26.45%), Postives = 69/155 (44.52%), Query Frame = 1 

Query: 13  LIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLALNVTVR--NPNK 72
           L+ + ++VGLA+LI +L  RP ++ + V  A + +F +  N  H N   +  ++  NP K
Sbjct: 44  LVLLGLLVGLAILITYLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPEK 103

Query: 73  RIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTEFNA 132
            + V Y S+  S  + +Q +  + + PF Q  K    I         + L+     +  A
Sbjct: 104 HVSVRYHSMRISTAHHNQSVAHKNISPFKQRPKNETRIETQLVSHN-VALSKFNARDLRA 163

Query: 133 ETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNC 166
           E   G  EM V +  R+  K    R  +   K  C
Sbjct: 164 EKSKGTIEMEVYITARVSYKTWIFRSRRRTLKAVC 197

[Close]
BLAST of Cucsa.241710 vs. TrEMBL
Match: A0A0A0LE50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778990 PE=4 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 8.7e-106
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1 

Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLA 60
           CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLA
Sbjct: 21  CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLA 80

Query: 61  LNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLL 120
           LNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLL
Sbjct: 81  LNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLL 140

Query: 121 AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVG 180
           AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVG
Sbjct: 141 AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVG 200

Query: 181 SVFESTGCDIDYW 194
           SVFESTGCDIDYW
Sbjct: 201 SVFESTGCDIDYW 213

[Close]
BLAST of Cucsa.241710 vs. TrEMBL
Match: A0A0A0LGS5_CUCSA (Hairpin-inducing protein OS=Cucumis sativus GN=Csa_3G779010 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.1e-68
Identity = 126/185 (68.11%), Postives = 158/185 (85.41%), Query Frame = 1 

Query: 8   TFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLALNVTVRN 67
           TFLK LIAI++V+G+AVL+ WL+FRPNK+KF+VT A+LT+FN+ GNQLHY+LALN+TVRN
Sbjct: 40  TFLKFLIAIVVVLGVAVLVFWLVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRN 99

Query: 68  PNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTE 127
           PNKRIGVYYD IE+SP YKDQRL TQWL PFYQG+KTT+V+S  F GQQ+++ AG  LTE
Sbjct: 100 PNKRIGVYYDVIEASPYYKDQRLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTE 159

Query: 128 FNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVGSVFESTG 187
           FN ET+AGV+E++V++ LR+RLK GAVRIGKF+PKVNCE KVPL S+ NS     F++T 
Sbjct: 160 FNGETLAGVFEVDVKIRLRLRLKVGAVRIGKFRPKVNCELKVPLKSNPNSF---TFQTTR 219

Query: 188 CDIDY 193
           CD D+
Sbjct: 220 CDFDF 221

[Close]
BLAST of Cucsa.241710 vs. TrEMBL
Match: A0A0A0LBJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G779020 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-67
Identity = 122/185 (65.95%), Postives = 154/185 (83.24%), Query Frame = 1 

Query: 8   TFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLALNVTVRN 67
           TFLK+L+ I++VVG+AVLILW +FRP+K+ F+VTDA+LT+FN+ GNQLHYNLALN+T+RN
Sbjct: 40  TFLKLLVTIVVVVGIAVLILWFLFRPHKLTFDVTDAELTRFNISGNQLHYNLALNLTIRN 99

Query: 68  PNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTE 127
           PNKRIGVYYD IE+SP YKDQRL TQWLPPFYQG+KTT V+S  F GQQ++ LAG  LTE
Sbjct: 100 PNKRIGVYYDVIEASPFYKDQRLNTQWLPPFYQGHKTTTVLSPHFDGQQIVFLAGDKLTE 159

Query: 128 FNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVGSVFESTG 187
           FN ET+AG++ +++   L++RLK G VRIGKFKPKVNCE KVPL S+ NS   +  ++T 
Sbjct: 160 FNGETLAGIFNVDLRFRLQLRLKVGVVRIGKFKPKVNCELKVPLKSNANSF--TFLQATR 219

Query: 188 CDIDY 193
           CD D+
Sbjct: 220 CDFDF 222

[Close]
BLAST of Cucsa.241710 vs. TrEMBL
Match: B9T2S1_RICCO (Syntaxin, plant, putative OS=Ricinus communis GN=RCOM_0437400 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.1e-55
Identity = 108/192 (56.25%), Postives = 141/192 (73.44%), Query Frame = 1 

Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLA 60
           CG       LKI+I I +V+GLAVLI WL+ RPNKVKF+VT+A L++FN+  N LHYNLA
Sbjct: 33  CGCCLLSCLLKIIITIAVVLGLAVLIFWLVVRPNKVKFHVTEANLSEFNINNNTLHYNLA 92

Query: 61  LNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLL 120
           LN+TVRNPNK+IG+YYD IE+   Y+DQR  +Q+L PFYQG+K T++++  F GQQL+LL
Sbjct: 93  LNITVRNPNKKIGIYYDRIEARGKYEDQRFGSQFLTPFYQGHKNTSILTPAFQGQQLMLL 152

Query: 121 AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVG 180
           +G  LT+FN E V+GVY ++V L L+IR K G ++IGKFKPK+ CE KVP +S       
Sbjct: 153 SGDELTDFNEERVSGVYSIDVTLYLKIRFKIGDLKIGKFKPKIQCELKVPSNSS-----A 212

Query: 181 SVFESTGCDIDY 193
             F+ T CD DY
Sbjct: 213 VPFQRTECDWDY 219

[Close]
BLAST of Cucsa.241710 vs. TrEMBL
Match: A0A0D2MF43_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G235900 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.6e-54
Identity = 104/193 (53.89%), Postives = 141/193 (73.06%), Query Frame = 1 

Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQ-LHYNL 60
           CG         I+I  I+++GLAV I WLIFRPNKVKF+VTD +LTQFNL  N  LHYNL
Sbjct: 35  CGCCLLKCLFNIIITAIVIIGLAVFIFWLIFRPNKVKFHVTDVQLTQFNLTSNNTLHYNL 94

Query: 61  ALNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLL 120
           ALN+T+RNPN+RIG+YYD IE+   Y+DQR +T+ L PFYQG+K T+ ++ VF GQQ + 
Sbjct: 95  ALNMTIRNPNRRIGIYYDRIEARAYYEDQRFDTETLTPFYQGHKNTSYLNPVFVGQQFVR 154

Query: 121 LAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVV 180
           L     +EFN + V GVY+++V+L LRIR K G V+ G+FKP+++C+ KVPL++ GN   
Sbjct: 155 LGADETSEFNEDRVNGVYDIDVKLYLRIRFKLGRVKTGRFKPRISCDLKVPLNT-GNGSF 214

Query: 181 GSVFESTGCDIDY 193
           G  F++T CD+D+
Sbjct: 215 GGTFKTTRCDLDF 226

[Close]
BLAST of Cucsa.241710 vs. TAIR10
Match: AT5G06320.1 (AT5G06320.1 NDR1/HIN1-like 3)

HSP 1 Score: 184.5 bits (467), Expect = 6.2e-47
Identity = 95/194 (48.97%), Postives = 127/194 (65.46%), Query Frame = 1 

Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIG-NQLHYNL 60
           CG         ILI I +++G+A LI+WLIFRPN +KF+VTDAKLT+F L   N L YNL
Sbjct: 40  CGCCILSVIFNILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNL 99

Query: 61  ALNVTVRNPNKRIGVYYDSIESSPIYKDQRLE-TQWLPPFYQGYKTTAVISCVFSGQQLL 120
            LN T+RNPN+RIGVYYD IE    Y DQR   +  +  FYQG+K T V+     GQQL+
Sbjct: 100 DLNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLV 159

Query: 121 LLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSV 180
           LL G    + N +  + +Y ++ +L L+IR KFG ++  +FKPK+ C+ KVPL+S  NS 
Sbjct: 160 LLDGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTS--NST 219

Query: 181 VGSVFESTGCDIDY 193
            G VF+ T CD+D+
Sbjct: 220 SGFVFQPTKCDVDF 231

[Close]
BLAST of Cucsa.241710 vs. TAIR10
Match: AT2G35980.1 (AT2G35980.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 174.1 bits (440), Expect = 8.4e-44
Identity = 89/196 (45.41%), Postives = 127/196 (64.80%), Query Frame = 1 

Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIG--NQLHYN 60
           CG      F+K++I++I+++G+A LI WLI RP  +KF+VTDA LT+F+     N L YN
Sbjct: 33  CGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYN 92

Query: 61  LALNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLL 120
           LAL V VRNPNKRIG+YYD IE+   Y+ +R  T  L PFYQG+K T V++  F GQ L+
Sbjct: 93  LALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLV 152

Query: 121 LL-AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNC-EFKVPLSSDGN 180
           +  AGQ  T  NAE ++GVY + ++  LR+R K G ++  + KPKV+C + ++PLS+   
Sbjct: 153 IFNAGQSRT-LNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDCDDLRLPLSTSNG 212

Query: 181 SVVGSVFESTGCDIDY 193
           +   S      CD D+
Sbjct: 213 TTTTSTVFPIKCDFDF 227

[Close]
BLAST of Cucsa.241710 vs. TAIR10
Match: AT3G11650.1 (AT3G11650.1 NDR1/HIN1-like 2)

HSP 1 Score: 164.1 bits (414), Expect = 8.7e-41
Identity = 86/193 (44.56%), Postives = 115/193 (59.59%), Query Frame = 1 

Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLI-GNQLHYNL 60
           CG         ILIA+ +++G+A LILWLIFRPN VKF V DA L +F+    N LHY+L
Sbjct: 47  CGCCILSLICNILIAVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNNLHYSL 106

Query: 61  ALNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLL 120
            LN T+RNPN+R+GVYYD    S  Y DQR  +  +  FYQG+K T VI     GQ L++
Sbjct: 107 DLNFTIRNPNQRVGVYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTVILTKIEGQNLVV 166

Query: 121 LAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNC-EFKVPLSSDGNSV 180
           L     T+   +  +G+Y +N +L L +R KF  ++  K KPK+ C + K+PL S  NS 
Sbjct: 167 LGDGARTDLKDDEKSGIYRINAKLRLSVRFKFWFIKSWKLKPKIKCDDLKIPLGS-SNST 226

Query: 181 VGSVFESTGCDID 192
            G  F+   CD D
Sbjct: 227 GGFKFQPVQCDFD 238

[Close]
BLAST of Cucsa.241710 vs. TAIR10
Match: AT2G35460.1 (AT2G35460.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 159.5 bits (402), Expect = 2.1e-39
Identity = 79/193 (40.93%), Postives = 116/193 (60.10%), Query Frame = 1 

Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLI--GNQLHYN 60
           CGG        ILI +++ +G+  LILW I RPN VKF VT+A LT+F      + LHYN
Sbjct: 46  CGGCLVNIICNILIGVLVCLGVVALILWFILRPNVVKFQVTEADLTRFEFDPRSHNLHYN 105

Query: 61  LALNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLL 120
           ++LN ++RNPN+R+G++YD +E    Y DQR     +  FYQG+K T V+    +GQ+L+
Sbjct: 106 ISLNFSIRNPNQRLGIHYDQLEVRGYYGDQRFSAANMTSFYQGHKNTTVVGTELNGQKLV 165

Query: 121 LLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSV 180
           LL   G  +F  +  +GVY ++V+L  ++R KFG +     +PK+ C  KVPLS+  +S 
Sbjct: 166 LLGAGGRRDFREDRRSGVYRIDVKLRFKLRFKFGFLNSWAVRPKIKCHLKVPLST-SSSD 225

Query: 181 VGSVFESTGCDID 192
               F  T C +D
Sbjct: 226 ERFQFHPTKCHVD 237

[Close]
BLAST of Cucsa.241710 vs. TAIR10
Match: AT1G32270.1 (AT1G32270.1 syntaxin, putative)

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-24
Identity = 57/150 (38.00%), Postives = 87/150 (58.00%), Query Frame = 1 

Query: 32  RPNKVKFNVTDAKLTQFNL-IGNQLHYNLALNVTVRNPNKRIGVYYDSIESSPIYKDQRL 91
           R N VKF V DA+LT F+L   N L Y+L+LN+++RN    IG++YD  E++  Y +QRL
Sbjct: 3   RSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 62

Query: 92  ETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLK 151
               +P FY G K T ++  +F GQ L+LL G    +F  +   GVY ++V+L++  R+ 
Sbjct: 63  GAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVM 122

Query: 152 FGAVRIGKFKPKVNCEFKVPLSSDGNSVVG 181
              +     KP V C  K+PL+   ++  G
Sbjct: 123 VLHLVTWPMKPVVRCHLKIPLALGSSNSTG 152

[Close]
BLAST of Cucsa.241710 vs. NCBI nr
Match: gi|778684445|ref|XP_011652030.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 391.0 bits (1003), Expect = 1.2e-105
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1 

Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLA 60
           CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLA
Sbjct: 21  CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLA 80

Query: 61  LNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLL 120
           LNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLL
Sbjct: 81  LNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLL 140

Query: 121 AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVG 180
           AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVG
Sbjct: 141 AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVG 200

Query: 181 SVFESTGCDIDYW 194
           SVFESTGCDIDYW
Sbjct: 201 SVFESTGCDIDYW 213

[Close]
BLAST of Cucsa.241710 vs. NCBI nr
Match: gi|659084476|ref|XP_008442907.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 372.1 bits (954), Expect = 6.0e-100
Identity = 182/193 (94.30%), Postives = 189/193 (97.93%), Query Frame = 1 

Query: 1   CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLA 60
           CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLI NQLH+N A
Sbjct: 21  CGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIDNQLHFNFA 80

Query: 61  LNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLL 120
           LNVTVRNPNKRIGVYYD+IESS IYK+QRL+TQWLPPFYQGYKTTAVISCVFSGQQLLLL
Sbjct: 81  LNVTVRNPNKRIGVYYDTIESSAIYKNQRLQTQWLPPFYQGYKTTAVISCVFSGQQLLLL 140

Query: 121 AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVG 180
           AGQGLTEFNAE VAGVYEMN+ELNLRIRLKFGAVR+GKFKPKVNCEFKVPLSSDG+SVVG
Sbjct: 141 AGQGLTEFNAERVAGVYEMNMELNLRIRLKFGAVRVGKFKPKVNCEFKVPLSSDGSSVVG 200

Query: 181 SVFESTGCDIDYW 194
           SVFESTGCDIDYW
Sbjct: 201 SVFESTGCDIDYW 213

[Close]
BLAST of Cucsa.241710 vs. NCBI nr
Match: gi|449437456|ref|XP_004136508.1| (PREDICTED: protein YLS9 [Cucumis sativus])

HSP 1 Score: 267.7 bits (683), Expect = 1.6e-68
Identity = 126/185 (68.11%), Postives = 158/185 (85.41%), Query Frame = 1 

Query: 8   TFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLALNVTVRN 67
           TFLK LIAI++V+G+AVL+ WL+FRPNK+KF+VT A+LT+FN+ GNQLHY+LALN+TVRN
Sbjct: 40  TFLKFLIAIVVVLGVAVLVFWLVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRN 99

Query: 68  PNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTE 127
           PNKRIGVYYD IE+SP YKDQRL TQWL PFYQG+KTT+V+S  F GQQ+++ AG  LTE
Sbjct: 100 PNKRIGVYYDVIEASPYYKDQRLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTE 159

Query: 128 FNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVGSVFESTG 187
           FN ET+AGV+E++V++ LR+RLK GAVRIGKF+PKVNCE KVPL S+ NS     F++T 
Sbjct: 160 FNGETLAGVFEVDVKIRLRLRLKVGAVRIGKFRPKVNCELKVPLKSNPNSF---TFQTTR 219

Query: 188 CDIDY 193
           CD D+
Sbjct: 220 CDFDF 221

[Close]
BLAST of Cucsa.241710 vs. NCBI nr
Match: gi|659084478|ref|XP_008442908.1| (PREDICTED: protein YLS9 [Cucumis melo])

HSP 1 Score: 266.9 bits (681), Expect = 2.7e-68
Identity = 126/185 (68.11%), Postives = 154/185 (83.24%), Query Frame = 1 

Query: 8   TFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLALNVTVRN 67
           TFLK  IAI++V+G+ VL+LWL+FRPNK+KF+VT A+LT+FN+ GNQLHYNLALN+TVRN
Sbjct: 40  TFLKFFIAIVVVLGVTVLVLWLVFRPNKLKFHVTGAELTRFNVSGNQLHYNLALNLTVRN 99

Query: 68  PNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTE 127
           PNKRIGVYYD IE+SP YKDQRL TQWL PFYQG+KTT V+S  F GQQ++  AG  LTE
Sbjct: 100 PNKRIGVYYDVIEASPYYKDQRLNTQWLTPFYQGHKTTTVLSPHFDGQQIVFFAGDKLTE 159

Query: 128 FNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVGSVFESTG 187
           FN ET+AG++E++V+  LR+RLK GAVRIGKFKPKVNCE KVPL S+ NS     F++T 
Sbjct: 160 FNGETLAGIFEVDVKFRLRLRLKVGAVRIGKFKPKVNCELKVPLKSNPNSFTS--FQTTR 219

Query: 188 CDIDY 193
           CD D+
Sbjct: 220 CDFDF 222

[Close]
BLAST of Cucsa.241710 vs. NCBI nr
Match: gi|778684454|ref|XP_011652031.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 1.8e-67
Identity = 122/185 (65.95%), Postives = 154/185 (83.24%), Query Frame = 1 

Query: 8   TFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGNQLHYNLALNVTVRN 67
           TFLK+L+ I++VVG+AVLILW +FRP+K+ F+VTDA+LT+FN+ GNQLHYNLALN+T+RN
Sbjct: 40  TFLKLLVTIVVVVGIAVLILWFLFRPHKLTFDVTDAELTRFNISGNQLHYNLALNLTIRN 99

Query: 68  PNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTE 127
           PNKRIGVYYD IE+SP YKDQRL TQWLPPFYQG+KTT V+S  F GQQ++ LAG  LTE
Sbjct: 100 PNKRIGVYYDVIEASPFYKDQRLNTQWLPPFYQGHKTTTVLSPHFDGQQIVFLAGDKLTE 159

Query: 128 FNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVGSVFESTG 187
           FN ET+AG++ +++   L++RLK G VRIGKFKPKVNCE KVPL S+ NS   +  ++T 
Sbjct: 160 FNGETLAGIFNVDLRFRLQLRLKVGVVRIGKFKPKVNCELKVPLKSNANSF--TFLQATR 219

Query: 188 CDIDY 193
           CD D+
Sbjct: 220 CDFDF 222

The following BLAST results are available for this feature:
BLAST of Cucsa.241710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NHL3_ARATH1.1e-4548.97NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1[more]
YLS9_ARATH1.5e-4245.41Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1[more]
SYP24_ARATH1.0e-2238.00Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1[more]
NHL12_ARATH1.6e-1529.61NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1[more]
Y1816_ARATH1.2e-0726.45Uncharacterized protein At1g08160 OS=Arabidopsis thaliana GN=At1g08160 PE=2 SV=1[more]
BLAST of Cucsa.241710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LE50_CUCSA8.7e-106100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778990 PE=4 SV=1[more]
A0A0A0LGS5_CUCSA1.1e-6868.11Hairpin-inducing protein OS=Cucumis sativus GN=Csa_3G779010 PE=4 SV=1[more]
A0A0A0LBJ4_CUCSA1.2e-6765.95Uncharacterized protein OS=Cucumis sativus GN=Csa_3G779020 PE=4 SV=1[more]
B9T2S1_RICCO3.1e-5556.25Syntaxin, plant, putative OS=Ricinus communis GN=RCOM_0437400 PE=4 SV=1[more]
A0A0D2MF43_GOSRA2.6e-5453.89Uncharacterized protein OS=Gossypium raimondii GN=B456_002G235900 PE=4 SV=1[more]
BLAST of Cucsa.241710 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G06320.16.2e-4748.97 NDR1/HIN1-like 3[more]
AT2G35980.18.4e-4445.41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
AT3G11650.18.7e-4144.56 NDR1/HIN1-like 2[more]
AT2G35460.12.1e-3940.93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
AT1G32270.15.7e-2438.00 syntaxin, putative[more]
BLAST of Cucsa.241710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778684445|ref|XP_011652030.1|1.2e-105100.00PREDICTED: protein YLS9-like [Cucumis sativus][more]
gi|659084476|ref|XP_008442907.1|6.0e-10094.30PREDICTED: protein YLS9-like [Cucumis melo][more]
gi|449437456|ref|XP_004136508.1|1.6e-6868.11PREDICTED: protein YLS9 [Cucumis sativus][more]
gi|659084478|ref|XP_008442908.1|2.7e-6868.11PREDICTED: protein YLS9 [Cucumis melo][more]
gi|778684454|ref|XP_011652031.1|1.8e-6765.95PREDICTED: protein YLS9-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004864LEA_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.241710.1Cucsa.241710.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004864Late embryogenesis abundant protein, LEA-14PFAMPF03168LEA_2coord: 62..165
score: 3.8
NoneNo IPR availablePANTHERPTHR31415FAMILY NOT NAMEDcoord: 6..192
score: 1.2
NoneNo IPR availablePANTHERPTHR31415:SF4HARPIN-INDUCED PROTEIN-LIKE-RELATEDcoord: 6..192
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.241710Cla017637Watermelon (97103) v1cgywmB456
Cucsa.241710MELO3C009531Melon (DHL92) v3.5.1cgymeB412
Cucsa.241710ClCG10G018420Watermelon (Charleston Gray)cgywcgB426
Cucsa.241710Lsi01G011890Bottle gourd (USVL1VR-Ls)cgylsiB398
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cucsa.241710Cucsa.185880Cucumber (Gy14) v1cgycgyB110
The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.241710Cucurbita pepo (Zucchini)cgycpeB0640
Cucsa.241710Cucurbita pepo (Zucchini)cgycpeB0643
Cucsa.241710Cucurbita pepo (Zucchini)cgycpeB0644
Cucsa.241710Cucurbita pepo (Zucchini)cgycpeB0650
Cucsa.241710Bottle gourd (USVL1VR-Ls)cgylsiB395
Cucsa.241710Bottle gourd (USVL1VR-Ls)cgylsiB402
Cucsa.241710Melon (DHL92) v3.6.1cgymedB408
Cucsa.241710Melon (DHL92) v3.6.1cgymedB409
Cucsa.241710Melon (DHL92) v3.6.1cgymedB410
Cucsa.241710Silver-seed gourdcarcgyB0282
Cucsa.241710Silver-seed gourdcarcgyB0294
Cucsa.241710Silver-seed gourdcarcgyB0481
Cucsa.241710Silver-seed gourdcarcgyB0758
Cucsa.241710Silver-seed gourdcarcgyB0923
Cucsa.241710Cucumber (Chinese Long) v3cgycucB363
Cucsa.241710Cucumber (Chinese Long) v3cgycucB365
Cucsa.241710Cucumber (Chinese Long) v3cgycucB366
Cucsa.241710Watermelon (97103) v2cgywmbB427
Cucsa.241710Watermelon (97103) v2cgywmbB425
Cucsa.241710Wax gourdcgywgoB489
Cucsa.241710Wax gourdcgywgoB484
Cucsa.241710Wax gourdcgywgoB487
Cucsa.241710Cucumber (Gy14) v1cgycgyB027
Cucsa.241710Cucumber (Gy14) v1cgycgyB124
Cucsa.241710Cucurbita maxima (Rimu)cgycmaB0683
Cucsa.241710Cucurbita maxima (Rimu)cgycmaB0674
Cucsa.241710Cucurbita maxima (Rimu)cgycmaB0678
Cucsa.241710Cucurbita maxima (Rimu)cgycmaB0680
Cucsa.241710Cucurbita maxima (Rimu)cgycmaB0681
Cucsa.241710Cucurbita moschata (Rifu)cgycmoB0675
Cucsa.241710Cucurbita moschata (Rifu)cgycmoB0680
Cucsa.241710Cucurbita moschata (Rifu)cgycmoB0681
Cucsa.241710Cucurbita moschata (Rifu)cgycmoB0683
Cucsa.241710Wild cucumber (PI 183967)cgycpiB358
Cucsa.241710Wild cucumber (PI 183967)cgycpiB360
Cucsa.241710Wild cucumber (PI 183967)cgycpiB362
Cucsa.241710Wild cucumber (PI 183967)cgycpiB363
Cucsa.241710Cucumber (Chinese Long) v2cgycuB342
Cucsa.241710Cucumber (Chinese Long) v2cgycuB344
Cucsa.241710Cucumber (Chinese Long) v2cgycuB347
Cucsa.241710Melon (DHL92) v3.5.1cgymeB414
Cucsa.241710Melon (DHL92) v3.5.1cgymeB415
Cucsa.241710Watermelon (Charleston Gray)cgywcgB428