Cucsa.235820.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.235820.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Auxin-responsive protein
Location	scaffold02012 : 579827 .. 581050 (+)
Sequence length	806

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTTCTTATTACTTTATCATCTACTTCTAACCTTCTATATATATGTGTGTGTGTATATATATATATAATATGAAATGAAAACCACACACCAAACAATTTTAATTCATTTCAAATCAAACCATTTTCTCTCAGGCAGAGCAACATATTATATGTTATGTCGTCCTCCGAGACACTTCCGGAGTCGCCCCAATCTGATTTGACTCAAATCAATTTCGATGAAACTGAGCTCACATTGGGACTTCCCGGAGCCGAGTTCCGGCCAACAACTGATCATAAATCCAACGCCAAACGTTGTTTCCATGACACTGTTGATGCCGATGTCGGGAGCTCGACAAGCAAACCGCGTGACAGTCTTGATGATGAGCCACCCCATGGCTCTTCTGGAAATGGTACGTTTCGATATGTATACGGCTCTGATTGAGTATGGCAATTAAAATTTTTATGTATCTTTGGTTGTTCATATATTGAAAGGTAGATTATTAATATATATGAATATATTATAGAGGAAAAGCGGGCAGTGATGGGTTGGCCACCGGTGAGATCATACAGAAAAAGGACAATAGAAATGAACAGCACAACTACTACTAAGTACGTTAAAGTTGGGGCTGATGGTGCGCCATATCTGCGTAAGCTTGACCTTCAGATCTTCAATGGCTACCATCAACTATTTAACGCTTTACACCATTTGTTTACCTCCTTCCCTATTTCTTGTGAGTACTCACAATAATACATAATTCCGATCTCTTTCTTTATTATTATTATAAATCTTTTCTTAACTTCAACAATAAATATGATACGTCTCTAACTCGGTACTAACTAGTCAGATGTGTCTTTGTCTATTAAGCTATGTGTATATAATTAATAGTGTGACTGCATTTAACAACATCATTGTAGTTAACTTAACTAGATCAAGAATATATCGAGTAGTAAAATTCATCCAACTCTAATTTAAGTTATATTTTATAAGATTTTGAATTTAAATTATAATTTAACGCACGATAAATTATATCATAGGTGATTACTTAGAAGGAGGAAGCAATTTGAACCCAGCTGTGAAAAGAGCAGATGAATACTTACCAACTTATGAAGATAAAGATGGAGATTGGATGTTAGTAGGAGATGTCCCTTGGAAGTAAGTTTAATTATTATTACCATAACTTTCAATTTCATCTTATTTAACTAATTATTATTAATAATTAACCTTCTTCAATTTGCCTCAGCT

mRNA sequence

CTCTTTCTTATTACTTTATCATCTACTTCTAACCTTCtatatatatgtgtgtgtgtatatatatatataATATGAAATGAAAACCACACACCAAACAATTTTAATTCATTTCAAATCAAACCATTTTCTCTCAGGCAGAGCAACATATTATATGTTATGTCGTCCTCCGAGACACTTCCGGAGTCGCCCCAATCTGATTTGACTCAAATCAATTTCGATGAAACTGAGCTCACATTGGGACTTCCCGGAGCCGAGTTCCGGCCAACAACTGATCATAAATCCAACGCCAAACGTTGTTTCCATGACACTGTTGATGCCGATGTCGGGAGCTCGACAAGCAAACCGCGTGACAGTCTTGATGATGAGCCACCCCATGGCTCTTCTGGAAATGAGGAAAAGCGGGCAGTGATGGGTTGGCCACCGGTGAGATCATACAGAAAAAGGACAATAGAAATGAACAGCACAACTACTACTAAGTACGTTAAAGTTGGGGCTGATGGTGCGCCATATCTGCGTAAGCTTGACCTTCAGATCTTCAATGGCTACCATCAACTATTTAACGCTTTACACCATTTGTTTACCTCCTTCCCTATTTCTTGTGATTACTTAGAAGGAGGAAGCAATTTGAACCCAGCTGTGAAAAGAGCAGATGAATACTTACCAACTTATGAAGATAAAGATGGAGATTGGATGTTAGTAGGAGATGTCCCTTGGAAGTAAGTTTAATTATTATTACCATAACTTTCAATTTCATCttatttaactaattattattaataattaaCCTTCTTCAATTTGCCTCAGCT

Coding sequence (CDS)

ATGTCGTCCTCCGAGACACTTCCGGAGTCGCCCCAATCTGATTTGACTCAAATCAATTTCGATGAAACTGAGCTCACATTGGGACTTCCCGGAGCCGAGTTCCGGCCAACAACTGATCATAAATCCAACGCCAAACGTTGTTTCCATGACACTGTTGATGCCGATGTCGGGAGCTCGACAAGCAAACCGCGTGACAGTCTTGATGATGAGCCACCCCATGGCTCTTCTGGAAATGAGGAAAAGCGGGCAGTGATGGGTTGGCCACCGGTGAGATCATACAGAAAAAGGACAATAGAAATGAACAGCACAACTACTACTAAGTACGTTAAAGTTGGGGCTGATGGTGCGCCATATCTGCGTAAGCTTGACCTTCAGATCTTCAATGGCTACCATCAACTATTTAACGCTTTACACCATTTGTTTACCTCCTTCCCTATTTCTTGTGATTACTTAGAAGGAGGAAGCAATTTGAACCCAGCTGTGAAAAGAGCAGATGAATACTTACCAACTTATGAAGATAAAGATGGAGATTGGATGTTAGTAGGAGATGTCCCTTGGAAGTAA

Protein sequence

MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSSTSKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDWMLVGDVPWK*

Homology

[Close]

BLAST of Cucsa.235820.2 vs. Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 7.0e-29
Identity = 81/189 (42.86%), Postives = 102/189 (53.97%), Query Frame = 1


Query: 3   SSETLPESPQSDLTQ-INFDETELTLGLPG---AEFRPTTDHKSNAKRCFHDTVDADVGS 62
           S ET   S +S     ++F++T LTL LPG   A   P  D K ++      + DA   +
Sbjct: 2   SVETERSSTESSAASGLDFEDTALTLRLPGSLAAAAAPDPDRKRSSP----SSSDAADAA 61

Query: 63  STSKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPY 122
             S P  +  D PP        K  V+GWPPVRS+RK  +        K+VKV  DGAPY
Sbjct: 62  DNSSPLAAAADAPP------APKARVVGWPPVRSFRKNAL------AAKFVKVAVDGAPY 121

Query: 123 LRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDW 182
           LRK+DL+ ++GY QL  AL   F S      + +    L  AV    EY+PTYEDKDGDW
Sbjct: 122 LRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFADDERKLVDAVN-GTEYVPTYEDKDGDW 173

Query: 183 MLVGDVPWK 188
           MLVGDVPWK
Sbjct: 182 MLVGDVPWK 173

[Close]

BLAST of Cucsa.235820.2 vs. Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 7.0e-29
Identity = 84/210 (40.00%), Postives = 105/210 (50.00%), Query Frame = 1


Query: 18  INFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVG-SSTSKPRDSLDD------- 77
           INF+ TEL LGLPG         K+N KR F +TVD  +  SST+    S  D       
Sbjct: 2   INFEATELRLGLPGGNHGGEMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKVDLENMKEK 61

Query: 78  --EPPHGSSGNEEKRAVMGWPPVRSYRKR-------------------------TIEMNS 137
             +PP        K  V+GWPPVRS+RK                          T   ++
Sbjct: 62  VVKPP-------AKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASA 121

Query: 138 TTTTKYVKVGADGAPYLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVK 188
             T  YVKV  DGAPYLRK+DL+++  Y  L NAL  +F+SF I     +G  +     K
Sbjct: 122 CATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESK 181

[Close]

BLAST of Cucsa.235820.2 vs. Swiss-Prot
Match: IAA23_ORYSJ (Auxin-responsive protein IAA23 OS=Oryza sativa subsp. japonica GN=IAA23 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.9e-27
Identity = 78/193 (40.41%), Postives = 99/193 (51.30%), Query Frame = 1


Query: 1   MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST 60
           MS+S     SP   ++ +++D+T LTL LPG+    ++      KR  H           
Sbjct: 1   MSTSSGADSSPP--VSGLDYDDTALTLALPGSSSSSSSTADPERKRAAH----------- 60

Query: 61  SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR 120
               D  D +PP        K   +GWPPVR+YR+  +  +S    K VKV  DGAPYLR
Sbjct: 61  ---ADHADAKPP------SPKARAVGWPPVRAYRRNALREDSARA-KLVKVAVDGAPYLR 120

Query: 121 KLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLN-PAVKRAD-----EYLPTYEDK 180
           K+DL    GY  L  ALH +F S    C  + GG   +    K  D     EY+PTYEDK
Sbjct: 121 KVDLAAHAGYAPLLRALHGMFAS----CLAVRGGGGGDGEGTKLVDLVTGAEYVPTYEDK 166

Query: 181 DGDWMLVGDVPWK 188
           DGDWMLVGDVPWK
Sbjct: 181 DGDWMLVGDVPWK 166

[Close]

BLAST of Cucsa.235820.2 vs. Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.9e-27
Identity = 81/199 (40.70%), Postives = 108/199 (54.27%), Query Frame = 1


Query: 3   SSETLPESPQSDLTQ-INFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSSTS 62
           S ET   S +S     ++F++T LTL LPG+    ++   S++             SS S
Sbjct: 2   SVETERSSTESSAASGLDFEDTALTLRLPGSSSSSSSSSSSSSS------------SSPS 61

Query: 63  KP----RDSLDDEPPH--GSSGNEE----KRAVMGWPPVRSYRKRTIEM---NSTTTTKY 122
           +P      + DD+P +  GS+  E     K  V+GWPPVR++RK  +      S++  K+
Sbjct: 62  EPDRKRASATDDDPDNRLGSTATESPPSPKARVVGWPPVRAFRKNALAALAAASSSKAKF 121

Query: 123 VKVGADGAPYLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYL 182
           VKV  DGAPYLRK+DL+ + GY QL  AL   F S             L  AV   +EY+
Sbjct: 122 VKVAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNEEMKLVDAVS-GNEYV 181

Query: 183 PTYEDKDGDWMLVGDVPWK 188
           PTYEDKDGDWMLVGDVPWK
Sbjct: 182 PTYEDKDGDWMLVGDVPWK 187

[Close]

BLAST of Cucsa.235820.2 vs. Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 2.5e-26
Identity = 79/201 (39.30%), Postives = 100/201 (49.75%), Query Frame = 1


Query: 17  QINFDETELTLGLPGAE-----------FRPTTDHKSNAKR--------CFHDTVDADVG 76
           ++N  ETEL LGLPG +           F  T D K N             HD V  D  
Sbjct: 6   ELNLRETELCLGLPGGDTVAPVTGNKRGFSETVDLKLNLNNEPANKEGSTTHDVVTFDSK 65

Query: 77  SSTSKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTI-----EMNSTTTTKYVKVG 136
             ++ P+D    +PP        K  V+GWPPVRSYRK  +              +VKV 
Sbjct: 66  EKSACPKDPA--KPP-------AKAQVVGWPPVRSYRKNVMVSCQKSSGGPEAAAFVKVS 125

Query: 137 ADGAPYLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGG-------SNLNPAVKRAD 187
            DGAPYLRK+DL+++  Y +L NAL ++F+SF +     E G         L   V   D
Sbjct: 126 MDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWD 185

[Close]

BLAST of Cucsa.235820.2 vs. TrEMBL
Match: A0A0A0LUB1_CUCSA (Auxin-responsive protein OS=Cucumis sativus GN=Csa_1G397130 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 3.1e-84
Identity = 159/187 (85.03%), Postives = 159/187 (85.03%), Query Frame = 1


Query: 1   MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST 60
           MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST
Sbjct: 1   MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST 60

Query: 61  SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR 120
           SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR
Sbjct: 61  SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR 120

Query: 121 KLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDWML 180
                                       DYLEGGSNLNPAVKRADEYLPTYEDKDGDWML
Sbjct: 121 ----------------------------DYLEGGSNLNPAVKRADEYLPTYEDKDGDWML 159

Query: 181 VGDVPWK 188
           VGDVPWK
Sbjct: 181 VGDVPWK 159

[Close]

BLAST of Cucsa.235820.2 vs. TrEMBL
Match: A9PE61_POPTR (Auxin-responsive protein OS=Populus trichocarpa GN=POPTR_0001s17770g PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.6e-35
Identity = 82/183 (44.81%), Postives = 113/183 (61.75%), Query Frame = 1


Query: 12  QSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSSTSKPRD------ 71
           +SD   ++F ETELTLGLPG         K++ KR F +TVD ++G S++   D      
Sbjct: 11  ESDAANVSFKETELTLGLPGESRGLALIEKTSGKRGFLETVDLNLGRSSNVDSDHNKYSG 70

Query: 72  SLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLRKLDLQ 131
             + + P+ +     K  V+GWPPVR+YRK     N+  + KYVKV  DGAPYLRK+DL+
Sbjct: 71  ESETDVPNTAKPPAAKAQVVGWPPVRAYRK-----NAMKSCKYVKVAVDGAPYLRKVDLE 130

Query: 132 IFNGYHQLFNALHHLFTSFPISC-DYLEGGSNLNPAVKRADEYLPTYEDKDGDWMLVGDV 188
           ++N Y QL NAL  +F+ F  +  +YL   + +   V    EY+PTYEDKDGDWM++GDV
Sbjct: 131 MYNSYQQLLNALQDMFSCFSFTIRNYLNERTIMEQEVNNGVEYVPTYEDKDGDWMMLGDV 188

[Close]

BLAST of Cucsa.235820.2 vs. TrEMBL
Match: W9SFI1_9ROSA (Auxin-responsive protein OS=Morus notabilis GN=L484_019459 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.7e-35
Identity = 87/189 (46.03%), Postives = 116/189 (61.38%), Query Frame = 1


Query: 3   SSETLPESPQSDLTQINFDETELTLGLPGAEFRPTT-DHKSNAKRCFHDTVDADVGSSTS 62
           S E    S +S+   +NF+ET+LTLGLPG    PT    KS  KR + DT+D +V SS+ 
Sbjct: 2   SKENGKHSLESNAAGLNFEETKLTLGLPGKTRGPTEIGAKSGTKRGYSDTIDLNVESSSQ 61

Query: 63  KPRDSLDD----EPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAP 122
           K  +S D+    +    S     K  V+GWPPVR+ RK  ++     + K++KVG DGAP
Sbjct: 62  KQSESDDNGVVIDEASASKPPPAKAQVVGWPPVRASRKNVMK-----SCKFIKVGLDGAP 121

Query: 123 YLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGD 182
           YLRK+DL+++N Y+QL  AL  +F+S     +YL     ++P      EYLPTYEDKDGD
Sbjct: 122 YLRKVDLEMYNSYNQLLTALQDMFSSCLTIRNYLNERKLMDPV--NGMEYLPTYEDKDGD 181

Query: 183 WMLVGDVPW 187
           WMLVGDVPW
Sbjct: 182 WMLVGDVPW 183

[Close]

BLAST of Cucsa.235820.2 vs. TrEMBL
Match: L0ASX8_POPTO (Auxin-responsive protein OS=Populus tomentosa PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.3e-34
Identity = 81/183 (44.26%), Postives = 111/183 (60.66%), Query Frame = 1


Query: 12  QSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSSTSKPRD------ 71
           +SD   ++F ETELTLGLPG         K++ KR F +TVD ++G S++   D      
Sbjct: 11  ESDAANVSFKETELTLGLPGESRGLALIEKTSGKRGFLETVDLNLGRSSNVDSDHHKYSG 70

Query: 72  SLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLRKLDLQ 131
             + + P+ +     K  V+GWPPVR+YRK     N+    KYVKV  DGAPYLRK+DL+
Sbjct: 71  ESETDVPNTAKPPAAKAQVVGWPPVRAYRK-----NAMKGCKYVKVAVDGAPYLRKVDLE 130

Query: 132 IFNGYHQLFNALHHLFTSFPISC-DYLEGGSNLNPAVKRADEYLPTYEDKDGDWMLVGDV 188
           ++N Y QL NAL  +F+ F  +  +YL   + +   V    EY+PTY DKDGDWM++GDV
Sbjct: 131 MYNSYQQLLNALQDMFSCFSFTIRNYLNERTIMEQEVNNGVEYVPTYGDKDGDWMMLGDV 188

[Close]

BLAST of Cucsa.235820.2 vs. TrEMBL
Match: M0ZRZ9_SOLTU (Auxin-responsive protein OS=Solanum tuberosum GN=PGSC0003DMG402002635 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-33
Identity = 87/179 (48.60%), Postives = 113/179 (63.13%), Query Frame = 1


Query: 12  QSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSSTSKPRDSLDDEP 71
           ++D + +NF+ETELTLGLPG   +      S  KR   D ++  +GSSTS  R   DD  
Sbjct: 14  ETDNSGLNFNETELTLGLPGESRKQI----SGTKRGISDGMELILGSSTSGERRREDDHS 73

Query: 72  PHG-SSGNEE--KRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLRKLDLQIFN 131
            +  S+GN+   K  V+GWPPVRSYRK  IE       KYVKV  DGAPYLRK+DL++++
Sbjct: 74  KNEISTGNKPPAKAQVIGWPPVRSYRKNVIEK-----CKYVKVAVDGAPYLRKVDLEMYD 133

Query: 132 GYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDWMLVGDVPWK 188
            Y +L NAL ++FT   I C+       ++  +    EY+PTYEDKDGDWMLVGDVPWK
Sbjct: 134 SYQKLLNALENMFTCLTI-CNSQSESKLMD--LTNGVEYVPTYEDKDGDWMLVGDVPWK 180

[Close]

BLAST of Cucsa.235820.2 vs. TAIR10
Match: AT3G04730.1 (AT3G04730.1 indoleacetic acid-induced protein 16)

HSP 1 Score: 128.6 bits (322), Expect = 3.9e-30
Identity = 84/210 (40.00%), Postives = 105/210 (50.00%), Query Frame = 1


Query: 18  INFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVG-SSTSKPRDSLDD------- 77
           INF+ TEL LGLPG         K+N KR F +TVD  +  SST+    S  D       
Sbjct: 2   INFEATELRLGLPGGNHGGEMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKVDLENMKEK 61

Query: 78  --EPPHGSSGNEEKRAVMGWPPVRSYRKR-------------------------TIEMNS 137
             +PP        K  V+GWPPVRS+RK                          T   ++
Sbjct: 62  VVKPP-------AKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASA 121

Query: 138 TTTTKYVKVGADGAPYLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVK 188
             T  YVKV  DGAPYLRK+DL+++  Y  L NAL  +F+SF I     +G  +     K
Sbjct: 122 CATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESK 181

[Close]

BLAST of Cucsa.235820.2 vs. TAIR10
Match: AT1G04250.1 (AT1G04250.1 AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-27
Identity = 79/201 (39.30%), Postives = 100/201 (49.75%), Query Frame = 1


Query: 17  QINFDETELTLGLPGAE-----------FRPTTDHKSNAKR--------CFHDTVDADVG 76
           ++N  ETEL LGLPG +           F  T D K N             HD V  D  
Sbjct: 6   ELNLRETELCLGLPGGDTVAPVTGNKRGFSETVDLKLNLNNEPANKEGSTTHDVVTFDSK 65

Query: 77  SSTSKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTI-----EMNSTTTTKYVKVG 136
             ++ P+D    +PP        K  V+GWPPVRSYRK  +              +VKV 
Sbjct: 66  EKSACPKDPA--KPP-------AKAQVVGWPPVRSYRKNVMVSCQKSSGGPEAAAFVKVS 125

Query: 137 ADGAPYLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGG-------SNLNPAVKRAD 187
            DGAPYLRK+DL+++  Y +L NAL ++F+SF +     E G         L   V   D
Sbjct: 126 MDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWD 185

[Close]

BLAST of Cucsa.235820.2 vs. TAIR10
Match: AT1G04240.1 (AT1G04240.1 AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-27
Identity = 71/180 (39.44%), Postives = 95/180 (52.78%), Query Frame = 1


Query: 18  INFDETELTLGLPGAEFRPTTDHK-----SNAKRCFHDTVDADVGSSTSKPRDSLDDEPP 77
           +N  ETEL LGLPG +       +     +N KR      + ++ SS+ K   S    PP
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETS----PP 64

Query: 78  HGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTK-----YVKVGADGAPYLRKLDLQIF 137
                   K  ++GWPPVRSYRK  I+     +       YVKV  DGAPYLRK+DL  +
Sbjct: 65  R-------KAQIVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCY 124

Query: 138 NGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDWMLVGDVPWK 188
            GY +L  AL  +F  F +  +Y E          +  +++PTYEDKDGDWML+GDVPW+
Sbjct: 125 KGYSELLKALEVMF-KFSVG-EYFERDGY------KGSDFVPTYEDKDGDWMLIGDVPWE 165

[Close]

BLAST of Cucsa.235820.2 vs. TAIR10
Match: AT4G14550.1 (AT4G14550.1 indole-3-acetic acid inducible 14)

HSP 1 Score: 118.2 bits (295), Expect = 5.3e-27
Identity = 76/198 (38.38%), Postives = 102/198 (51.52%), Query Frame = 1


Query: 18  INFDETELTLGLPGAEFRPTTDHKSNA--KRCFHDTVDADVGSSTSK-----------PR 77
           +N  ETEL LGLPG      +  KS    KR F +TVD  +   ++K           P+
Sbjct: 1   MNLKETELCLGLPGGTETVESPAKSGVGNKRGFSETVDLKLNLQSNKQGHVDLNTNGAPK 60

Query: 78  DSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTT-----------TTKYVKVGA 137
           +    + P   S    K  V+GWPPVR+YRK  +    +            T  +VKV  
Sbjct: 61  EKTFLKDP---SKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSM 120

Query: 138 DGAPYLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRAD-----EYL 187
           DGAPYLRK+DL+++  Y  L +AL  +F+SF +     +G  +     K  D     EY+
Sbjct: 121 DGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKVMDLLNSSEYV 180

[Close]

BLAST of Cucsa.235820.2 vs. TAIR10
Match: AT5G43700.1 (AT5G43700.1 AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 115.9 bits (289), Expect = 2.6e-26
Identity = 70/173 (40.46%), Postives = 97/173 (56.07%), Query Frame = 1


Query: 18  INFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSSTSKPRDSLDDEPPHGSSG 77
           +N   TEL LGLPG E    +  KSN KR   +  + ++  ST K   +    PP     
Sbjct: 11  VNLKATELRLGLPGTE-ETVSCGKSN-KRVLPEATEKEI-ESTGKTETA---SPP----- 70

Query: 78  NEEKRAVMGWPPVRSYRKRTIEMNSTTTT---KYVKVGADGAPYLRKLDLQIFNGYHQLF 137
              K  ++GWPPVRSYRK  ++   + +     YVKV  DGAPYLRK+DL ++  Y +L 
Sbjct: 71  ---KAQIVGWPPVRSYRKNNVQTKKSESEGQGNYVKVSMDGAPYLRKIDLTMYKQYPELM 130

Query: 138 NALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDWMLVGDVPWK 188
            +L ++F  F +  +Y E          +  +++PTYEDKDGDWMLVGDVPW+
Sbjct: 131 KSLENMF-KFSVG-EYFEREGY------KGSDFVPTYEDKDGDWMLVGDVPWE 161

[Close]

BLAST of Cucsa.235820.2 vs. NCBI nr
Match: gi|449464280|ref|XP_004149857.1| (PREDICTED: auxin-induced protein AUX22-like [Cucumis sativus])

HSP 1 Score: 394.0 bits (1011), Expect = 1.4e-106
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1


Query: 1   MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST 60
           MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST
Sbjct: 1   MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST 60

Query: 61  SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR 120
           SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR
Sbjct: 61  SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR 120

Query: 121 KLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDWML 180
           KLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDWML
Sbjct: 121 KLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDWML 180

Query: 181 VGDVPWK 188
           VGDVPWK
Sbjct: 181 VGDVPWK 187

[Close]

BLAST of Cucsa.235820.2 vs. NCBI nr
Match: gi|659126766|ref|XP_008463353.1| (PREDICTED: auxin-responsive protein IAA16-like [Cucumis melo])

HSP 1 Score: 347.1 bits (889), Expect = 2.0e-92
Identity = 170/189 (89.95%), Postives = 177/189 (93.65%), Query Frame = 1


Query: 1   MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDAD-VGSS 60
           MSSSET+P+SP+SD TQINFDETELTLGLPGAEFRPTT HKSNAKRCFHDTVDA  VGSS
Sbjct: 1   MSSSETVPDSPESDFTQINFDETELTLGLPGAEFRPTTHHKSNAKRCFHDTVDAGCVGSS 60

Query: 61  TSKPRD-SLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPY 120
           TSKPRD SLDDEP HGSSGN EKRAVMGWPPVRSYRK+TIEMNST+ TKYVKVGADGAPY
Sbjct: 61  TSKPRDISLDDEPQHGSSGNGEKRAVMGWPPVRSYRKKTIEMNSTSATKYVKVGADGAPY 120

Query: 121 LRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDW 180
           LRKLDLQIFNGY QLF+A HHLFTSFPISCDYLE G+NLNP VKRADEYLPTYEDKDGDW
Sbjct: 121 LRKLDLQIFNGYQQLFDAFHHLFTSFPISCDYLEEGNNLNP-VKRADEYLPTYEDKDGDW 180

Query: 181 MLVGDVPWK 188
           MLVGDVPWK
Sbjct: 181 MLVGDVPWK 188

[Close]

BLAST of Cucsa.235820.2 vs. NCBI nr
Match: gi|700210287|gb|KGN65383.1| (hypothetical protein Csa_1G397130 [Cucumis sativus])

HSP 1 Score: 319.3 bits (817), Expect = 4.5e-84
Identity = 159/187 (85.03%), Postives = 159/187 (85.03%), Query Frame = 1


Query: 1   MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST 60
           MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST
Sbjct: 1   MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST 60

Query: 61  SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR 120
           SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR
Sbjct: 61  SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR 120

Query: 121 KLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDWML 180
                                       DYLEGGSNLNPAVKRADEYLPTYEDKDGDWML
Sbjct: 121 ----------------------------DYLEGGSNLNPAVKRADEYLPTYEDKDGDWML 159

Query: 181 VGDVPWK 188
           VGDVPWK
Sbjct: 181 VGDVPWK 159

[Close]

BLAST of Cucsa.235820.2 vs. NCBI nr
Match: gi|719994593|ref|XP_010254225.1| (PREDICTED: auxin-responsive protein IAA1-like [Nelumbo nucifera])

HSP 1 Score: 164.9 bits (416), Expect = 1.4e-37
Identity = 92/189 (48.68%), Postives = 118/189 (62.43%), Query Frame = 1


Query: 1   MSSSETLPESPQSDLTQINFDETELTLGLPG-AEFRPTTDHKSNAKRCFHDTVDADVGS- 60
           M  +ET    P+SD T +NF ETELTLGLPG A  +  T  K+N+KR F +TVD ++GS 
Sbjct: 1   MMLTETALNLPESDATGLNFKETELTLGLPGEARSQTETIAKNNSKRGFSETVDLNLGSC 60

Query: 61  STSKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPY 120
           S ++  D  + E    S     K  V+GWPPVRS+RK  ++     +  YVKV  DGAPY
Sbjct: 61  SKNRIEDQGESEVSGASKPPSSKAQVVGWPPVRSFRKNVLK-----SCTYVKVAVDGAPY 120

Query: 121 LRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDW 180
           LRK+DL+ +  Y QL +AL  +FT F I  + L     ++P      EY+PTYEDKDGDW
Sbjct: 121 LRKVDLETYGSYQQLLSALEEMFTCFTIR-NVLNESKLMDPV--NGTEYVPTYEDKDGDW 180

Query: 181 MLVGDVPWK 188
           MLVGDVPWK
Sbjct: 181 MLVGDVPWK 181

[Close]

BLAST of Cucsa.235820.2 vs. NCBI nr
Match: gi|719980686|ref|XP_010249884.1| (PREDICTED: auxin-responsive protein IAA1 [Nelumbo nucifera])

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 89/192 (46.35%), Postives = 115/192 (59.90%), Query Frame = 1


Query: 3   SSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSSTSK 62
           S ET    P+S++T +NF ETELTLGLPG           N+KR F +TVD ++GSS+S 
Sbjct: 2   SPETARNPPESEVTGLNFKETELTLGLPGESRTQAEIVSKNSKRGFSETVDLNLGSSSSS 61

Query: 63  P-------RDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADG 122
                    +  + E P        K  V+GWPPVRS+RK     N+  +  YVKV  DG
Sbjct: 62  ETRGRSQVEEQGESEAPCAGKPPASKAQVVGWPPVRSFRK-----NALKSCTYVKVAVDG 121

Query: 123 APYLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKD 182
           APYLRK+DL+ ++ Y QL +AL ++FT F I  + L     ++P      EY+PTYEDKD
Sbjct: 122 APYLRKVDLETYSSYQQLLSALENMFTCFTIR-NVLNERKLMDPV--NGTEYVPTYEDKD 181

Query: 183 GDWMLVGDVPWK 188
           GDWMLVGDVPWK
Sbjct: 182 GDWMLVGDVPWK 185

The following BLAST results are available for this feature:

BLAST of Cucsa.235820.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IAA1_ORYSJ	7.0e-29	42.86	Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1	[more]
IAA16_ARATH	7.0e-29	40.00	Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1	[more]
IAA23_ORYSJ	2.9e-27	40.41	Auxin-responsive protein IAA23 OS=Oryza sativa subsp. japonica GN=IAA23 PE=2 SV=...	[more]
IAA15_ORYSJ	2.9e-27	40.70	Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=...	[more]
IAA17_ARATH	2.5e-26	39.30	Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2	[more]

BLAST of Cucsa.235820.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUB1_CUCSA	3.1e-84	85.03	Auxin-responsive protein OS=Cucumis sativus GN=Csa_1G397130 PE=3 SV=1	[more]
A9PE61_POPTR	1.6e-35	44.81	Auxin-responsive protein OS=Populus trichocarpa GN=POPTR_0001s17770g PE=2 SV=1	[more]
W9SFI1_9ROSA	7.7e-35	46.03	Auxin-responsive protein OS=Morus notabilis GN=L484_019459 PE=3 SV=1	[more]
L0ASX8_POPTO	2.3e-34	44.26	Auxin-responsive protein OS=Populus tomentosa PE=3 SV=1	[more]
M0ZRZ9_SOLTU	1.5e-33	48.60	Auxin-responsive protein OS=Solanum tuberosum GN=PGSC0003DMG402002635 PE=3 SV=1	[more]

BLAST of Cucsa.235820.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04730.1	3.9e-30	40.00	indoleacetic acid-induced protein 16	[more]
AT1G04250.1	1.4e-27	39.30	AUX/IAA transcriptional regulator family protein	[more]
AT1G04240.1	1.8e-27	39.44	AUX/IAA transcriptional regulator family protein	[more]
AT4G14550.1	5.3e-27	38.38	indole-3-acetic acid inducible 14	[more]
AT5G43700.1	2.6e-26	40.46	AUX/IAA transcriptional regulator family protein	[more]

BLAST of Cucsa.235820.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464280\|ref\|XP_004149857.1\|	1.4e-106	100.00	PREDICTED: auxin-induced protein AUX22-like [Cucumis sativus]	[more]
gi\|659126766\|ref\|XP_008463353.1\|	2.0e-92	89.95	PREDICTED: auxin-responsive protein IAA16-like [Cucumis melo]	[more]
gi\|700210287\|gb\|KGN65383.1\|	4.5e-84	85.03	hypothetical protein Csa_1G397130 [Cucumis sativus]	[more]
gi\|719994593\|ref\|XP_010254225.1\|	1.4e-37	48.68	PREDICTED: auxin-responsive protein IAA1-like [Nelumbo nucifera]	[more]
gi\|719980686\|ref\|XP_010249884.1\|	1.2e-36	46.35	PREDICTED: auxin-responsive protein IAA1 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000270	PB1_dom
IPR003311	AUX_IAA

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009734	auxin-activated signaling pathway
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.235820	Cucsa.235820	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.235820.2	Cucsa.235820.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.235820.2.five_prime_UTR.1	Cucsa.235820.2.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.235820.2.CDS.1	Cucsa.235820.2.CDS.1	CDS
Cucsa.235820.2.CDS.2	Cucsa.235820.2.CDS.2	CDS
Cucsa.235820.2.CDS.3	Cucsa.235820.2.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.235820.2.three_prime_UTR.1	Cucsa.235820.2.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000270	PB1 domain	PROFILE	PS51745	PB1	coord: 106..187 score: 1
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	FAMILY NOT NAMED	coord: 3..187 score: 1.6
None	No IPR available	PANTHER	PTHR31734:SF34	AUXIN-RESPONSIVE PROTEIN IAA15	coord: 3..187 score: 1.6
None	No IPR available	unknown	SSF54277	CAD & PB1 domains	coord: 101..187 score: 2.16