Cucsa.235820.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.235820.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Auxin-responsive protein
Location	scaffold02012 : 579827 .. 581501 (+)
Sequence length	1029

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTTCTTATTACTTTATCATCTACTTCTAACCTTCTATATATATGTGTGTGTGTATATATATATATAATATGAAATGAAAACCACACACCAAACAATTTTAATTCATTTCAAATCAAACCATTTTCTCTCAGGCAGAGCAACATATTATATGTTATGTCGTCCTCCGAGACACTTCCGGAGTCGCCCCAATCTGATTTGACTCAAATCAATTTCGATGAAACTGAGCTCACATTGGGACTTCCCGGAGCCGAGTTCCGGCCAACAACTGATCATAAATCCAACGCCAAACGTTGTTTCCATGACACTGTTGATGCCGATGTCGGGAGCTCGACAAGCAAACCGCGTGACAGTCTTGATGATGAGCCACCCCATGGCTCTTCTGGAAATGGTACGTTTCGATATGTATACGGCTCTGATTGAGTATGGCAATTAAAATTTTTATGTATCTTTGGTTGTTCATATATTGAAAGGTAGATTATTAATATATATGAATATATTATAGAGGAAAAGCGGGCAGTGATGGGTTGGCCACCGGTGAGATCATACAGAAAAAGGACAATAGAAATGAACAGCACAACTACTACTAAGTACGTTAAAGTTGGGGCTGATGGTGCGCCATATCTGCGTAAGCTTGACCTTCAGATCTTCAATGGCTACCATCAACTATTTAACGCTTTACACCATTTGTTTACCTCCTTCCCTATTTCTTGTGAGTACTCACAATAATACATAATTCCGATCTCTTTCTTTATTATTATTATAAATCTTTTCTTAACTTCAACAATAAATATGATACGTCTCTAACTCGGTACTAACTAGTCAGATGTGTCTTTGTCTATTAAGCTATGTGTATATAATTAATAGTGTGACTGCATTTAACAACATCATTGTAGTTAACTTAACTAGATCAAGAATATATCGAGTAGTAAAATTCATCCAACTCTAATTTAAGTTATATTTTATAAGATTTTGAATTTAAATTATAATTTAACGCACGATAAATTATATCATAGGTGATTACTTAGAAGGAGGAAGCAATTTGAACCCAGCTGTGAAAAGAGCAGATGAATACTTACCAACTTATGAAGATAAAGATGGAGATTGGATGTTAGTAGGAGATGTCCCTTGGAAGTAAGTTTAATTATTATTACCATAACTTTCAATTTCATCTTATTTAACTAATTATTATTAATAATTAACCTTCTTCAATTTGCCTCAGCTTCTAATTAATTACAAACTTTCAAAATGTGCAGATTATTCATTGAATCATGCAAACGTATtCGTTTGATGAAAGGTTCAGATGCCATTGGCACCCGTAAGTCTTATTTTGTTTTAGGGCTTGAGATTCTTTTAAAGATAACTTCCCAAGTGGGATTTTGTTAATTAATTTATGAGTTTGTTGTTCACTTAATTATGTGCAGCTTCAAGAACACCATAAAGAAAAGGAAAGGGGAGGAAGGGAGAGAGAGGTTTTGGATGTGGGCAGCTTTACTTTTTGAATTTGTTCTAAGTATTGAATGAATATAATATGCCCCTTTTGATGTGATTAGGCTTTTGTTAATTTTGTATAATAAAAAaGTAATATTTACCTAACTGCAGTTTGTTGTTGTTGTTGTACAGTTGTTAACATGGCTTAAAGTGCTCAAATATTAATCACTTGTTTATAAGTCCT

mRNA sequence

CTCTTTCTTATTACTTTATCATCTACTTCTAACCTTCtatatatatgtgtgtgtgtatatatatatataATATGAAATGAAAACCACACACCAAACAATTTTAATTCATTTCAAATCAAACCATTTTCTCTCAGGCAGAGCAACATATTATATGTTATGTCGTCCTCCGAGACACTTCCGGAGTCGCCCCAATCTGATTTGACTCAAATCAATTTCGATGAAACTGAGCTCACATTGGGACTTCCCGGAGCCGAGTTCCGGCCAACAACTGATCATAAATCCAACGCCAAACGTTGTTTCCATGACACTGTTGATGCCGATGTCGGGAGCTCGACAAGCAAACCGCGTGACAGTCTTGATGATGAGCCACCCCATGGCTCTTCTGGAAATGAGGAAAAGCGGGCAGTGATGGGTTGGCCACCGGTGAGATCATACAGAAAAAGGACAATAGAAATGAACAGCACAACTACTACTAAGTACGTTAAAGTTGGGGCTGATGGTGCGCCATATCTGCGTAAGCTTGACCTTCAGATCTTCAATGGCTACCATCAACTATTTAACGCTTTACACCATTTGTTTACCTCCTTCCCTATTTCTTGTGATTACTTAGAAGGAGGAAGCAATTTGAACCCAGCTGTGAAAAGAGCAGATGAATACTTACCAACTTATGAAGATAAAGATGGAGATTGGATGTTAGTAGGAGATGTCCCTTGGAAATTATTCATTGAATCATGCAAACGTATTCGTTTGATGAAAGGTTCAGATGCCATTGGCACCCCTTCAAGAACACCATAAAGAAAAGGAAAGGGGAGGAAGGGAGAGAGAGGTTTTGGATGTGGGCAGCTTTACTTTTTGAATTTGTTCTAAGTATTGAATGAATATAATATGCCCCTTTTGATGTGATTAGGCTTTTGTTAATTTTGTATAATAAAAAAGTAATATTTACCTAACTGCAGTTTGTTGTTGTTGTTGTACAGTTGTTAACATGGCTTAAAGTGCTCAAATATTAATCACTTGTTTATAAGTCCT

Coding sequence (CDS)

ATGTCGTCCTCCGAGACACTTCCGGAGTCGCCCCAATCTGATTTGACTCAAATCAATTTCGATGAAACTGAGCTCACATTGGGACTTCCCGGAGCCGAGTTCCGGCCAACAACTGATCATAAATCCAACGCCAAACGTTGTTTCCATGACACTGTTGATGCCGATGTCGGGAGCTCGACAAGCAAACCGCGTGACAGTCTTGATGATGAGCCACCCCATGGCTCTTCTGGAAATGAGGAAAAGCGGGCAGTGATGGGTTGGCCACCGGTGAGATCATACAGAAAAAGGACAATAGAAATGAACAGCACAACTACTACTAAGTACGTTAAAGTTGGGGCTGATGGTGCGCCATATCTGCGTAAGCTTGACCTTCAGATCTTCAATGGCTACCATCAACTATTTAACGCTTTACACCATTTGTTTACCTCCTTCCCTATTTCTTGTGATTACTTAGAAGGAGGAAGCAATTTGAACCCAGCTGTGAAAAGAGCAGATGAATACTTACCAACTTATGAAGATAAAGATGGAGATTGGATGTTAGTAGGAGATGTCCCTTGGAAATTATTCATTGAATCATGCAAACGTATtCGTTTGATGAAAGGTTCAGATGCCATTGGCACCCCTTCAAGAACACCATAA

Protein sequence

MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSSTSKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDWMLVGDVPWKLFIESCKRIRLMKGSDAIGTPSRTP*

Homology

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BLAST of Cucsa.235820.1 vs. Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.1e-38
Identity = 99/233 (42.49%), Postives = 125/233 (53.65%), Query Frame = 1


Query: 18  INFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVG-SSTSKPRDSLDD------- 77
           INF+ TEL LGLPG         K+N KR F +TVD  +  SST+    S  D       
Sbjct: 2   INFEATELRLGLPGGNHGGEMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKVDLENMKEK 61

Query: 78  --EPPHGSSGNEEKRAVMGWPPVRSYRKR-------------------------TIEMNS 137
             +PP        K  V+GWPPVRS+RK                          T   ++
Sbjct: 62  VVKPP-------AKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASA 121

Query: 138 TTTTKYVKVGADGAPYLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVK 197
             T  YVKV  DGAPYLRK+DL+++  Y  L NAL  +F+SF I     +G  +     K
Sbjct: 122 CATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESK 181

Query: 198 RAD-----EYLPTYEDKDGDWMLVGDVPWKLFIESCKRIRLMKGSDAIGTPSR 211
             D     +Y+PTYEDKDGDWMLVGDVPW++F++SCKRIR+MKGS+AIG   R
Sbjct: 182 LIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPR 227

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BLAST of Cucsa.235820.1 vs. Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-36
Identity = 92/212 (43.40%), Postives = 120/212 (56.60%), Query Frame = 1


Query: 3   SSETLPESPQSDLTQ-INFDETELTLGLPG---AEFRPTTDHKSNAKRCFHDTVDADVGS 62
           S ET   S +S     ++F++T LTL LPG   A   P  D K ++      + DA   +
Sbjct: 2   SVETERSSTESSAASGLDFEDTALTLRLPGSLAAAAAPDPDRKRSSP----SSSDAADAA 61

Query: 63  STSKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPY 122
             S P  +  D PP        K  V+GWPPVRS+RK  +        K+VKV  DGAPY
Sbjct: 62  DNSSPLAAAADAPP------APKARVVGWPPVRSFRKNAL------AAKFVKVAVDGAPY 121

Query: 123 LRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDW 182
           LRK+DL+ ++GY QL  AL   F S      + +    L  AV    EY+PTYEDKDGDW
Sbjct: 122 LRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFADDERKLVDAVN-GTEYVPTYEDKDGDW 181

Query: 183 MLVGDVPWKLFIESCKRIRLMKGSDAIGTPSR 211
           MLVGDVPWK+F+E+C+R+RLMK S+A+    R
Sbjct: 182 MLVGDVPWKMFVETCQRLRLMKSSEAVNLAPR 196

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BLAST of Cucsa.235820.1 vs. Swiss-Prot
Match: IAA23_ORYSJ (Auxin-responsive protein IAA23 OS=Oryza sativa subsp. japonica GN=IAA23 PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.9e-36
Identity = 92/216 (42.59%), Postives = 117/216 (54.17%), Query Frame = 1


Query: 1   MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST 60
           MS+S     SP   ++ +++D+T LTL LPG+    ++      KR  H           
Sbjct: 1   MSTSSGADSSPP--VSGLDYDDTALTLALPGSSSSSSSTADPERKRAAH----------- 60

Query: 61  SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR 120
               D  D +PP        K   +GWPPVR+YR+  +  +S    K VKV  DGAPYLR
Sbjct: 61  ---ADHADAKPP------SPKARAVGWPPVRAYRRNALREDSARA-KLVKVAVDGAPYLR 120

Query: 121 KLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLN-PAVKRAD-----EYLPTYEDK 180
           K+DL    GY  L  ALH +F S    C  + GG   +    K  D     EY+PTYEDK
Sbjct: 121 KVDLAAHAGYAPLLRALHGMFAS----CLAVRGGGGGDGEGTKLVDLVTGAEYVPTYEDK 180

Query: 181 DGDWMLVGDVPWKLFIESCKRIRLMKGSDAIGTPSR 211
           DGDWMLVGDVPWK+F+ESCKRIRLMK S+A+    R
Sbjct: 181 DGDWMLVGDVPWKMFVESCKRIRLMKSSEAVNLSPR 189

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BLAST of Cucsa.235820.1 vs. Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 5.1e-36
Identity = 93/224 (41.52%), Postives = 121/224 (54.02%), Query Frame = 1


Query: 17  QINFDETELTLGLPGAE-----------FRPTTDHKSNAKR--------CFHDTVDADVG 76
           ++N  ETEL LGLPG +           F  T D K N             HD V  D  
Sbjct: 6   ELNLRETELCLGLPGGDTVAPVTGNKRGFSETVDLKLNLNNEPANKEGSTTHDVVTFDSK 65

Query: 77  SSTSKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTI-----EMNSTTTTKYVKVG 136
             ++ P+D    +PP        K  V+GWPPVRSYRK  +              +VKV 
Sbjct: 66  EKSACPKDPA--KPP-------AKAQVVGWPPVRSYRKNVMVSCQKSSGGPEAAAFVKVS 125

Query: 137 ADGAPYLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGS-NLNPAVKRAD-----E 196
            DGAPYLRK+DL+++  Y +L NAL ++F+SF +     E G  +     K  D     +
Sbjct: 126 MDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWD 185

Query: 197 YLPTYEDKDGDWMLVGDVPWKLFIESCKRIRLMKGSDAIGTPSR 211
           Y+P+YEDKDGDWMLVGDVPW +F+++CKR+RLMKGSDAIG   R
Sbjct: 186 YVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPR 220

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BLAST of Cucsa.235820.1 vs. Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-35
Identity = 91/222 (40.99%), Postives = 122/222 (54.95%), Query Frame = 1


Query: 18  INFDETELTLGLPGAEFRPTTDHKSNA--KRCFHDTVDADVGSSTSK-----------PR 77
           +N  ETEL LGLPG      +  KS    KR F +TVD  +   ++K           P+
Sbjct: 1   MNLKETELCLGLPGGTETVESPAKSGVGNKRGFSETVDLKLNLQSNKQGHVDLNTNGAPK 60

Query: 78  DSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTT-----------TTKYVKVGA 137
           +    + P   S    K  V+GWPPVR+YRK  +    +            T  +VKV  
Sbjct: 61  EKTFLKDP---SKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSM 120

Query: 138 DGAPYLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRAD-----EYL 197
           DGAPYLRK+DL+++  Y  L +AL  +F+SF +     +G  +     K  D     EY+
Sbjct: 121 DGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKVMDLLNSSEYV 180

Query: 198 PTYEDKDGDWMLVGDVPWKLFIESCKRIRLMKGSDAIGTPSR 211
           P+YEDKDGDWMLVGDVPW +F+ESCKR+R+MKGS+AIG   R
Sbjct: 181 PSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPR 219

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BLAST of Cucsa.235820.1 vs. TrEMBL
Match: A0A0A0LUB1_CUCSA (Auxin-responsive protein OS=Cucumis sativus GN=Csa_1G397130 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 5.1e-99
Identity = 184/212 (86.79%), Postives = 184/212 (86.79%), Query Frame = 1


Query: 1   MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST 60
           MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST
Sbjct: 1   MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST 60

Query: 61  SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR 120
           SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR
Sbjct: 61  SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR 120

Query: 121 KLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDWML 180
                                       DYLEGGSNLNPAVKRADEYLPTYEDKDGDWML
Sbjct: 121 ----------------------------DYLEGGSNLNPAVKRADEYLPTYEDKDGDWML 180

Query: 181 VGDVPWKLFIESCKRIRLMKGSDAIGTPSRTP 213
           VGDVPWKLFIESCKRIRLMKGSDAIGTPSRTP
Sbjct: 181 VGDVPWKLFIESCKRIRLMKGSDAIGTPSRTP 184

[Close]

BLAST of Cucsa.235820.1 vs. TrEMBL
Match: A9PE61_POPTR (Auxin-responsive protein OS=Populus trichocarpa GN=POPTR_0001s17770g PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.1e-45
Identity = 98/208 (47.12%), Postives = 133/208 (63.94%), Query Frame = 1


Query: 12  QSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSSTSKPRD------ 71
           +SD   ++F ETELTLGLPG         K++ KR F +TVD ++G S++   D      
Sbjct: 11  ESDAANVSFKETELTLGLPGESRGLALIEKTSGKRGFLETVDLNLGRSSNVDSDHNKYSG 70

Query: 72  SLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLRKLDLQ 131
             + + P+ +     K  V+GWPPVR+YRK     N+  + KYVKV  DGAPYLRK+DL+
Sbjct: 71  ESETDVPNTAKPPAAKAQVVGWPPVRAYRK-----NAMKSCKYVKVAVDGAPYLRKVDLE 130

Query: 132 IFNGYHQLFNALHHLFTSFPISC-DYLEGGSNLNPAVKRADEYLPTYEDKDGDWMLVGDV 191
           ++N Y QL NAL  +F+ F  +  +YL   + +   V    EY+PTYEDKDGDWM++GDV
Sbjct: 131 MYNSYQQLLNALQDMFSCFSFTIRNYLNERTIMEQEVNNGVEYVPTYEDKDGDWMMLGDV 190

Query: 192 PWKLFIESCKRIRLMKGSDAIGTPSRTP 213
           PWK+F+ESCKR+RLMK S+A G   RTP
Sbjct: 191 PWKMFVESCKRLRLMKSSEATGFAPRTP 213

[Close]

BLAST of Cucsa.235820.1 vs. TrEMBL
Match: L0ASX8_POPTO (Auxin-responsive protein OS=Populus tomentosa PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.6e-44
Identity = 97/208 (46.63%), Postives = 131/208 (62.98%), Query Frame = 1


Query: 12  QSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSSTSKPRD------ 71
           +SD   ++F ETELTLGLPG         K++ KR F +TVD ++G S++   D      
Sbjct: 11  ESDAANVSFKETELTLGLPGESRGLALIEKTSGKRGFLETVDLNLGRSSNVDSDHHKYSG 70

Query: 72  SLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLRKLDLQ 131
             + + P+ +     K  V+GWPPVR+YRK     N+    KYVKV  DGAPYLRK+DL+
Sbjct: 71  ESETDVPNTAKPPAAKAQVVGWPPVRAYRK-----NAMKGCKYVKVAVDGAPYLRKVDLE 130

Query: 132 IFNGYHQLFNALHHLFTSFPISC-DYLEGGSNLNPAVKRADEYLPTYEDKDGDWMLVGDV 191
           ++N Y QL NAL  +F+ F  +  +YL   + +   V    EY+PTY DKDGDWM++GDV
Sbjct: 131 MYNSYQQLLNALQDMFSCFSFTIRNYLNERTIMEQEVNNGVEYVPTYGDKDGDWMMLGDV 190

Query: 192 PWKLFIESCKRIRLMKGSDAIGTPSRTP 213
           PWK+F+ESCKR+RLMK S+A G   RTP
Sbjct: 191 PWKMFVESCKRLRLMKSSEATGFAPRTP 213

[Close]

BLAST of Cucsa.235820.1 vs. TrEMBL
Match: D7TBU1_VITVI (Auxin-responsive protein OS=Vitis vinifera GN=VIT_11s0016g04490 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.9e-44
Identity = 105/215 (48.84%), Postives = 129/215 (60.00%), Query Frame = 1


Query: 4   SETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVG--SSTS 63
           S T  +SP S  T ++  +TELTLGLPG         KS +KR + DTVD      S  S
Sbjct: 3   SNTADQSPDSGTTGMSLKDTELTLGLPGEAQVVIVGGKSCSKRGYSDTVDFRFRCCSGES 62

Query: 64  KPRDSLDDEPPHGSSGN----EEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAP 123
             +    D P    SG     + K  V+GWPPVRS RK+ ++     + KYVKV  DGAP
Sbjct: 63  SAKAEKVDWPGKEISGPGKAPDSKAQVVGWPPVRSVRKKALK-----SCKYVKVAVDGAP 122

Query: 124 YLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGD 183
           YLRK+DL++   Y QL  AL  +F  F IS + LE    +NP      EY+PTYEDKDGD
Sbjct: 123 YLRKVDLEVHRSYQQLLMALETMFDCFTISSNDLEESKIMNPV--NGAEYVPTYEDKDGD 182

Query: 184 WMLVGDVPWKLFIESCKRIRLMKGSDAIGTPSRTP 213
           WMLVGDVPW +F+ESCKR+RLMK S+AIG   RTP
Sbjct: 183 WMLVGDVPWNMFVESCKRVRLMKSSEAIGLAPRTP 210

[Close]

BLAST of Cucsa.235820.1 vs. TrEMBL
Match: W9SFI1_9ROSA (Auxin-responsive protein OS=Morus notabilis GN=L484_019459 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.0e-43
Identity = 101/209 (48.33%), Postives = 134/209 (64.11%), Query Frame = 1


Query: 3   SSETLPESPQSDLTQINFDETELTLGLPGAEFRPTT-DHKSNAKRCFHDTVDADVGSSTS 62
           S E    S +S+   +NF+ET+LTLGLPG    PT    KS  KR + DT+D +V SS+ 
Sbjct: 2   SKENGKHSLESNAAGLNFEETKLTLGLPGKTRGPTEIGAKSGTKRGYSDTIDLNVESSSQ 61

Query: 63  KPRDSLDD----EPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAP 122
           K  +S D+    +    S     K  V+GWPPVR+ RK  ++     + K++KVG DGAP
Sbjct: 62  KQSESDDNGVVIDEASASKPPPAKAQVVGWPPVRASRKNVMK-----SCKFIKVGLDGAP 121

Query: 123 YLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGD 182
           YLRK+DL+++N Y+QL  AL  +F+S     +YL     ++P      EYLPTYEDKDGD
Sbjct: 122 YLRKVDLEMYNSYNQLLTALQDMFSSCLTIRNYLNERKLMDPV--NGMEYLPTYEDKDGD 181

Query: 183 WMLVGDVPWKLFIESCKRIRLMKGSDAIG 207
           WMLVGDVPW +F+ESCKR+RLMK S+AIG
Sbjct: 182 WMLVGDVPWTMFVESCKRLRLMKRSEAIG 203

[Close]

BLAST of Cucsa.235820.1 vs. TAIR10
Match: AT3G04730.1 (AT3G04730.1 indoleacetic acid-induced protein 16)

HSP 1 Score: 161.4 bits (407), Expect = 6.2e-40
Identity = 99/233 (42.49%), Postives = 125/233 (53.65%), Query Frame = 1


Query: 18  INFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVG-SSTSKPRDSLDD------- 77
           INF+ TEL LGLPG         K+N KR F +TVD  +  SST+    S  D       
Sbjct: 2   INFEATELRLGLPGGNHGGEMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKVDLENMKEK 61

Query: 78  --EPPHGSSGNEEKRAVMGWPPVRSYRKR-------------------------TIEMNS 137
             +PP        K  V+GWPPVRS+RK                          T   ++
Sbjct: 62  VVKPP-------AKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASA 121

Query: 138 TTTTKYVKVGADGAPYLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVK 197
             T  YVKV  DGAPYLRK+DL+++  Y  L NAL  +F+SF I     +G  +     K
Sbjct: 122 CATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESK 181

Query: 198 RAD-----EYLPTYEDKDGDWMLVGDVPWKLFIESCKRIRLMKGSDAIGTPSR 211
             D     +Y+PTYEDKDGDWMLVGDVPW++F++SCKRIR+MKGS+AIG   R
Sbjct: 182 LIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPR 227

[Close]

BLAST of Cucsa.235820.1 vs. TAIR10
Match: AT1G04250.1 (AT1G04250.1 AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 152.5 bits (384), Expect = 2.9e-37
Identity = 93/224 (41.52%), Postives = 121/224 (54.02%), Query Frame = 1


Query: 17  QINFDETELTLGLPGAE-----------FRPTTDHKSNAKR--------CFHDTVDADVG 76
           ++N  ETEL LGLPG +           F  T D K N             HD V  D  
Sbjct: 6   ELNLRETELCLGLPGGDTVAPVTGNKRGFSETVDLKLNLNNEPANKEGSTTHDVVTFDSK 65

Query: 77  SSTSKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTI-----EMNSTTTTKYVKVG 136
             ++ P+D    +PP        K  V+GWPPVRSYRK  +              +VKV 
Sbjct: 66  EKSACPKDPA--KPP-------AKAQVVGWPPVRSYRKNVMVSCQKSSGGPEAAAFVKVS 125

Query: 137 ADGAPYLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGS-NLNPAVKRAD-----E 196
            DGAPYLRK+DL+++  Y +L NAL ++F+SF +     E G  +     K  D     +
Sbjct: 126 MDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWD 185

Query: 197 YLPTYEDKDGDWMLVGDVPWKLFIESCKRIRLMKGSDAIGTPSR 211
           Y+P+YEDKDGDWMLVGDVPW +F+++CKR+RLMKGSDAIG   R
Sbjct: 186 YVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPR 220

[Close]

BLAST of Cucsa.235820.1 vs. TAIR10
Match: AT4G14550.1 (AT4G14550.1 indole-3-acetic acid inducible 14)

HSP 1 Score: 151.0 bits (380), Expect = 8.4e-37
Identity = 91/222 (40.99%), Postives = 122/222 (54.95%), Query Frame = 1


Query: 18  INFDETELTLGLPGAEFRPTTDHKSNA--KRCFHDTVDADVGSSTSK-----------PR 77
           +N  ETEL LGLPG      +  KS    KR F +TVD  +   ++K           P+
Sbjct: 1   MNLKETELCLGLPGGTETVESPAKSGVGNKRGFSETVDLKLNLQSNKQGHVDLNTNGAPK 60

Query: 78  DSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTT-----------TTKYVKVGA 137
           +    + P   S    K  V+GWPPVR+YRK  +    +            T  +VKV  
Sbjct: 61  EKTFLKDP---SKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSM 120

Query: 138 DGAPYLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRAD-----EYL 197
           DGAPYLRK+DL+++  Y  L +AL  +F+SF +     +G  +     K  D     EY+
Sbjct: 121 DGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKVMDLLNSSEYV 180

Query: 198 PTYEDKDGDWMLVGDVPWKLFIESCKRIRLMKGSDAIGTPSR 211
           P+YEDKDGDWMLVGDVPW +F+ESCKR+R+MKGS+AIG   R
Sbjct: 181 PSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPR 219

[Close]

BLAST of Cucsa.235820.1 vs. TAIR10
Match: AT3G23050.1 (AT3G23050.1 indole-3-acetic acid 7)

HSP 1 Score: 147.5 bits (371), Expect = 9.3e-36
Identity = 88/233 (37.77%), Postives = 126/233 (54.08%), Query Frame = 1


Query: 18  INFDETELTLGLPGAEFRPTTDHKS--NAKRCFHDTVD------------ADVGSSTSKP 77
           +N   TEL LGLPG      +  KS   +KR F +TVD             D+ + ++ P
Sbjct: 6   MNLKATELCLGLPGGAEAVESPAKSAVGSKRGFSETVDLMLNLQSNKEGSVDLKNVSAVP 65

Query: 78  RDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTT------------------ 137
           ++    + P   S    K  V+GWPPVR+YRK  +    T++                  
Sbjct: 66  KEKTTLKDP---SKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAA 125

Query: 138 -TKYVKVGADGAPYLRKLDLQIFNGYHQLFNALHHLFTSFPIS-------CDYLEGGSNL 197
               VKV  DGAPYLRK+DL+++  Y  L +AL  +F+SF +         D++     +
Sbjct: 126 GAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLM 185

Query: 198 NPAVKRADEYLPTYEDKDGDWMLVGDVPWKLFIESCKRIRLMKGSDAIGTPSR 211
           N  +  + EY+P+YEDKDGDWMLVGDVPW++F+ESCKR+R+MKGS+A+G   R
Sbjct: 186 N--LLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPR 233

[Close]

BLAST of Cucsa.235820.1 vs. TAIR10
Match: AT1G04240.1 (AT1G04240.1 AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 145.2 bits (365), Expect = 4.6e-35
Identity = 83/199 (41.71%), Postives = 112/199 (56.28%), Query Frame = 1


Query: 18  INFDETELTLGLPGAEFRPTTDHK-----SNAKRCFHDTVDADVGSSTSKPRDSLDDEPP 77
           +N  ETEL LGLPG +       +     +N KR      + ++ SS+ K   S    PP
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETS----PP 64

Query: 78  HGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTK-----YVKVGADGAPYLRKLDLQIF 137
                   K  ++GWPPVRSYRK  I+     +       YVKV  DGAPYLRK+DL  +
Sbjct: 65  R-------KAQIVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCY 124

Query: 138 NGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDWMLVGDVPWK 197
            GY +L  AL  +F  F +  +Y E          +  +++PTYEDKDGDWML+GDVPW+
Sbjct: 125 KGYSELLKALEVMF-KFSVG-EYFERDGY------KGSDFVPTYEDKDGDWMLIGDVPWE 184

Query: 198 LFIESCKRIRLMKGSDAIG 207
           +FI +CKR+R+MKGS+A G
Sbjct: 185 MFICTCKRLRIMKGSEAKG 184

[Close]

BLAST of Cucsa.235820.1 vs. NCBI nr
Match: gi|449464280|ref|XP_004149857.1| (PREDICTED: auxin-induced protein AUX22-like [Cucumis sativus])

HSP 1 Score: 443.4 bits (1139), Expect = 2.3e-121
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1


Query: 1   MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST 60
           MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST
Sbjct: 1   MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST 60

Query: 61  SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR 120
           SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR
Sbjct: 61  SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR 120

Query: 121 KLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDWML 180
           KLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDWML
Sbjct: 121 KLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDWML 180

Query: 181 VGDVPWKLFIESCKRIRLMKGSDAIGTPSRTP 213
           VGDVPWKLFIESCKRIRLMKGSDAIGTPSRTP
Sbjct: 181 VGDVPWKLFIESCKRIRLMKGSDAIGTPSRTP 212

[Close]

BLAST of Cucsa.235820.1 vs. NCBI nr
Match: gi|659126766|ref|XP_008463353.1| (PREDICTED: auxin-responsive protein IAA16-like [Cucumis melo])

HSP 1 Score: 393.3 bits (1009), Expect = 2.7e-106
Identity = 194/214 (90.65%), Postives = 201/214 (93.93%), Query Frame = 1


Query: 1   MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDAD-VGSS 60
           MSSSET+P+SP+SD TQINFDETELTLGLPGAEFRPTT HKSNAKRCFHDTVDA  VGSS
Sbjct: 1   MSSSETVPDSPESDFTQINFDETELTLGLPGAEFRPTTHHKSNAKRCFHDTVDAGCVGSS 60

Query: 61  TSKPRD-SLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPY 120
           TSKPRD SLDDEP HGSSGN EKRAVMGWPPVRSYRK+TIEMNST+ TKYVKVGADGAPY
Sbjct: 61  TSKPRDISLDDEPQHGSSGNGEKRAVMGWPPVRSYRKKTIEMNSTSATKYVKVGADGAPY 120

Query: 121 LRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDW 180
           LRKLDLQIFNGY QLF+A HHLFTSFPISCDYLE G+NLNP VKRADEYLPTYEDKDGDW
Sbjct: 121 LRKLDLQIFNGYQQLFDAFHHLFTSFPISCDYLEEGNNLNP-VKRADEYLPTYEDKDGDW 180

Query: 181 MLVGDVPWKLFIESCKRIRLMKGSDAIGTPSRTP 213
           MLVGDVPWKLFIESCKRIRLMKGSDAIGT SRTP
Sbjct: 181 MLVGDVPWKLFIESCKRIRLMKGSDAIGTASRTP 213

[Close]

BLAST of Cucsa.235820.1 vs. NCBI nr
Match: gi|700210287|gb|KGN65383.1| (hypothetical protein Csa_1G397130 [Cucumis sativus])

HSP 1 Score: 368.6 bits (945), Expect = 7.2e-99
Identity = 184/212 (86.79%), Postives = 184/212 (86.79%), Query Frame = 1


Query: 1   MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST 60
           MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST
Sbjct: 1   MSSSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSST 60

Query: 61  SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR 120
           SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR
Sbjct: 61  SKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPYLR 120

Query: 121 KLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDWML 180
                                       DYLEGGSNLNPAVKRADEYLPTYEDKDGDWML
Sbjct: 121 ----------------------------DYLEGGSNLNPAVKRADEYLPTYEDKDGDWML 180

Query: 181 VGDVPWKLFIESCKRIRLMKGSDAIGTPSRTP 213
           VGDVPWKLFIESCKRIRLMKGSDAIGTPSRTP
Sbjct: 181 VGDVPWKLFIESCKRIRLMKGSDAIGTPSRTP 184

[Close]

BLAST of Cucsa.235820.1 vs. NCBI nr
Match: gi|719994593|ref|XP_010254225.1| (PREDICTED: auxin-responsive protein IAA1-like [Nelumbo nucifera])

HSP 1 Score: 199.1 bits (505), Expect = 7.6e-48
Identity = 108/214 (50.47%), Postives = 138/214 (64.49%), Query Frame = 1


Query: 1   MSSSETLPESPQSDLTQINFDETELTLGLPG-AEFRPTTDHKSNAKRCFHDTVDADVGS- 60
           M  +ET    P+SD T +NF ETELTLGLPG A  +  T  K+N+KR F +TVD ++GS 
Sbjct: 1   MMLTETALNLPESDATGLNFKETELTLGLPGEARSQTETIAKNNSKRGFSETVDLNLGSC 60

Query: 61  STSKPRDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADGAPY 120
           S ++  D  + E    S     K  V+GWPPVRS+RK  ++     +  YVKV  DGAPY
Sbjct: 61  SKNRIEDQGESEVSGASKPPSSKAQVVGWPPVRSFRKNVLK-----SCTYVKVAVDGAPY 120

Query: 121 LRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKDGDW 180
           LRK+DL+ +  Y QL +AL  +FT F I  + L     ++P      EY+PTYEDKDGDW
Sbjct: 121 LRKVDLETYGSYQQLLSALEEMFTCFTIR-NVLNESKLMDPV--NGTEYVPTYEDKDGDW 180

Query: 181 MLVGDVPWKLFIESCKRIRLMKGSDAIGTPSRTP 213
           MLVGDVPWK+F+ SCKRIRLMK S+A+G   RTP
Sbjct: 181 MLVGDVPWKMFVASCKRIRLMKSSEAVGLAPRTP 206

[Close]

BLAST of Cucsa.235820.1 vs. NCBI nr
Match: gi|719980686|ref|XP_010249884.1| (PREDICTED: auxin-responsive protein IAA1 [Nelumbo nucifera])

HSP 1 Score: 193.4 bits (490), Expect = 4.2e-46
Identity = 104/217 (47.93%), Postives = 134/217 (61.75%), Query Frame = 1


Query: 3   SSETLPESPQSDLTQINFDETELTLGLPGAEFRPTTDHKSNAKRCFHDTVDADVGSSTSK 62
           S ET    P+S++T +NF ETELTLGLPG           N+KR F +TVD ++GSS+S 
Sbjct: 2   SPETARNPPESEVTGLNFKETELTLGLPGESRTQAEIVSKNSKRGFSETVDLNLGSSSSS 61

Query: 63  P-------RDSLDDEPPHGSSGNEEKRAVMGWPPVRSYRKRTIEMNSTTTTKYVKVGADG 122
                    +  + E P        K  V+GWPPVRS+RK     N+  +  YVKV  DG
Sbjct: 62  ETRGRSQVEEQGESEAPCAGKPPASKAQVVGWPPVRSFRK-----NALKSCTYVKVAVDG 121

Query: 123 APYLRKLDLQIFNGYHQLFNALHHLFTSFPISCDYLEGGSNLNPAVKRADEYLPTYEDKD 182
           APYLRK+DL+ ++ Y QL +AL ++FT F I  + L     ++P      EY+PTYEDKD
Sbjct: 122 APYLRKVDLETYSSYQQLLSALENMFTCFTIR-NVLNERKLMDPV--NGTEYVPTYEDKD 181

Query: 183 GDWMLVGDVPWKLFIESCKRIRLMKGSDAIGTPSRTP 213
           GDWMLVGDVPWK+F+ SCKRIRLMK S+A+G    TP
Sbjct: 182 GDWMLVGDVPWKMFVASCKRIRLMKSSEAVGLAPGTP 210

The following BLAST results are available for this feature:

BLAST of Cucsa.235820.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IAA16_ARATH	1.1e-38	42.49	Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1	[more]
IAA1_ORYSJ	1.0e-36	43.40	Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1	[more]
IAA23_ORYSJ	3.9e-36	42.59	Auxin-responsive protein IAA23 OS=Oryza sativa subsp. japonica GN=IAA23 PE=2 SV=...	[more]
IAA17_ARATH	5.1e-36	41.52	Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2	[more]
IAA14_ARATH	1.5e-35	40.99	Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2	[more]

BLAST of Cucsa.235820.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUB1_CUCSA	5.1e-99	86.79	Auxin-responsive protein OS=Cucumis sativus GN=Csa_1G397130 PE=3 SV=1	[more]
A9PE61_POPTR	1.1e-45	47.12	Auxin-responsive protein OS=Populus trichocarpa GN=POPTR_0001s17770g PE=2 SV=1	[more]
L0ASX8_POPTO	1.6e-44	46.63	Auxin-responsive protein OS=Populus tomentosa PE=3 SV=1	[more]
D7TBU1_VITVI	7.9e-44	48.84	Auxin-responsive protein OS=Vitis vinifera GN=VIT_11s0016g04490 PE=3 SV=1	[more]
W9SFI1_9ROSA	1.0e-43	48.33	Auxin-responsive protein OS=Morus notabilis GN=L484_019459 PE=3 SV=1	[more]

BLAST of Cucsa.235820.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04730.1	6.2e-40	42.49	indoleacetic acid-induced protein 16	[more]
AT1G04250.1	2.9e-37	41.52	AUX/IAA transcriptional regulator family protein	[more]
AT4G14550.1	8.4e-37	40.99	indole-3-acetic acid inducible 14	[more]
AT3G23050.1	9.3e-36	37.77	indole-3-acetic acid 7	[more]
AT1G04240.1	4.6e-35	41.71	AUX/IAA transcriptional regulator family protein	[more]

BLAST of Cucsa.235820.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464280\|ref\|XP_004149857.1\|	2.3e-121	100.00	PREDICTED: auxin-induced protein AUX22-like [Cucumis sativus]	[more]
gi\|659126766\|ref\|XP_008463353.1\|	2.7e-106	90.65	PREDICTED: auxin-responsive protein IAA16-like [Cucumis melo]	[more]
gi\|700210287\|gb\|KGN65383.1\|	7.2e-99	86.79	hypothetical protein Csa_1G397130 [Cucumis sativus]	[more]
gi\|719994593\|ref\|XP_010254225.1\|	7.6e-48	50.47	PREDICTED: auxin-responsive protein IAA1-like [Nelumbo nucifera]	[more]
gi\|719980686\|ref\|XP_010249884.1\|	4.2e-46	47.93	PREDICTED: auxin-responsive protein IAA1 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000270	PB1_dom
IPR003311	AUX_IAA

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009734	auxin-activated signaling pathway
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.235820	Cucsa.235820	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.235820.1	Cucsa.235820.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.235820.1.five_prime_UTR.1	Cucsa.235820.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.235820.1.CDS.1	Cucsa.235820.1.CDS.1	CDS
Cucsa.235820.1.CDS.2	Cucsa.235820.1.CDS.2	CDS
Cucsa.235820.1.CDS.3	Cucsa.235820.1.CDS.3	CDS
Cucsa.235820.1.CDS.4	Cucsa.235820.1.CDS.4	CDS
Cucsa.235820.1.CDS.5	Cucsa.235820.1.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.235820.1.three_prime_UTR.1	Cucsa.235820.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000270	PB1 domain	PROFILE	PS51745	PB1	coord: 106..201 score: 18
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	FAMILY NOT NAMED	coord: 3..211 score: 2.5
None	No IPR available	PANTHER	PTHR31734:SF34	AUXIN-RESPONSIVE PROTEIN IAA15	coord: 3..211 score: 2.5
None	No IPR available	unknown	SSF54277	CAD & PB1 domains	coord: 101..200 score: 3.14