Cucsa.235720.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.235720.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Anaphase-promoting complex subunit 4-like protein
Location	scaffold02012 : 421271 .. 422938 (-)
Sequence length	697

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTAAGGACGCTTTTCTTATGCCCTTCATTACAATCTCAAGAAAAATACTTTGTGAAGATATAATATCCCTATTCCCGTTTCCATCCTCGTCAAGTTGCCTGTCTTCACATGTTCCTCTCTCCGTTTCATACTACGAGGTATTTATTCTGCTATTGAGCTGTTCTATTTAAGTTTGTCTCTTGTTTACTTCTTTACTGACGTTTGTCAGTTGTTCACACATGAGTCGGTTGTTATACAACTATTCTAAATGTTAATTGTTAAAAAGTAGTTTTTATTACCTTGGTTAACAGTTTTAGAAGGCATGATGTCCACTAATGCACACTGATTCTTTCGATATGGCATTTGTTAATTTTTCAATTTGCTTTTAAACCCCATGTAGGATTCCTCTGAAGTTGTTTCTGCCGATCTGAGTTGTGAGCAGAAGTTTATAGATTATATATCTTTCAGAGTCCCAGATGATTCTTTTGCAGAAATTGCAAATTGTGTAGGCATAGTCAGAAGATTCATTCATGACCAGAGCTGCTCAAACGAGGACCATTCCTCATCTGAAGCAGTCTTAATATCTATTCCTGATGGTTCTCAGTGTGTTGATCTTTCTTTATACAAGGTAAAACTTCAAGTTAGCAAGTTTTTATTCTCTGCACCCTAATTATATATATAAAAAAAGAGGGTAAAAGATTGACAGGATCCTGTGTGAATAATCTGTGAACCTATTTGGTTGTAAACAGGATGGACAGATTGTTTTGTTATTAAATGAGACTGCTTCTACTTCTGAAAGCTCTGTTGGTTCCTATATGATGGTTGTGCAAGTGGATGACCTTCCGTTTGTATCTATGCCAAGATTTCCGTGTCTGGACAATTGGAAGATCCTTCAACTCAAGGTTTTCCCTTTTGCTTAAATCTCATCGAAAAGATTCATCATGAGTGTATAGTCTTTCATACAACCATTATTTCTGAAGTCAATTCCCCAAAGATTACTTCATATCTTAATAAATCGACTTCTGCAAATGTGCTATAATGCAAGGGCTTAATCTGTTAAATGTAATCAATTCTTTCGGCTCTGATGTTAATCAGAATTACCTCTTGTAGTGGCACATAAGAAAAAATTAGTACATCTTTTAAATATTCTGGAGATGGGAGGTTTTTTTATAGGTCTCATCCTCAAAATGTTACTTTTTTTTTTTTCTGTATTAATGTTCTTTTTGTTCTCTAGGACAACATTGTCCCTCTGCAAATGGAGAATGAGAAAGTTCGCAACATTTCTCACGCTGTCATTCCTCCTTTAGCTGTTAGTGGTGAGTGGTCATCGTTGTAATATTTCTTTTTTATTTTATGTGTAAATTGATGATGTGTTTGAAATACATTTTCAAGTGTTTAAATTAAAAAAATAAATTTTTTTATAACAAATTTGAGCATTTCACGATCACTCAAAACAGCTTTTAAAACACTTAAATAGTTTTTATCAAAAGAGTTTAAATAATGTGAAATTTTAGAATACACTTTTCTCCAGTCAATCAATCCAAACAGGTTAAATGTTATCTCAATATAAGCACTTGGTGTTCTTGTTCCAGCATCAAGAGGAGTAGCTTGTGTTTTTGCTGCGAGAAAGCGAGCGTTGGTCTACATCCTAGAGGAAGATGAGGATGAAGTATCAGATGCTGAGTGA

mRNA sequence

TTTTAAGGACGCTTTTCTTATGCCCTTCATTACAATCTCAAGAAAAATACTTTGTGAAGATATAATATCCCTATTCCCGTTTCCATCCTCGTCAAGTTGCCTGTCTTCACATGTTCCTCTCTCCGTTTCATACTACGAGGATTCCTCTGAAGTTGTTTCTGCCGATCTGAGTTGTGAGCAGAAGTTTATAGATTATATATCTTTCAGAGTCCCAGATGATTCTTTTGCAGAAATTGCAAATTGTGTAGGCATAGTCAGAAGATTCATTCATGACCAGAGCTGCTCAAACGAGGACCATTCCTCATCTGAAGCAGTCTTAATATCTATTCCTGATGGTTCTCAGTGTGTTGATCTTTCTTTATACAAGGATGGACAGATTGTTTTGTTATTAAATGAGACTGCTTCTACTTCTGAAAGCTCTGTTGGTTCCTATATGATGGTTGTGCAAGTGGATGACCTTCCGTTTGTATCTATGCCAAGATTTCCGTGTCTGGACAATTGGAAGATCCTTCAACTCAAGGACAACATTGTCCCTCTGCAAATGGAGAATGAGAAAGTTCGCAACATTTCTCACGCTGTCATTCCTCCTTTAGCTGTTAGTGCATCAAGAGGAGTAGCTTGTGTTTTTGCTGCGAGAAAGCGAGCGTTGGTCTACATCCTAGAGGAAGATGAGGATGAAGTATCAGATGCTGAGTGA

Coding sequence (CDS)

TTTTAAGGACGCTTTTCTTATGCCCTTCATTACAATCTCAAGAAAAATACTTTGTGAAGATATAATATCCCTATTCCCGTTTCCATCCTCGTCAAGTTGCCTGTCTTCACATGTTCCTCTCTCCGTTTCATACTACGAGGATTCCTCTGAAGTTGTTTCTGCCGATCTGAGTTGTGAGCAGAAGTTTATAGATTATATATCTTTCAGAGTCCCAGATGATTCTTTTGCAGAAATTGCAAATTGTGTAGGCATAGTCAGAAGATTCATTCATGACCAGAGCTGCTCAAACGAGGACCATTCCTCATCTGAAGCAGTCTTAATATCTATTCCTGATGGTTCTCAGTGTGTTGATCTTTCTTTATACAAGGATGGACAGATTGTTTTGTTATTAAATGAGACTGCTTCTACTTCTGAAAGCTCTGTTGGTTCCTATATGATGGTTGTGCAAGTGGATGACCTTCCGTTTGTATCTATGCCAAGATTTCCGTGTCTGGACAATTGGAAGATCCTTCAACTCAAGGACAACATTGTCCCTCTGCAAATGGAGAATGAGAAAGTTCGCAACATTTCTCACGCTGTCATTCCTCCTTTAGCTGTTAGTGCATCAAGAGGAGTAGCTTGTGTTTTTGCTGCGAGAAAGCGAGCGTTGGTCTACATCCTAGAGGAAGATGAGGATGAAGTATCAGATGCTGAGTGA

Protein sequence

FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQKFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSLYKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQMENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE*

Homology

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BLAST of Cucsa.235720.1 vs. Swiss-Prot
Match: APC4_ARATH (Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana GN=APC4 PE=2 SV=2)

HSP 1 Score: 234.6 bits (597), Expect = 1.1e-60
Identity = 122/230 (53.04%), Postives = 166/230 (72.17%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FK AF MPF TISRKI C  ++ L P   S++   + +P+S+S+Y++    +S D  C+ 
Sbjct: 549 FKMAFQMPFTTISRKISCMKLLPLCPLQLSTTQTPTTIPMSLSFYKNE---LSDDTPCQS 608

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
            + DYISF+VPD++F EI+NC+GI + +  + +     ++S EAVL+S+P+G  CVDLSL
Sbjct: 609 GYTDYISFQVPDETFPEISNCIGIAKGYKQNSNNEKNGYTSLEAVLLSVPNGYTCVDLSL 668

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YKD ++VLLLN+T + SE S  + MMVVQ  DL F+S+     L+ W++  LK +IV L+
Sbjct: 669 YKDKELVLLLNKTNTDSEGSGEACMMVVQTGDLAFISISGSSSLNQWELEDLKGSIVNLE 728

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDED-EVSD 230
           MENEKVR + H+VI PLAVSASRGVACVFA R+RALVYILEEDED E+SD
Sbjct: 729 MENEKVRKVPHSVIAPLAVSASRGVACVFAERRRALVYILEEDEDEEISD 775

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BLAST of Cucsa.235720.1 vs. TrEMBL
Match: A0A0A0LWY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G385570 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 1.3e-124
Identity = 229/231 (99.13%), Postives = 230/231 (99.57%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ
Sbjct: 5   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 64

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
           KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL
Sbjct: 65  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 124

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPR PCLDNWKILQLKDN+VPLQ
Sbjct: 125 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRSPCLDNWKILQLKDNVVPLQ 184

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE
Sbjct: 185 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 235

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BLAST of Cucsa.235720.1 vs. TrEMBL
Match: E0CVY8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0181g00210 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 3.7e-79
Identity = 149/231 (64.50%), Postives = 188/231 (81.39%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FK+AF MPF T+S KILCED++ +FP PSS      +VP+S+SYY+D S+ VS   +C+ 
Sbjct: 545 FKEAFAMPFTTVSEKILCEDLLPMFPCPSSPF----NVPMSISYYKDISQAVSTYQTCQH 604

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
           +FIDYI+F+VPD+SF+++ANC+GI R F+HD S   + ++S EAVL+S+PDG  CVDLSL
Sbjct: 605 RFIDYIAFKVPDESFSDVANCIGIARGFMHDSSSVKKGYTSLEAVLLSVPDGYHCVDLSL 664

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YK+ Q+VLLLNET STSESS  ++M+VVQV DLPFVS+PR   L+ WK+ +LKD+I  LQ
Sbjct: 665 YKESQMVLLLNETTSTSESSGSAHMLVVQVTDLPFVSVPRSTNLNYWKLHELKDSITYLQ 724

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           MENEKVR+I H+ I PLAVSASRGVACVFAARKRALVYILEEDEDE +DAE
Sbjct: 725 MENEKVRSIPHSAIAPLAVSASRGVACVFAARKRALVYILEEDEDEATDAE 771

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BLAST of Cucsa.235720.1 vs. TrEMBL
Match: A0A0D2RFQ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G022700 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 8.3e-79
Identity = 151/232 (65.09%), Postives = 190/232 (81.90%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FK+AFLMPF TISRK+LC+D++ LF  PSSS+ +S  VP+SV+YY+D+S  VS+  + E 
Sbjct: 541 FKEAFLMPFTTISRKMLCKDVLPLFALPSSSASVSVSVPISVTYYKDASTSVSSYQTHEH 600

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSS-EAVLISIPDGSQCVDLS 120
            FIDYISF++P DS + IANC+GI RRF+H  S S+ + S+S EAVL+S+PDG  CVDLS
Sbjct: 601 GFIDYISFQIPGDSSSNIANCIGISRRFMHSLSNSSTEESASLEAVLLSVPDGYHCVDLS 660

Query: 121 LYKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPL 180
           LYK+GQIVLLLNET S SE S  S MM+VQ DDLPF S+PR  C++ W + QLKD+++ L
Sbjct: 661 LYKEGQIVLLLNETTSASECSGESCMMIVQADDLPFASIPRSGCINTWNLDQLKDSVMHL 720

Query: 181 QMENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           ++ENEKVRNI H+V+ PLAVSASRGVACVFAARKRALVYIL+EDED+VSD+E
Sbjct: 721 RLENEKVRNIPHSVVAPLAVSASRGVACVFAARKRALVYILDEDEDDVSDSE 772

[Close]

BLAST of Cucsa.235720.1 vs. TrEMBL
Match: A0A0B0P1E8_GOSAR (Anaphase-promoting complex subunit 4-like protein OS=Gossypium arboreum GN=F383_05168 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.4e-78
Identity = 152/232 (65.52%), Postives = 188/232 (81.03%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FK+AFLMPF TISRK+LC+D++ LF  PSSS+ +S  VP+SV+YY+D+S  VS+ L+ E 
Sbjct: 541 FKEAFLMPFTTISRKMLCKDVLPLFALPSSSASVSVSVPISVTYYKDASTSVSSYLTHEH 600

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSN-EDHSSSEAVLISIPDGSQCVDLS 120
            FIDYISF++P DS + IANC+GI RRF+H  S S+ E+ +S EAVL+S+PDG  CVDLS
Sbjct: 601 GFIDYISFQIPGDSSSNIANCIGISRRFMHSLSNSSIEESASLEAVLLSVPDGYHCVDLS 660

Query: 121 LYKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPL 180
           LYK GQIVLLLNE+ S SE S  S MM+VQ DDLPFVS+PR  C++ W + QLKD++  L
Sbjct: 661 LYKKGQIVLLLNESTSASECSGESCMMIVQADDLPFVSIPRSGCINTWNLDQLKDSVTHL 720

Query: 181 QMENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           ++ENEKVRNI H+V  PLAVSASRGVACVFAARKRALVYIL+EDED+VSD E
Sbjct: 721 RLENEKVRNIPHSVAAPLAVSASRGVACVFAARKRALVYILDEDEDDVSDGE 772

[Close]

BLAST of Cucsa.235720.1 vs. TrEMBL
Match: A0A061GEV0_THECC (Transducin/WD40 repeat-like superfamily protein isoform 4 OS=Theobroma cacao GN=TCM_029983 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 5.5e-75
Identity = 142/231 (61.47%), Postives = 184/231 (79.65%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FK+AFLMPF TIS+KILC+D++ LF  PSS + +S  VP+SV++Y+D+S  +S+  + E 
Sbjct: 508 FKEAFLMPFTTISQKILCKDVLPLFALPSSPASMSVTVPMSVTFYKDASTAMSSYQTHEH 567

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
            +IDYISF++P DS  +IANC+GI + F+H  S   ED +S EAVL+S+PDG  CVDLSL
Sbjct: 568 GYIDYISFQIPGDSSLDIANCIGISKGFMHSSSNITEDSASLEAVLLSVPDGYHCVDLSL 627

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YK+GQIVLLLNET + SES   S MM+VQ +DLPFVS+ R  C++ W + QLKD+++ LQ
Sbjct: 628 YKEGQIVLLLNETTAASESFGESCMMIVQANDLPFVSISRSSCINRWNLNQLKDSVMYLQ 687

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           +ENEKVR I H+V+ PLAVSASRGVACVFAARKRALVYIL+EDED++SD E
Sbjct: 688 LENEKVRIIPHSVVAPLAVSASRGVACVFAARKRALVYILDEDEDDISDTE 738

[Close]

BLAST of Cucsa.235720.1 vs. TAIR10
Match: AT4G21530.1 (AT4G21530.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 234.6 bits (597), Expect = 6.3e-62
Identity = 122/230 (53.04%), Postives = 166/230 (72.17%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FK AF MPF TISRKI C  ++ L P   S++   + +P+S+S+Y++    +S D  C+ 
Sbjct: 549 FKMAFQMPFTTISRKISCMKLLPLCPLQLSTTQTPTTIPMSLSFYKNE---LSDDTPCQS 608

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
            + DYISF+VPD++F EI+NC+GI + +  + +     ++S EAVL+S+P+G  CVDLSL
Sbjct: 609 GYTDYISFQVPDETFPEISNCIGIAKGYKQNSNNEKNGYTSLEAVLLSVPNGYTCVDLSL 668

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YKD ++VLLLN+T + SE S  + MMVVQ  DL F+S+     L+ W++  LK +IV L+
Sbjct: 669 YKDKELVLLLNKTNTDSEGSGEACMMVVQTGDLAFISISGSSSLNQWELEDLKGSIVNLE 728

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDED-EVSD 230
           MENEKVR + H+VI PLAVSASRGVACVFA R+RALVYILEEDED E+SD
Sbjct: 729 MENEKVRKVPHSVIAPLAVSASRGVACVFAERRRALVYILEEDEDEEISD 775

[Close]

BLAST of Cucsa.235720.1 vs. NCBI nr
Match: gi|778660566|ref|XP_011656470.1| (PREDICTED: anaphase-promoting complex subunit 4 [Cucumis sativus])

HSP 1 Score: 453.8 bits (1166), Expect = 1.9e-124
Identity = 229/231 (99.13%), Postives = 230/231 (99.57%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ
Sbjct: 544 FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 603

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
           KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL
Sbjct: 604 KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 663

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPR PCLDNWKILQLKDN+VPLQ
Sbjct: 664 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRSPCLDNWKILQLKDNVVPLQ 723

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE
Sbjct: 724 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 774

[Close]

BLAST of Cucsa.235720.1 vs. NCBI nr
Match: gi|700210276|gb|KGN65372.1| (hypothetical protein Csa_1G385570 [Cucumis sativus])

HSP 1 Score: 453.8 bits (1166), Expect = 1.9e-124
Identity = 229/231 (99.13%), Postives = 230/231 (99.57%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ
Sbjct: 5   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 64

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
           KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL
Sbjct: 65  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 124

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPR PCLDNWKILQLKDN+VPLQ
Sbjct: 125 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRSPCLDNWKILQLKDNVVPLQ 184

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE
Sbjct: 185 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 235

[Close]

BLAST of Cucsa.235720.1 vs. NCBI nr
Match: gi|659126790|ref|XP_008463366.1| (PREDICTED: anaphase-promoting complex subunit 4 [Cucumis melo])

HSP 1 Score: 442.2 bits (1136), Expect = 5.6e-121
Identity = 223/231 (96.54%), Postives = 228/231 (98.70%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FK+AFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVV ADLSCEQ
Sbjct: 544 FKEAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVPADLSCEQ 603

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
           KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL
Sbjct: 604 KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 663

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YKDGQIVLLLNETASTSESSVGSYMMVV+VDDLPFVS+PR PCLDNWKILQLKDN+VPLQ
Sbjct: 664 YKDGQIVLLLNETASTSESSVGSYMMVVKVDDLPFVSVPRSPCLDNWKILQLKDNVVPLQ 723

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           MENEKVRNISHAVI PLAVSASRGVACVFAARKRALVYILEE+EDEVSDAE
Sbjct: 724 MENEKVRNISHAVISPLAVSASRGVACVFAARKRALVYILEENEDEVSDAE 774

[Close]

BLAST of Cucsa.235720.1 vs. NCBI nr
Match: gi|731437257|ref|XP_010646155.1| (PREDICTED: anaphase-promoting complex subunit 4-like isoform X1 [Vitis vinifera])

HSP 1 Score: 302.8 bits (774), Expect = 5.3e-79
Identity = 149/231 (64.50%), Postives = 188/231 (81.39%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FK+AF MPF T+S KILCED++ +FP PSS      +VP+S+SYY+D S+ VS   +C+ 
Sbjct: 545 FKEAFAMPFTTVSEKILCEDLLPMFPCPSSPF----NVPMSISYYKDISQAVSTYQTCQH 604

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
           +FIDYI+F+VPD+SF+++ANC+GI R F+HD S   + ++S EAVL+S+PDG  CVDLSL
Sbjct: 605 RFIDYIAFKVPDESFSDVANCIGIARGFMHDSSSVKKGYTSLEAVLLSVPDGYHCVDLSL 664

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YK+ Q+VLLLNET STSESS  ++M+VVQV DLPFVS+PR   L+ WK+ +LKD+I  LQ
Sbjct: 665 YKESQMVLLLNETTSTSESSGSAHMLVVQVTDLPFVSVPRSTNLNYWKLHELKDSITYLQ 724

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           MENEKVR+I H+ I PLAVSASRGVACVFAARKRALVYILEEDEDE +DAE
Sbjct: 725 MENEKVRSIPHSAIAPLAVSASRGVACVFAARKRALVYILEEDEDEATDAE 771

[Close]

BLAST of Cucsa.235720.1 vs. NCBI nr
Match: gi|731437263|ref|XP_010646158.1| (PREDICTED: anaphase-promoting complex subunit 4-like isoform X3 [Vitis vinifera])

HSP 1 Score: 302.8 bits (774), Expect = 5.3e-79
Identity = 149/231 (64.50%), Postives = 188/231 (81.39%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FK+AF MPF T+S KILCED++ +FP PSS      +VP+S+SYY+D S+ VS   +C+ 
Sbjct: 447 FKEAFAMPFTTVSEKILCEDLLPMFPCPSSPF----NVPMSISYYKDISQAVSTYQTCQH 506

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
           +FIDYI+F+VPD+SF+++ANC+GI R F+HD S   + ++S EAVL+S+PDG  CVDLSL
Sbjct: 507 RFIDYIAFKVPDESFSDVANCIGIARGFMHDSSSVKKGYTSLEAVLLSVPDGYHCVDLSL 566

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YK+ Q+VLLLNET STSESS  ++M+VVQV DLPFVS+PR   L+ WK+ +LKD+I  LQ
Sbjct: 567 YKESQMVLLLNETTSTSESSGSAHMLVVQVTDLPFVSVPRSTNLNYWKLHELKDSITYLQ 626

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           MENEKVR+I H+ I PLAVSASRGVACVFAARKRALVYILEEDEDE +DAE
Sbjct: 627 MENEKVRSIPHSAIAPLAVSASRGVACVFAARKRALVYILEEDEDEATDAE 673

The following BLAST results are available for this feature:

BLAST of Cucsa.235720.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
APC4_ARATH	1.1e-60	53.04	Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana GN=APC4 PE=2 SV=2	[more]

BLAST of Cucsa.235720.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWY6_CUCSA	1.3e-124	99.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G385570 PE=4 SV=1	[more]
E0CVY8_VITVI	3.7e-79	64.50	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0181g00210 PE=4 SV=...	[more]
A0A0D2RFQ0_GOSRA	8.3e-79	65.09	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G022700 PE=4 SV=1	[more]
A0A0B0P1E8_GOSAR	2.4e-78	65.52	Anaphase-promoting complex subunit 4-like protein OS=Gossypium arboreum GN=F383_...	[more]
A0A061GEV0_THECC	5.5e-75	61.47	Transducin/WD40 repeat-like superfamily protein isoform 4 OS=Theobroma cacao GN=...	[more]

BLAST of Cucsa.235720.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21530.1	6.3e-62	53.04	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of Cucsa.235720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778660566\|ref\|XP_011656470.1\|	1.9e-124	99.13	PREDICTED: anaphase-promoting complex subunit 4 [Cucumis sativus]	[more]
gi\|700210276\|gb\|KGN65372.1\|	1.9e-124	99.13	hypothetical protein Csa_1G385570 [Cucumis sativus]	[more]
gi\|659126790\|ref\|XP_008463366.1\|	5.6e-121	96.54	PREDICTED: anaphase-promoting complex subunit 4 [Cucumis melo]	[more]
gi\|731437257\|ref\|XP_010646155.1\|	5.3e-79	64.50	PREDICTED: anaphase-promoting complex subunit 4-like isoform X1 [Vitis vinifera]	[more]
gi\|731437263\|ref\|XP_010646158.1\|	5.3e-79	64.50	PREDICTED: anaphase-promoting complex subunit 4-like isoform X3 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR024789	APC4

Vocabulary: **Cellular Component**
Term	Definition
GO:0005680	anaphase-promoting complex

Vocabulary: **Biological Process**
Term	Definition
GO:0030071	regulation of mitotic metaphase/anaphase transition
GO:0031145	anaphase-promoting complex-dependent catabolic process

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031145	anaphase-promoting complex-dependent catabolic process
biological_process	GO:0030071	regulation of mitotic metaphase/anaphase transition
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0048481	plant ovule development
cellular_component	GO:0005680	anaphase-promoting complex
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.235720	Cucsa.235720	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.235720.1	Cucsa.235720.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.235720.1.CDS.5	Cucsa.235720.1.CDS.5	CDS
Cucsa.235720.1.CDS.4	Cucsa.235720.1.CDS.4	CDS
Cucsa.235720.1.CDS.3	Cucsa.235720.1.CDS.3	CDS
Cucsa.235720.1.CDS.2	Cucsa.235720.1.CDS.2	CDS
Cucsa.235720.1.CDS.1	Cucsa.235720.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024789	Anaphase-promoting complex subunit 4	PANTHER	PTHR13260	ANAPHASE PROMOTING COMPLEX SUBUNIT 4 APC4 CYCLOSOME SUBUNIT 4	coord: 1..231 score: 7.2