Cucsa.235720 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.235720
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Anaphase-promoting complex subunit 4-like protein
Location	scaffold02012 : 421271 .. 422938 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTAAGGACGCTTTTCTTATGCCCTTCATTACAATCTCAAGAAAAATACTTTGTGAAGATATAATATCCCTATTCCCGTTTCCATCCTCGTCAAGTTGCCTGTCTTCACATGTTCCTCTCTCCGTTTCATACTACGAGGTATTTATTCTGCTATTGAGCTGTTCTATTTAAGTTTGTCTCTTGTTTACTTCTTTACTGACGTTTGTCAGTTGTTCACACATGAGTCGGTTGTTATACAACTATTCTAAATGTTAATTGTTAAAAAGTAGTTTTTATTACCTTGGTTAACAGTTTTAGAAGGCATGATGTCCACTAATGCACACTGATTCTTTCGATATGGCATTTGTTAATTTTTCAATTTGCTTTTAAACCCCATGTAGGATTCCTCTGAAGTTGTTTCTGCCGATCTGAGTTGTGAGCAGAAGTTTATAGATTATATATCTTTCAGAGTCCCAGATGATTCTTTTGCAGAAATTGCAAATTGTGTAGGCATAGTCAGAAGATTCATTCATGACCAGAGCTGCTCAAACGAGGACCATTCCTCATCTGAAGCAGTCTTAATATCTATTCCTGATGGTTCTCAGTGTGTTGATCTTTCTTTATACAAGGTAAAACTTCAAGTTAGCAAGTTTTTATTCTCTGCACCCTAATTATATATATAAAAAAAGAGGGTAAAAGATTGACAGGATCCTGTGTGAATAATCTGTGAACCTATTTGGTTGTAAACAGGATGGACAGATTGTTTTGTTATTAAATGAGACTGCTTCTACTTCTGAAAGCTCTGTTGGTTCCTATATGATGGTTGTGCAAGTGGATGACCTTCCGTTTGTATCTATGCCAAGATTTCCGTGTCTGGACAATTGGAAGATCCTTCAACTCAAGGTTTTCCCTTTTGCTTAAATCTCATCGAAAAGATTCATCATGAGTGTATAGTCTTTCATACAACCATTATTTCTGAAGTCAATTCCCCAAAGATTACTTCATATCTTAATAAATCGACTTCTGCAAATGTGCTATAATGCAAGGGCTTAATCTGTTAAATGTAATCAATTCTTTCGGCTCTGATGTTAATCAGAATTACCTCTTGTAGTGGCACATAAGAAAAAATTAGTACATCTTTTAAATATTCTGGAGATGGGAGGTTTTTTTATAGGTCTCATCCTCAAAATGTTACTTTTTTTTTTTTCTGTATTAATGTTCTTTTTGTTCTCTAGGACAACATTGTCCCTCTGCAAATGGAGAATGAGAAAGTTCGCAACATTTCTCACGCTGTCATTCCTCCTTTAGCTGTTAGTGGTGAGTGGTCATCGTTGTAATATTTCTTTTTTATTTTATGTGTAAATTGATGATGTGTTTGAAATACATTTTCAAGTGTTTAAATTAAAAAAATAAATTTTTTTATAACAAATTTGAGCATTTCACGATCACTCAAAACAGCTTTTAAAACACTTAAATAGTTTTTATCAAAAGAGTTTAAATAATGTGAAATTTTAGAATACACTTTTCTCCAGTCAATCAATCCAAACAGGTTAAATGTTATCTCAATATAAGCACTTGGTGTTCTTGTTCCAGCATCAAGAGGAGTAGCTTGTGTTTTTGCTGCGAGAAAGCGAGCGTTGGTCTACATCCTAGAGGAAGATGAGGATGAAGTATCAGATGCTGAGTGA

mRNA sequence

TTTTAAGGACGCTTTTCTTATGCCCTTCATTACAATCTCAAGAAAAATACTTTGTGAAGATATAATATCCCTATTCCCGTTTCCATCCTCGTCAAGTTGCCTGTCTTCACATGTTCCTCTCTCCGTTTCATACTACGAGGATTCCTCTGAAGTTGTTTCTGCCGATCTGAGTTGTGAGCAGAAGTTTATAGATTATATATCTTTCAGAGTCCCAGATGATTCTTTTGCAGAAATTGCAAATTGTGTAGGCATAGTCAGAAGATTCATTCATGACCAGAGCTGCTCAAACGAGGACCATTCCTCATCTGAAGCAGTCTTAATATCTATTCCTGATGGTTCTCAGTGTGTTGATCTTTCTTTATACAAGGATGGACAGATTGTTTTGTTATTAAATGAGACTGCTTCTACTTCTGAAAGCTCTGTTGGTTCCTATATGATGGTTGTGCAAGTGGATGACCTTCCGTTTGTATCTATGCCAAGATTTCCGTGTCTGGACAATTGGAAGATCCTTCAACTCAAGGACAACATTGTCCCTCTGCAAATGGAGAATGAGAAAGTTCGCAACATTTCTCACGCTGTCATTCCTCCTTTAGCTGTTAGTGCATCAAGAGGAGTAGCTTGTGTTTTTGCTGCGAGAAAGCGAGCGTTGGTCTACATCCTAGAGGAAGATGAGGATGAAGTATCAGATGCTGAGTGA

Coding sequence (CDS)

TTTTAAGGACGCTTTTCTTATGCCCTTCATTACAATCTCAAGAAAAATACTTTGTGAAGATATAATATCCCTATTCCCGTTTCCATCCTCGTCAAGTTGCCTGTCTTCACATGTTCCTCTCTCCGTTTCATACTACGAGGATTCCTCTGAAGTTGTTTCTGCCGATCTGAGTTGTGAGCAGAAGTTTATAGATTATATATCTTTCAGAGTCCCAGATGATTCTTTTGCAGAAATTGCAAATTGTGTAGGCATAGTCAGAAGATTCATTCATGACCAGAGCTGCTCAAACGAGGACCATTCCTCATCTGAAGCAGTCTTAATATCTATTCCTGATGGTTCTCAGTGTGTTGATCTTTCTTTATACAAGGATGGACAGATTGTTTTGTTATTAAATGAGACTGCTTCTACTTCTGAAAGCTCTGTTGGTTCCTATATGATGGTTGTGCAAGTGGATGACCTTCCGTTTGTATCTATGCCAAGATTTCCGTGTCTGGACAATTGGAAGATCCTTCAACTCAAGGACAACATTGTCCCTCTGCAAATGGAGAATGAGAAAGTTCGCAACATTTCTCACGCTGTCATTCCTCCTTTAGCTGTTAGTGCATCAAGAGGAGTAGCTTGTGTTTTTGCTGCGAGAAAGCGAGCGTTGGTCTACATCCTAGAGGAAGATGAGGATGAAGTATCAGATGCTGAGTGA

Protein sequence

FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQKFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSLYKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQMENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE*

Homology

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BLAST of Cucsa.235720 vs. Swiss-Prot
Match: APC4_ARATH (Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana GN=APC4 PE=2 SV=2)

HSP 1 Score: 234.6 bits (597), Expect = 1.1e-60
Identity = 122/230 (53.04%), Postives = 166/230 (72.17%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FK AF MPF TISRKI C  ++ L P   S++   + +P+S+S+Y++    +S D  C+ 
Sbjct: 549 FKMAFQMPFTTISRKISCMKLLPLCPLQLSTTQTPTTIPMSLSFYKNE---LSDDTPCQS 608

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
            + DYISF+VPD++F EI+NC+GI + +  + +     ++S EAVL+S+P+G  CVDLSL
Sbjct: 609 GYTDYISFQVPDETFPEISNCIGIAKGYKQNSNNEKNGYTSLEAVLLSVPNGYTCVDLSL 668

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YKD ++VLLLN+T + SE S  + MMVVQ  DL F+S+     L+ W++  LK +IV L+
Sbjct: 669 YKDKELVLLLNKTNTDSEGSGEACMMVVQTGDLAFISISGSSSLNQWELEDLKGSIVNLE 728

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDED-EVSD 230
           MENEKVR + H+VI PLAVSASRGVACVFA R+RALVYILEEDED E+SD
Sbjct: 729 MENEKVRKVPHSVIAPLAVSASRGVACVFAERRRALVYILEEDEDEEISD 775

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BLAST of Cucsa.235720 vs. TrEMBL
Match: A0A0A0LWY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G385570 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 1.3e-124
Identity = 229/231 (99.13%), Postives = 230/231 (99.57%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ
Sbjct: 5   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 64

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
           KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL
Sbjct: 65  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 124

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPR PCLDNWKILQLKDN+VPLQ
Sbjct: 125 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRSPCLDNWKILQLKDNVVPLQ 184

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE
Sbjct: 185 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 235

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BLAST of Cucsa.235720 vs. TrEMBL
Match: E0CVY8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0181g00210 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 3.7e-79
Identity = 149/231 (64.50%), Postives = 188/231 (81.39%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FK+AF MPF T+S KILCED++ +FP PSS      +VP+S+SYY+D S+ VS   +C+ 
Sbjct: 545 FKEAFAMPFTTVSEKILCEDLLPMFPCPSSPF----NVPMSISYYKDISQAVSTYQTCQH 604

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
           +FIDYI+F+VPD+SF+++ANC+GI R F+HD S   + ++S EAVL+S+PDG  CVDLSL
Sbjct: 605 RFIDYIAFKVPDESFSDVANCIGIARGFMHDSSSVKKGYTSLEAVLLSVPDGYHCVDLSL 664

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YK+ Q+VLLLNET STSESS  ++M+VVQV DLPFVS+PR   L+ WK+ +LKD+I  LQ
Sbjct: 665 YKESQMVLLLNETTSTSESSGSAHMLVVQVTDLPFVSVPRSTNLNYWKLHELKDSITYLQ 724

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           MENEKVR+I H+ I PLAVSASRGVACVFAARKRALVYILEEDEDE +DAE
Sbjct: 725 MENEKVRSIPHSAIAPLAVSASRGVACVFAARKRALVYILEEDEDEATDAE 771

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BLAST of Cucsa.235720 vs. TrEMBL
Match: A0A0D2RFQ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G022700 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 8.3e-79
Identity = 151/232 (65.09%), Postives = 190/232 (81.90%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FK+AFLMPF TISRK+LC+D++ LF  PSSS+ +S  VP+SV+YY+D+S  VS+  + E 
Sbjct: 541 FKEAFLMPFTTISRKMLCKDVLPLFALPSSSASVSVSVPISVTYYKDASTSVSSYQTHEH 600

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSS-EAVLISIPDGSQCVDLS 120
            FIDYISF++P DS + IANC+GI RRF+H  S S+ + S+S EAVL+S+PDG  CVDLS
Sbjct: 601 GFIDYISFQIPGDSSSNIANCIGISRRFMHSLSNSSTEESASLEAVLLSVPDGYHCVDLS 660

Query: 121 LYKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPL 180
           LYK+GQIVLLLNET S SE S  S MM+VQ DDLPF S+PR  C++ W + QLKD+++ L
Sbjct: 661 LYKEGQIVLLLNETTSASECSGESCMMIVQADDLPFASIPRSGCINTWNLDQLKDSVMHL 720

Query: 181 QMENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           ++ENEKVRNI H+V+ PLAVSASRGVACVFAARKRALVYIL+EDED+VSD+E
Sbjct: 721 RLENEKVRNIPHSVVAPLAVSASRGVACVFAARKRALVYILDEDEDDVSDSE 772

[Close]

BLAST of Cucsa.235720 vs. TrEMBL
Match: A0A0B0P1E8_GOSAR (Anaphase-promoting complex subunit 4-like protein OS=Gossypium arboreum GN=F383_05168 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.4e-78
Identity = 152/232 (65.52%), Postives = 188/232 (81.03%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FK+AFLMPF TISRK+LC+D++ LF  PSSS+ +S  VP+SV+YY+D+S  VS+ L+ E 
Sbjct: 541 FKEAFLMPFTTISRKMLCKDVLPLFALPSSSASVSVSVPISVTYYKDASTSVSSYLTHEH 600

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSN-EDHSSSEAVLISIPDGSQCVDLS 120
            FIDYISF++P DS + IANC+GI RRF+H  S S+ E+ +S EAVL+S+PDG  CVDLS
Sbjct: 601 GFIDYISFQIPGDSSSNIANCIGISRRFMHSLSNSSIEESASLEAVLLSVPDGYHCVDLS 660

Query: 121 LYKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPL 180
           LYK GQIVLLLNE+ S SE S  S MM+VQ DDLPFVS+PR  C++ W + QLKD++  L
Sbjct: 661 LYKKGQIVLLLNESTSASECSGESCMMIVQADDLPFVSIPRSGCINTWNLDQLKDSVTHL 720

Query: 181 QMENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           ++ENEKVRNI H+V  PLAVSASRGVACVFAARKRALVYIL+EDED+VSD E
Sbjct: 721 RLENEKVRNIPHSVAAPLAVSASRGVACVFAARKRALVYILDEDEDDVSDGE 772

[Close]

BLAST of Cucsa.235720 vs. TrEMBL
Match: A0A061GEV0_THECC (Transducin/WD40 repeat-like superfamily protein isoform 4 OS=Theobroma cacao GN=TCM_029983 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 5.5e-75
Identity = 142/231 (61.47%), Postives = 184/231 (79.65%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FK+AFLMPF TIS+KILC+D++ LF  PSS + +S  VP+SV++Y+D+S  +S+  + E 
Sbjct: 508 FKEAFLMPFTTISQKILCKDVLPLFALPSSPASMSVTVPMSVTFYKDASTAMSSYQTHEH 567

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
            +IDYISF++P DS  +IANC+GI + F+H  S   ED +S EAVL+S+PDG  CVDLSL
Sbjct: 568 GYIDYISFQIPGDSSLDIANCIGISKGFMHSSSNITEDSASLEAVLLSVPDGYHCVDLSL 627

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YK+GQIVLLLNET + SES   S MM+VQ +DLPFVS+ R  C++ W + QLKD+++ LQ
Sbjct: 628 YKEGQIVLLLNETTAASESFGESCMMIVQANDLPFVSISRSSCINRWNLNQLKDSVMYLQ 687

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           +ENEKVR I H+V+ PLAVSASRGVACVFAARKRALVYIL+EDED++SD E
Sbjct: 688 LENEKVRIIPHSVVAPLAVSASRGVACVFAARKRALVYILDEDEDDISDTE 738

[Close]

BLAST of Cucsa.235720 vs. TAIR10
Match: AT4G21530.1 (AT4G21530.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 234.6 bits (597), Expect = 6.3e-62
Identity = 122/230 (53.04%), Postives = 166/230 (72.17%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FK AF MPF TISRKI C  ++ L P   S++   + +P+S+S+Y++    +S D  C+ 
Sbjct: 549 FKMAFQMPFTTISRKISCMKLLPLCPLQLSTTQTPTTIPMSLSFYKNE---LSDDTPCQS 608

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
            + DYISF+VPD++F EI+NC+GI + +  + +     ++S EAVL+S+P+G  CVDLSL
Sbjct: 609 GYTDYISFQVPDETFPEISNCIGIAKGYKQNSNNEKNGYTSLEAVLLSVPNGYTCVDLSL 668

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YKD ++VLLLN+T + SE S  + MMVVQ  DL F+S+     L+ W++  LK +IV L+
Sbjct: 669 YKDKELVLLLNKTNTDSEGSGEACMMVVQTGDLAFISISGSSSLNQWELEDLKGSIVNLE 728

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDED-EVSD 230
           MENEKVR + H+VI PLAVSASRGVACVFA R+RALVYILEEDED E+SD
Sbjct: 729 MENEKVRKVPHSVIAPLAVSASRGVACVFAERRRALVYILEEDEDEEISD 775

[Close]

BLAST of Cucsa.235720 vs. NCBI nr
Match: gi|778660566|ref|XP_011656470.1| (PREDICTED: anaphase-promoting complex subunit 4 [Cucumis sativus])

HSP 1 Score: 453.8 bits (1166), Expect = 1.9e-124
Identity = 229/231 (99.13%), Postives = 230/231 (99.57%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ
Sbjct: 544 FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 603

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
           KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL
Sbjct: 604 KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 663

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPR PCLDNWKILQLKDN+VPLQ
Sbjct: 664 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRSPCLDNWKILQLKDNVVPLQ 723

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE
Sbjct: 724 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 774

[Close]

BLAST of Cucsa.235720 vs. NCBI nr
Match: gi|700210276|gb|KGN65372.1| (hypothetical protein Csa_1G385570 [Cucumis sativus])

HSP 1 Score: 453.8 bits (1166), Expect = 1.9e-124
Identity = 229/231 (99.13%), Postives = 230/231 (99.57%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ
Sbjct: 5   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 64

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
           KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL
Sbjct: 65  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 124

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPR PCLDNWKILQLKDN+VPLQ
Sbjct: 125 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRSPCLDNWKILQLKDNVVPLQ 184

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE
Sbjct: 185 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 235

[Close]

BLAST of Cucsa.235720 vs. NCBI nr
Match: gi|659126790|ref|XP_008463366.1| (PREDICTED: anaphase-promoting complex subunit 4 [Cucumis melo])

HSP 1 Score: 442.2 bits (1136), Expect = 5.6e-121
Identity = 223/231 (96.54%), Postives = 228/231 (98.70%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FK+AFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVV ADLSCEQ
Sbjct: 544 FKEAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVPADLSCEQ 603

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
           KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL
Sbjct: 604 KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 663

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YKDGQIVLLLNETASTSESSVGSYMMVV+VDDLPFVS+PR PCLDNWKILQLKDN+VPLQ
Sbjct: 664 YKDGQIVLLLNETASTSESSVGSYMMVVKVDDLPFVSVPRSPCLDNWKILQLKDNVVPLQ 723

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           MENEKVRNISHAVI PLAVSASRGVACVFAARKRALVYILEE+EDEVSDAE
Sbjct: 724 MENEKVRNISHAVISPLAVSASRGVACVFAARKRALVYILEENEDEVSDAE 774

[Close]

BLAST of Cucsa.235720 vs. NCBI nr
Match: gi|731437257|ref|XP_010646155.1| (PREDICTED: anaphase-promoting complex subunit 4-like isoform X1 [Vitis vinifera])

HSP 1 Score: 302.8 bits (774), Expect = 5.3e-79
Identity = 149/231 (64.50%), Postives = 188/231 (81.39%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FK+AF MPF T+S KILCED++ +FP PSS      +VP+S+SYY+D S+ VS   +C+ 
Sbjct: 545 FKEAFAMPFTTVSEKILCEDLLPMFPCPSSPF----NVPMSISYYKDISQAVSTYQTCQH 604

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
           +FIDYI+F+VPD+SF+++ANC+GI R F+HD S   + ++S EAVL+S+PDG  CVDLSL
Sbjct: 605 RFIDYIAFKVPDESFSDVANCIGIARGFMHDSSSVKKGYTSLEAVLLSVPDGYHCVDLSL 664

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YK+ Q+VLLLNET STSESS  ++M+VVQV DLPFVS+PR   L+ WK+ +LKD+I  LQ
Sbjct: 665 YKESQMVLLLNETTSTSESSGSAHMLVVQVTDLPFVSVPRSTNLNYWKLHELKDSITYLQ 724

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           MENEKVR+I H+ I PLAVSASRGVACVFAARKRALVYILEEDEDE +DAE
Sbjct: 725 MENEKVRSIPHSAIAPLAVSASRGVACVFAARKRALVYILEEDEDEATDAE 771

[Close]

BLAST of Cucsa.235720 vs. NCBI nr
Match: gi|731437263|ref|XP_010646158.1| (PREDICTED: anaphase-promoting complex subunit 4-like isoform X3 [Vitis vinifera])

HSP 1 Score: 302.8 bits (774), Expect = 5.3e-79
Identity = 149/231 (64.50%), Postives = 188/231 (81.39%), Query Frame = 1


Query: 1   FKDAFLMPFITISRKILCEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQ 60
           FK+AF MPF T+S KILCED++ +FP PSS      +VP+S+SYY+D S+ VS   +C+ 
Sbjct: 447 FKEAFAMPFTTVSEKILCEDLLPMFPCPSSPF----NVPMSISYYKDISQAVSTYQTCQH 506

Query: 61  KFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNEDHSSSEAVLISIPDGSQCVDLSL 120
           +FIDYI+F+VPD+SF+++ANC+GI R F+HD S   + ++S EAVL+S+PDG  CVDLSL
Sbjct: 507 RFIDYIAFKVPDESFSDVANCIGIARGFMHDSSSVKKGYTSLEAVLLSVPDGYHCVDLSL 566

Query: 121 YKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRFPCLDNWKILQLKDNIVPLQ 180
           YK+ Q+VLLLNET STSESS  ++M+VVQV DLPFVS+PR   L+ WK+ +LKD+I  LQ
Sbjct: 567 YKESQMVLLLNETTSTSESSGSAHMLVVQVTDLPFVSVPRSTNLNYWKLHELKDSITYLQ 626

Query: 181 MENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 232
           MENEKVR+I H+ I PLAVSASRGVACVFAARKRALVYILEEDEDE +DAE
Sbjct: 627 MENEKVRSIPHSAIAPLAVSASRGVACVFAARKRALVYILEEDEDEATDAE 673

The following BLAST results are available for this feature:

BLAST of Cucsa.235720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
APC4_ARATH	1.1e-60	53.04	Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana GN=APC4 PE=2 SV=2	[more]

BLAST of Cucsa.235720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWY6_CUCSA	1.3e-124	99.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G385570 PE=4 SV=1	[more]
E0CVY8_VITVI	3.7e-79	64.50	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0181g00210 PE=4 SV=...	[more]
A0A0D2RFQ0_GOSRA	8.3e-79	65.09	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G022700 PE=4 SV=1	[more]
A0A0B0P1E8_GOSAR	2.4e-78	65.52	Anaphase-promoting complex subunit 4-like protein OS=Gossypium arboreum GN=F383_...	[more]
A0A061GEV0_THECC	5.5e-75	61.47	Transducin/WD40 repeat-like superfamily protein isoform 4 OS=Theobroma cacao GN=...	[more]

BLAST of Cucsa.235720 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21530.1	6.3e-62	53.04	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of Cucsa.235720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778660566\|ref\|XP_011656470.1\|	1.9e-124	99.13	PREDICTED: anaphase-promoting complex subunit 4 [Cucumis sativus]	[more]
gi\|700210276\|gb\|KGN65372.1\|	1.9e-124	99.13	hypothetical protein Csa_1G385570 [Cucumis sativus]	[more]
gi\|659126790\|ref\|XP_008463366.1\|	5.6e-121	96.54	PREDICTED: anaphase-promoting complex subunit 4 [Cucumis melo]	[more]
gi\|731437257\|ref\|XP_010646155.1\|	5.3e-79	64.50	PREDICTED: anaphase-promoting complex subunit 4-like isoform X1 [Vitis vinifera]	[more]
gi\|731437263\|ref\|XP_010646158.1\|	5.3e-79	64.50	PREDICTED: anaphase-promoting complex subunit 4-like isoform X3 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR024789	APC4

Vocabulary: **Cellular Component**
Term	Definition
GO:0005680	anaphase-promoting complex

Vocabulary: **Biological Process**
Term	Definition
GO:0030071	regulation of mitotic metaphase/anaphase transition
GO:0031145	anaphase-promoting complex-dependent catabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0048481	plant ovule development
biological_process	GO:0030071	regulation of mitotic metaphase/anaphase transition
biological_process	GO:0031145	anaphase-promoting complex-dependent catabolic process
cellular_component	GO:0005680	anaphase-promoting complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.235720.1	Cucsa.235720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024789	Anaphase-promoting complex subunit 4	PANTHER	PTHR13260	ANAPHASE PROMOTING COMPLEX SUBUNIT 4 APC4 CYCLOSOME SUBUNIT 4	coord: 1..231 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.235720	Csa1G385570	Cucumber (Chinese Long) v2	cgycuB333
Cucsa.235720	MELO3C025320	Melon (DHL92) v3.5.1	cgymeB396
Cucsa.235720	CSPI01G19480	Wild cucumber (PI 183967)	cgycpiB348
Cucsa.235720	MELO3C025319.2	Melon (DHL92) v3.6.1	cgymedB394
Cucsa.235720	CsaV3_1G030810	Cucumber (Chinese Long) v3	cgycucB353

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.235720	Cucurbita maxima (Rimu)	cgycmaB0648
Cucsa.235720	Cucurbita maxima (Rimu)	cgycmaB0649
Cucsa.235720	Cucurbita moschata (Rifu)	cgycmoB0649
Cucsa.235720	Cucurbita moschata (Rifu)	cgycmoB0650
Cucsa.235720	Wild cucumber (PI 183967)	cgycpiB349
Cucsa.235720	Watermelon (Charleston Gray)	cgywcgB411
Cucsa.235720	Watermelon (97103) v1	cgywmB438
Cucsa.235720	Cucurbita pepo (Zucchini)	cgycpeB0618
Cucsa.235720	Cucurbita pepo (Zucchini)	cgycpeB0619
Cucsa.235720	Bottle gourd (USVL1VR-Ls)	cgylsiB382
Cucsa.235720	Silver-seed gourd	carcgyB0042
Cucsa.235720	Silver-seed gourd	carcgyB0157
Cucsa.235720	Watermelon (97103) v2	cgywmbB412
Cucsa.235720	Wax gourd	cgywgoB465