Cucsa.218700.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.GTGTGGTTCCTACATGGGCATGAAACTAAGAATTTGTGACGATCCCGTTCAAAGGCGTCGACCACAAACCCAAATTCGAACTCGACGTAACTCCCCAACATTTTTCAAACAAATCGACCTGAATTTCGAAGTTCAACTCAAATGTCAGCACTTCCAAATCCGTGAAGAAGAAACTAGTAATACAACAACTCTAATTGATGAACACATAGTATCACAACATCCCTTTGCAACTTTCCGACTTCCTATCTCCATCTTGGAGCATGGTGACAAAACTTTGAAGCTATTACTTTTTCGGGAGTTTCATATGTATAGAGACATCATCAACATCGAGCATCTGGTTGACGAAATAATAAAATATTGGGTTACAAAAGTTGAAGAAGAAGAAGAAGATCAAGAGAATAGTACTTCTTCTAGGGTGTTTAAAAAGATTTATCGTCTCGAAATTACGTTAGAGTTGTTGATTTTTCAGATAGTTCGTGTAATGGATTATCAACCACAGGTACTGATGATGGTTCCAACAAGCGATAGTGCTATGGAGAGTATGTTAAAGAGAGTGGAAAACGAAGAAATAATGAAATTAGGTGATGATGACTGCATTCATTGTGTTATTTGTTTGGAGGAAATTGGTAAAGAGGAGAAGGGAAGTGAGGGAGTGGTGTTACAAATGCCATGTTTGCATGTGTTTCATGGAGAATGTATAAACAAGTGGTTGAATACAAGTCATTACTGTCCAACTTGTAGATTTCCAATGCCTATAAATTAA GTGTGGTTCCTACATGGGCATGAAACTAAGAATTTGTGACGATCCCGTTCAAAGGCGTCGACCACAAACCCAAATTCGAACTCGACGTAACTCCCCAACATTTTTCAAACAAATCGACCTGAATTTCGAAGTTCAACTCAAATGTCAGCACTTCCAAATCCGTGAAGAAGAAACTAGTAATACAACAACTCTAATTGATGAACACATAGTATCACAACATCCCTTTGCAACTTTCCGACTTCCTATCTCCATCTTGGAGCATGGTGACAAAACTTTGAAGCTATTACTTTTTCGGGAGTTTCATATGTATAGAGACATCATCAACATCGAGCATCTGGTTGACGAAATAATAAAATATTGGGTTACAAAAGTTGAAGAAGAAGAAGAAGATCAAGAGAATAGTACTTCTTCTAGGGTACTGATGATGGTTCCAACAAGCGATAGTGCTATGGAGAGTATGTTAAAGAGAGTGGAAAACGAAGAAATAATGAAATTAGGTGATGATGACTGCATTCATTGTGTTATTTGTTTGGAGGAAATTGGTAAAGAGGAGAAGGGAAGTGAGGGAGTGGTGTTACAAATGCCATGTTTGCATGTGTTTCATGGAGAATGTATAAACAAGTGGTTGAATACAAGTCATTACTGTCCAACTTGTAGATTTCCAATGCCTATAAATTAA GTGTGGTTCCTACATGGGCATGAAACTAAGAATTTGTGACGATCCCGTTCAAAGGCGTCGACCACAAACCCAAATTCGAACTCGACGTAACTCCCCAACATTTTTCAAACAAATCGACCTGAATTTCGAAGTTCAACTCAAATGTCAGCACTTCCAAATCCGTGAAGAAGAAACTAGTAATACAACAACTCTAATTGATGAACACATAGTATCACAACATCCCTTTGCAACTTTCCGACTTCCTATCTCCATCTTGGAGCATGGTGACAAAACTTTGAAGCTATTACTTTTTCGGGAGTTTCATATGTATAGAGACATCATCAACATCGAGCATCTGGTTGACGAAATAATAAAATATTGGGTTACAAAAGTTGAAGAAGAAGAAGAAGATCAAGAGAATAGTACTTCTTCTAGGGTACTGATGATGGTTCCAACAAGCGATAGTGCTATGGAGAGTATGTTAAAGAGAGTGGAAAACGAAGAAATAATGAAATTAGGTGATGATGACTGCATTCATTGTGTTATTTGTTTGGAGGAAATTGGTAAAGAGGAGAAGGGAAGTGAGGGAGTGGTGTTACAAATGCCATGTTTGCATGTGTTTCATGGAGAATGTATAAACAAGTGGTTGAATACAAGTCATTACTGTCCAACTTGTAGATTTCCAATGCCTATAAATTAA CGSYMGMKLRICDDPVQRRRPQTQIRTRRNSPTFFKQIDLNFEVQLKCQHFQIREEETSNTTTLIDEHIVSQHPFATFRLPISILEHGDKTLKLLLFREFHMYRDIINIEHLVDEIIKYWVTKVEEEEEDQENSTSSRVLMMVPTSDSAMESMLKRVENEEIMKLGDDDCIHCVICLEEIGKEEKGSEGVVLQMPCLHVFHGECINKWLNTSHYCPTCRFPMPIN*
BLAST of Cucsa.218700.1 vs. Swiss-Prot
Match: SIS3_ARATH (E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3 PE=2 SV=2) HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09 Identity = 46/138 (33.33%), Postives = 67/138 (48.55%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. Swiss-Prot
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08 Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. Swiss-Prot
Match: SDIR1_ARATH (E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 3.1e-07 Identity = 32/91 (35.16%), Postives = 44/91 (48.35%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 2.0e-06 Identity = 27/80 (33.75%), Postives = 42/80 (52.50%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 4.5e-06 Identity = 22/53 (41.51%), Postives = 31/53 (58.49%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. TrEMBL
Match: A0A0A0K2A5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G068580 PE=4 SV=1) HSP 1 Score: 455.3 bits (1170), Expect = 4.4e-125 Identity = 225/253 (88.93%), Postives = 225/253 (88.93%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. TrEMBL
Match: E5GCQ3_CUCME (Hypothetical zinc finger protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 293.9 bits (751), Expect = 1.7e-76 Identity = 155/253 (61.26%), Postives = 181/253 (71.54%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. TrEMBL
Match: A0A0A0K7L0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067560 PE=4 SV=1) HSP 1 Score: 282.7 bits (722), Expect = 3.9e-73 Identity = 148/254 (58.27%), Postives = 175/254 (68.90%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. TrEMBL
Match: E5GCQ4_CUCME (Hypothetical zinc finger protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 282.3 bits (721), Expect = 5.1e-73 Identity = 144/248 (58.06%), Postives = 178/248 (71.77%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. TrEMBL
Match: A0A0A0K2A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067550 PE=4 SV=1) HSP 1 Score: 278.5 bits (711), Expect = 7.3e-72 Identity = 145/252 (57.54%), Postives = 172/252 (68.25%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. TAIR10
Match: AT3G47990.1 (AT3G47990.1 SUGAR-INSENSITIVE 3) HSP 1 Score: 64.7 bits (156), Expect = 8.4e-11 Identity = 46/138 (33.33%), Postives = 67/138 (48.55%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. TAIR10
Match: AT1G26800.1 (AT1G26800.1 RING/U-box superfamily protein) HSP 1 Score: 62.0 bits (149), Expect = 5.4e-10 Identity = 28/53 (52.83%), Postives = 32/53 (60.38%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. TAIR10
Match: AT3G46620.1 (AT3G46620.1 zinc finger (C3HC4-type RING finger) family protein) HSP 1 Score: 61.2 bits (147), Expect = 9.3e-10 Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. TAIR10
Match: AT1G14200.1 (AT1G14200.1 RING/U-box superfamily protein) HSP 1 Score: 60.1 bits (144), Expect = 2.1e-09 Identity = 30/81 (37.04%), Postives = 42/81 (51.85%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. TAIR10
Match: AT1G74620.1 (AT1G74620.1 RING/U-box superfamily protein) HSP 1 Score: 58.9 bits (141), Expect = 4.6e-09 Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. NCBI nr
Match: gi|700188572|gb|KGN43805.1| (hypothetical protein Csa_7G068580 [Cucumis sativus]) HSP 1 Score: 455.3 bits (1170), Expect = 6.2e-125 Identity = 225/253 (88.93%), Postives = 225/253 (88.93%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. NCBI nr
Match: gi|659111003|ref|XP_008455525.1| (PREDICTED: uncharacterized protein LOC103495676 [Cucumis melo]) HSP 1 Score: 293.9 bits (751), Expect = 2.4e-76 Identity = 155/253 (61.26%), Postives = 181/253 (71.54%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. NCBI nr
Match: gi|700188568|gb|KGN43801.1| (hypothetical protein Csa_7G067560 [Cucumis sativus]) HSP 1 Score: 282.7 bits (722), Expect = 5.6e-73 Identity = 148/254 (58.27%), Postives = 175/254 (68.90%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. NCBI nr
Match: gi|659111005|ref|XP_008455526.1| (PREDICTED: uncharacterized protein LOC103495678 [Cucumis melo]) HSP 1 Score: 282.3 bits (721), Expect = 7.2e-73 Identity = 144/248 (58.06%), Postives = 178/248 (71.77%), Query Frame = 1
BLAST of Cucsa.218700.1 vs. NCBI nr
Match: gi|700188567|gb|KGN43800.1| (hypothetical protein Csa_7G067550 [Cucumis sativus]) HSP 1 Score: 278.5 bits (711), Expect = 1.0e-71 Identity = 145/252 (57.54%), Postives = 172/252 (68.25%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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