Cucsa.205380.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.205380.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Histidine kinase 4-like protein
Location	scaffold01416 : 480884 .. 481132 (+)
Sequence length	199

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGGATGGGTATGAAGATGCAGTAGAGGCACCCCTCAGTGGCTGTAAGGTTTAATGAGCAAATTGGAAGTAGAAAAGGGTCCACATTCATTCAACCCAAGAGGGCTTGGCTTCCTAAGTTTCTCTTGCTCTGGGTTCTGTTGGTGGCATTCATCAGTTTGTTAATCTACAAGGGAATGAACACTGATAACAAAGTTAGAAGAAAGGAAGTTCTGGGAAGTATGTGTAACCAGAGGGAGGGCAAGG

mRNA sequence

ATGACCGGATGGCAAATTGGAAGTAGAAAAGGGTCCACATTCATTCAACCCAAGAGGGCTTGGCTTCCTAAGTTTCTCTTGCTCTGGGTTCTGTTGGTGGCATTCATCAGTTTGTTAATCTACAAGGGAATGAACACTGATAACAAAGTTAGAAGAAAGGAAGTTCTGGGAAGTATGTGTAACCAGAGGGAGGGCAAGG

Coding sequence (CDS)

ATGACCGGATGGCAAATTGGAAGTAGAAAAGGGTCCACATTCATTCAACCCAAGAGGGCTTGGCTTCCTAAGTTTCTCTTGCTCTGGGTTCTGTTGGTGGCATTCATCAGTTTGTTAATCTACAAGGGAATGAACACTGATAACAAAGTTAGAAGAAAGGAAGTTCTGGGAAGTATGTGTAACCAGAGGGAGGGCAAGG

Protein sequence

MTGWQIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQREGKX

Homology

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BLAST of Cucsa.205380.1 vs. Swiss-Prot
Match: AHK4_ARATH (Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.6e-13
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1


Query: 6   IGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
           +G++KGSTFIQ  RA LPK L+LW+++V FIS  IY+ M+  NK+RR+EVL SMC+QR
Sbjct: 111 MGNKKGSTFIQEHRALLPKALILWIIIVGFISSGIYQWMDDANKIRREEVLVSMCDQR 168

[Close]

BLAST of Cucsa.205380.1 vs. TrEMBL
Match: B8QJH0_BETPN (Cytokinin receptor 1 (Fragment) OS=Betula pendula GN=CRE1 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.9e-16
Identity = 39/59 (66.10%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          Q+G+++G TFIQ  R WLPKFLLLW+L++AF+S +IY  M+ DNKVRRKE+LGSMC+QR
Sbjct: 20 QMGTKRGCTFIQANRDWLPKFLLLWILVMAFLSTMIYNSMDDDNKVRRKEILGSMCDQR 78

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BLAST of Cucsa.205380.1 vs. TrEMBL
Match: A0A061E9K7_THECC (CHASE domain containing histidine kinase protein isoform 1 OS=Theobroma cacao GN=TCM_011246 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.4e-16
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          Q+G+++G TFIQ  RAWLPKFLLLWV+++AF+S  IYK M+ DNKVRRKEVL SMC+QR
Sbjct: 20 QMGTKRGYTFIQANRAWLPKFLLLWVMVMAFLSTWIYKKMDADNKVRRKEVLSSMCDQR 78

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BLAST of Cucsa.205380.1 vs. TrEMBL
Match: A0A061EG96_THECC (CHASE domain containing histidine kinase protein isoform 2 OS=Theobroma cacao GN=TCM_011246 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.4e-16
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          Q+G+++G TFIQ  RAWLPKFLLLWV+++AF+S  IYK M+ DNKVRRKEVL SMC+QR
Sbjct: 20 QMGTKRGYTFIQANRAWLPKFLLLWVMVMAFLSTWIYKKMDADNKVRRKEVLSSMCDQR 78

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BLAST of Cucsa.205380.1 vs. TrEMBL
Match: A0A0B0NL07_GOSAR (Histidine kinase 4-like protein OS=Gossypium arboreum GN=F383_20398 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.4e-16
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          Q+G+++G TFIQ  RAWLPKFLLLWV+++AF+S  IYK M+ DNKVRRKEVL SMC+QR
Sbjct: 20 QMGTKRGYTFIQANRAWLPKFLLLWVMVMAFLSTWIYKKMDADNKVRRKEVLSSMCDQR 78

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BLAST of Cucsa.205380.1 vs. TrEMBL
Match: A0A0D2S7K4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G031500 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-15
Identity = 40/59 (67.80%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          Q+G+++G TFIQ  RAWLPKFLLLWV+++AF+S  IYK M+ DNKVRRKEVL +MC+QR
Sbjct: 20 QMGTKRGYTFIQANRAWLPKFLLLWVMVMAFLSTWIYKKMDADNKVRRKEVLSTMCDQR 78

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BLAST of Cucsa.205380.1 vs. TAIR10
Match: AT2G01830.2 (AT2G01830.2 CHASE domain containing histidine kinase protein)

HSP 1 Score: 74.3 bits (181), Expect = 3.1e-14
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1


Query: 6   IGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
           +G++KGSTFIQ  RA LPK L+LW+++V FIS  IY+ M+  NK+RR+EVL SMC+QR
Sbjct: 111 MGNKKGSTFIQEHRALLPKALILWIIIVGFISSGIYQWMDDANKIRREEVLVSMCDQR 168

[Close]

BLAST of Cucsa.205380.1 vs. NCBI nr
Match: gi|659114017|ref|XP_008456868.1| (PREDICTED: histidine kinase 4-like [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 6.6e-22
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          QIGS+KGSTFIQ KRAWLPKFLLLWVLLVAFIS+LIYKGM+ DNKVRRKEVLGSMC+QR
Sbjct: 19 QIGSKKGSTFIQAKRAWLPKFLLLWVLLVAFISMLIYKGMDADNKVRRKEVLGSMCDQR 77

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BLAST of Cucsa.205380.1 vs. NCBI nr
Match: gi|449445312|ref|XP_004140417.1| (PREDICTED: histidine kinase 4 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 3.3e-21
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 1


Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          QIGS+KGSTFIQ KR WLPKFLLLWVLLVAFIS+LIYKGM+ DNKVRRKEVLGSMC+QR
Sbjct: 19 QIGSKKGSTFIQAKRDWLPKFLLLWVLLVAFISMLIYKGMDADNKVRRKEVLGSMCDQR 77

[Close]

BLAST of Cucsa.205380.1 vs. NCBI nr
Match: gi|802596824|ref|XP_012072360.1| (PREDICTED: histidine kinase 4 isoform X1 [Jatropha curcas])

HSP 1 Score: 94.7 bits (234), Expect = 6.4e-17
Identity = 42/59 (71.19%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          Q+G+++G TFIQ  RAWLPKFLLLWV+L+AFIS +IY GM+ DNKVRR++VLGSMC+QR
Sbjct: 26 QMGTKRGYTFIQAHRAWLPKFLLLWVMLMAFISWMIYNGMDADNKVRRRDVLGSMCDQR 84

[Close]

BLAST of Cucsa.205380.1 vs. NCBI nr
Match: gi|802596826|ref|XP_012072361.1| (PREDICTED: histidine kinase 4 isoform X2 [Jatropha curcas])

HSP 1 Score: 94.7 bits (234), Expect = 6.4e-17
Identity = 42/59 (71.19%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          Q+G+++G TFIQ  RAWLPKFLLLWV+L+AFIS +IY GM+ DNKVRR++VLGSMC+QR
Sbjct: 26 QMGTKRGYTFIQAHRAWLPKFLLLWVMLMAFISWMIYNGMDADNKVRRRDVLGSMCDQR 84

[Close]

BLAST of Cucsa.205380.1 vs. NCBI nr
Match: gi|190148353|gb|ACE63259.1| (cytokinin receptor 1 [Betula pendula])

HSP 1 Score: 91.3 bits (225), Expect = 7.0e-16
Identity = 39/59 (66.10%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          Q+G+++G TFIQ  R WLPKFLLLW+L++AF+S +IY  M+ DNKVRRKE+LGSMC+QR
Sbjct: 20 QMGTKRGCTFIQANRDWLPKFLLLWILVMAFLSTMIYNSMDDDNKVRRKEILGSMCDQR 78

The following BLAST results are available for this feature:

BLAST of Cucsa.205380.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AHK4_ARATH	5.6e-13	60.34	Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1	[more]

BLAST of Cucsa.205380.1 vs. TrEMBL


Match Name	E-value	Identity	Description
B8QJH0_BETPN	4.9e-16	66.10	Cytokinin receptor 1 (Fragment) OS=Betula pendula GN=CRE1 PE=2 SV=1	[more]
A0A061E9K7_THECC	6.4e-16	69.49	CHASE domain containing histidine kinase protein isoform 1 OS=Theobroma cacao GN...	[more]
A0A061EG96_THECC	6.4e-16	69.49	CHASE domain containing histidine kinase protein isoform 2 OS=Theobroma cacao GN...	[more]
A0A0B0NL07_GOSAR	6.4e-16	69.49	Histidine kinase 4-like protein OS=Gossypium arboreum GN=F383_20398 PE=4 SV=1	[more]
A0A0D2S7K4_GOSRA	1.4e-15	67.80	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G031500 PE=4 SV=1	[more]

BLAST of Cucsa.205380.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01830.2	3.1e-14	60.34	CHASE domain containing histidine kinase protein	[more]

BLAST of Cucsa.205380.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114017\|ref\|XP_008456868.1\|	6.6e-22	89.83	PREDICTED: histidine kinase 4-like [Cucumis melo]	[more]
gi\|449445312\|ref\|XP_004140417.1\|	3.3e-21	88.14	PREDICTED: histidine kinase 4 [Cucumis sativus]	[more]
gi\|802596824\|ref\|XP_012072360.1\|	6.4e-17	71.19	PREDICTED: histidine kinase 4 isoform X1 [Jatropha curcas]	[more]
gi\|802596826\|ref\|XP_012072361.1\|	6.4e-17	71.19	PREDICTED: histidine kinase 4 isoform X2 [Jatropha curcas]	[more]
gi\|190148353\|gb\|ACE63259.1\|	7.0e-16	66.10	cytokinin receptor 1 [Betula pendula]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0023014	signal transduction by protein phosphorylation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0016020	membrane
cellular_component	GO:0009365	protein histidine kinase complex
molecular_function	GO:0000155	phosphorelay sensor kinase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.205380	Cucsa.205380	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.205380.1	Cucsa.205380.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.205380.1.CDS.1	Cucsa.205380.1.CDS.1	CDS
Cucsa.205380.1.CDS.2	Cucsa.205380.1.CDS.2	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24423	TWO-COMPONENT SENSOR HISTIDINE KINASE	coord: 1..63 score: 6.0
None	No IPR available	PANTHER	PTHR24423:SF517	HISTIDINE KINASE 4	coord: 1..63 score: 6.0