Cucsa.205380 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.205380
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionHistidine kinase 4-like protein
Locationscaffold01416 : 480884 .. 481132 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCGGATGGGTATGAAGATGCAGTAGAGGCACCCCTCAGTGGCTGTAAGGTTTAATGAGCAAATTGGAAGTAGAAAAGGGTCCACATTCATTCAACCCAAGAGGGCTTGGCTTCCTAAGTTTCTCTTGCTCTGGGTTCTGTTGGTGGCATTCATCAGTTTGTTAATCTACAAGGGAATGAACACTGATAACAAAGTTAGAAGAAAGGAAGTTCTGGGAAGTATGTGTAACCAGAGGGAGGGCAAGG

mRNA sequence

ATGACCGGATGGCAAATTGGAAGTAGAAAAGGGTCCACATTCATTCAACCCAAGAGGGCTTGGCTTCCTAAGTTTCTCTTGCTCTGGGTTCTGTTGGTGGCATTCATCAGTTTGTTAATCTACAAGGGAATGAACACTGATAACAAAGTTAGAAGAAAGGAAGTTCTGGGAAGTATGTGTAACCAGAGGGAGGGCAAGG

Coding sequence (CDS)

ATGACCGGATGGCAAATTGGAAGTAGAAAAGGGTCCACATTCATTCAACCCAAGAGGGCTTGGCTTCCTAAGTTTCTCTTGCTCTGGGTTCTGTTGGTGGCATTCATCAGTTTGTTAATCTACAAGGGAATGAACACTGATAACAAAGTTAGAAGAAAGGAAGTTCTGGGAAGTATGTGTAACCAGAGGGAGGGCAAGG

Protein sequence

MTGWQIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQREGKX
Homology
[Close]
BLAST of Cucsa.205380 vs. Swiss-Prot
Match: AHK4_ARATH (Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.6e-13
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1 

Query: 6   IGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
           +G++KGSTFIQ  RA LPK L+LW+++V FIS  IY+ M+  NK+RR+EVL SMC+QR
Sbjct: 111 MGNKKGSTFIQEHRALLPKALILWIIIVGFISSGIYQWMDDANKIRREEVLVSMCDQR 168

[Close]
BLAST of Cucsa.205380 vs. TrEMBL
Match: B8QJH0_BETPN (Cytokinin receptor 1 (Fragment) OS=Betula pendula GN=CRE1 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.9e-16
Identity = 39/59 (66.10%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          Q+G+++G TFIQ  R WLPKFLLLW+L++AF+S +IY  M+ DNKVRRKE+LGSMC+QR
Sbjct: 20 QMGTKRGCTFIQANRDWLPKFLLLWILVMAFLSTMIYNSMDDDNKVRRKEILGSMCDQR 78

[Close]
BLAST of Cucsa.205380 vs. TrEMBL
Match: A0A061E9K7_THECC (CHASE domain containing histidine kinase protein isoform 1 OS=Theobroma cacao GN=TCM_011246 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.4e-16
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          Q+G+++G TFIQ  RAWLPKFLLLWV+++AF+S  IYK M+ DNKVRRKEVL SMC+QR
Sbjct: 20 QMGTKRGYTFIQANRAWLPKFLLLWVMVMAFLSTWIYKKMDADNKVRRKEVLSSMCDQR 78

[Close]
BLAST of Cucsa.205380 vs. TrEMBL
Match: A0A061EG96_THECC (CHASE domain containing histidine kinase protein isoform 2 OS=Theobroma cacao GN=TCM_011246 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.4e-16
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          Q+G+++G TFIQ  RAWLPKFLLLWV+++AF+S  IYK M+ DNKVRRKEVL SMC+QR
Sbjct: 20 QMGTKRGYTFIQANRAWLPKFLLLWVMVMAFLSTWIYKKMDADNKVRRKEVLSSMCDQR 78

[Close]
BLAST of Cucsa.205380 vs. TrEMBL
Match: A0A0B0NL07_GOSAR (Histidine kinase 4-like protein OS=Gossypium arboreum GN=F383_20398 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.4e-16
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          Q+G+++G TFIQ  RAWLPKFLLLWV+++AF+S  IYK M+ DNKVRRKEVL SMC+QR
Sbjct: 20 QMGTKRGYTFIQANRAWLPKFLLLWVMVMAFLSTWIYKKMDADNKVRRKEVLSSMCDQR 78

[Close]
BLAST of Cucsa.205380 vs. TrEMBL
Match: A0A0D2S7K4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G031500 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-15
Identity = 40/59 (67.80%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          Q+G+++G TFIQ  RAWLPKFLLLWV+++AF+S  IYK M+ DNKVRRKEVL +MC+QR
Sbjct: 20 QMGTKRGYTFIQANRAWLPKFLLLWVMVMAFLSTWIYKKMDADNKVRRKEVLSTMCDQR 78

[Close]
BLAST of Cucsa.205380 vs. TAIR10
Match: AT2G01830.2 (AT2G01830.2 CHASE domain containing histidine kinase protein)

HSP 1 Score: 74.3 bits (181), Expect = 3.1e-14
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1 

Query: 6   IGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
           +G++KGSTFIQ  RA LPK L+LW+++V FIS  IY+ M+  NK+RR+EVL SMC+QR
Sbjct: 111 MGNKKGSTFIQEHRALLPKALILWIIIVGFISSGIYQWMDDANKIRREEVLVSMCDQR 168

[Close]
BLAST of Cucsa.205380 vs. NCBI nr
Match: gi|659114017|ref|XP_008456868.1| (PREDICTED: histidine kinase 4-like [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 6.6e-22
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1 

Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          QIGS+KGSTFIQ KRAWLPKFLLLWVLLVAFIS+LIYKGM+ DNKVRRKEVLGSMC+QR
Sbjct: 19 QIGSKKGSTFIQAKRAWLPKFLLLWVLLVAFISMLIYKGMDADNKVRRKEVLGSMCDQR 77

[Close]
BLAST of Cucsa.205380 vs. NCBI nr
Match: gi|449445312|ref|XP_004140417.1| (PREDICTED: histidine kinase 4 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 3.3e-21
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 1 

Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          QIGS+KGSTFIQ KR WLPKFLLLWVLLVAFIS+LIYKGM+ DNKVRRKEVLGSMC+QR
Sbjct: 19 QIGSKKGSTFIQAKRDWLPKFLLLWVLLVAFISMLIYKGMDADNKVRRKEVLGSMCDQR 77

[Close]
BLAST of Cucsa.205380 vs. NCBI nr
Match: gi|802596824|ref|XP_012072360.1| (PREDICTED: histidine kinase 4 isoform X1 [Jatropha curcas])

HSP 1 Score: 94.7 bits (234), Expect = 6.4e-17
Identity = 42/59 (71.19%), Postives = 53/59 (89.83%), Query Frame = 1 

Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          Q+G+++G TFIQ  RAWLPKFLLLWV+L+AFIS +IY GM+ DNKVRR++VLGSMC+QR
Sbjct: 26 QMGTKRGYTFIQAHRAWLPKFLLLWVMLMAFISWMIYNGMDADNKVRRRDVLGSMCDQR 84

[Close]
BLAST of Cucsa.205380 vs. NCBI nr
Match: gi|802596826|ref|XP_012072361.1| (PREDICTED: histidine kinase 4 isoform X2 [Jatropha curcas])

HSP 1 Score: 94.7 bits (234), Expect = 6.4e-17
Identity = 42/59 (71.19%), Postives = 53/59 (89.83%), Query Frame = 1 

Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          Q+G+++G TFIQ  RAWLPKFLLLWV+L+AFIS +IY GM+ DNKVRR++VLGSMC+QR
Sbjct: 26 QMGTKRGYTFIQAHRAWLPKFLLLWVMLMAFISWMIYNGMDADNKVRRRDVLGSMCDQR 84

[Close]
BLAST of Cucsa.205380 vs. NCBI nr
Match: gi|190148353|gb|ACE63259.1| (cytokinin receptor 1 [Betula pendula])

HSP 1 Score: 91.3 bits (225), Expect = 7.0e-16
Identity = 39/59 (66.10%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 5  QIGSRKGSTFIQPKRAWLPKFLLLWVLLVAFISLLIYKGMNTDNKVRRKEVLGSMCNQR 64
          Q+G+++G TFIQ  R WLPKFLLLW+L++AF+S +IY  M+ DNKVRRKE+LGSMC+QR
Sbjct: 20 QMGTKRGCTFIQANRDWLPKFLLLWILVMAFLSTMIYNSMDDDNKVRRKEILGSMCDQR 78

The following BLAST results are available for this feature:
BLAST of Cucsa.205380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AHK4_ARATH5.6e-1360.34Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1[more]
BLAST of Cucsa.205380 vs. TrEMBL
Match NameE-valueIdentityDescription
B8QJH0_BETPN4.9e-1666.10Cytokinin receptor 1 (Fragment) OS=Betula pendula GN=CRE1 PE=2 SV=1[more]
A0A061E9K7_THECC6.4e-1669.49CHASE domain containing histidine kinase protein isoform 1 OS=Theobroma cacao GN... [more]
A0A061EG96_THECC6.4e-1669.49CHASE domain containing histidine kinase protein isoform 2 OS=Theobroma cacao GN... [more]
A0A0B0NL07_GOSAR6.4e-1669.49Histidine kinase 4-like protein OS=Gossypium arboreum GN=F383_20398 PE=4 SV=1[more]
A0A0D2S7K4_GOSRA1.4e-1567.80Uncharacterized protein OS=Gossypium raimondii GN=B456_013G031500 PE=4 SV=1[more]
BLAST of Cucsa.205380 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G01830.23.1e-1460.34 CHASE domain containing histidine kinase protein[more]
BLAST of Cucsa.205380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114017|ref|XP_008456868.1|6.6e-2289.83PREDICTED: histidine kinase 4-like [Cucumis melo][more]
gi|449445312|ref|XP_004140417.1|3.3e-2188.14PREDICTED: histidine kinase 4 [Cucumis sativus][more]
gi|802596824|ref|XP_012072360.1|6.4e-1771.19PREDICTED: histidine kinase 4 isoform X1 [Jatropha curcas][more]
gi|802596826|ref|XP_012072361.1|6.4e-1771.19PREDICTED: histidine kinase 4 isoform X2 [Jatropha curcas][more]
gi|190148353|gb|ACE63259.1|7.0e-1666.10cytokinin receptor 1 [Betula pendula][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000160 phosphorelay signal transduction system
biological_process GO:0023014 signal transduction by protein phosphorylation
cellular_component GO:0005622 intracellular
cellular_component GO:0016020 membrane
cellular_component GO:0009365 protein histidine kinase complex
molecular_function GO:0000155 phosphorelay sensor kinase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.205380.1Cucsa.205380.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24423TWO-COMPONENT SENSOR HISTIDINE KINASEcoord: 1..63
score: 6.0
NoneNo IPR availablePANTHERPTHR24423:SF517HISTIDINE KINASE 4coord: 1..63
score: 6.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.205380Cucumber (Chinese Long) v3cgycucB329
Cucsa.205380Cucumber (Chinese Long) v3cgycucB330
Cucsa.205380Watermelon (97103) v2cgywmbB382
Cucsa.205380Watermelon (97103) v2cgywmbB383
Cucsa.205380Watermelon (97103) v2cgywmbB384
Cucsa.205380Wax gourdcgywgoB429
Cucsa.205380Wax gourdcgywgoB430
Cucsa.205380Wax gourdcgywgoB432
Cucsa.205380Cucumber (Gy14) v1cgycgyB035
Cucsa.205380Cucurbita maxima (Rimu)cgycmaB0605
Cucsa.205380Cucurbita maxima (Rimu)cgycmaB0606
Cucsa.205380Cucurbita maxima (Rimu)cgycmaB0607
Cucsa.205380Cucurbita maxima (Rimu)cgycmaB0608
Cucsa.205380Cucurbita moschata (Rifu)cgycmoB0607
Cucsa.205380Cucurbita moschata (Rifu)cgycmoB0608
Cucsa.205380Cucurbita moschata (Rifu)cgycmoB0609
Cucsa.205380Cucurbita moschata (Rifu)cgycmoB0610
Cucsa.205380Wild cucumber (PI 183967)cgycpiB324
Cucsa.205380Wild cucumber (PI 183967)cgycpiB325
Cucsa.205380Cucumber (Chinese Long) v2cgycuB311
Cucsa.205380Cucumber (Chinese Long) v2cgycuB312
Cucsa.205380Melon (DHL92) v3.5.1cgymeB371
Cucsa.205380Melon (DHL92) v3.5.1cgymeB372
Cucsa.205380Watermelon (Charleston Gray)cgywcgB379
Cucsa.205380Watermelon (Charleston Gray)cgywcgB381
Cucsa.205380Watermelon (97103) v1cgywmB405
Cucsa.205380Watermelon (97103) v1cgywmB402
Cucsa.205380Watermelon (97103) v1cgywmB404
Cucsa.205380Cucurbita pepo (Zucchini)cgycpeB0579
Cucsa.205380Cucurbita pepo (Zucchini)cgycpeB0580
Cucsa.205380Cucurbita pepo (Zucchini)cgycpeB0581
Cucsa.205380Bottle gourd (USVL1VR-Ls)cgylsiB351
Cucsa.205380Bottle gourd (USVL1VR-Ls)cgylsiB352
Cucsa.205380Melon (DHL92) v3.6.1cgymedB368
Cucsa.205380Melon (DHL92) v3.6.1cgymedB369
Cucsa.205380Silver-seed gourdcarcgyB0132
Cucsa.205380Silver-seed gourdcarcgyB0640
Cucsa.205380Silver-seed gourdcarcgyB0863
Cucsa.205380Silver-seed gourdcarcgyB0932