Cucsa.192370.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCGAGGACATTTTGGTAGGGACATTTACGAACAGTTTGGATCCCATAATTAGAACAGAGGTTTTCGTGATGTGGGCCATGGGCCTGGAAGATATGATGGATGCAGCCCGGTTAGCTGAGGAAAAATTAGAAATGGCTCGGGCTTCTCAAGGCCCATATGCAAAAGATGGAAAACCAGCACAGAAACAAGGGGGAAATTTTTTtAGAAAACCCTACAACAAAAATCGTGACATTAGTTGAGAGGGTACCCACGCATTCATCTACTCCGATCACCTCGCAAGTTGTCGCATTTGGCAATGGGGTTCGGCGCGAAAATAATTTTCGAAGATGGACCGATTATGAGTTACAAGCAAGGCGTGACAAGGGACTTTGCTATCGGTGTGACAAACTGTTTGGTAAGGGACACCGCTGCAAAAACAAaGAGCTCCGCCTTTACTTGGTAGCGGTGATTTAGAGGATACAAAGATGGAAGACGTCGAGAACGAGAACGCAATGGTTGAAGTTAGTTCGGTTGTGGAATTATCCTTGAATTCGGTGGTGGGATTGACAGCTCCGGGTACGTTCAAGGTTAAAGGAACAATGGAAGATAGAGAGATAATAATCATGGTAGATTGTGGAGCAACCCACAATTTTATCTCACTCAAGCTGGTAGACGAATTGAAATTACCTATGACCGAAACGACCAACTACGACATCATTATGGGATCTAGGAAGGCAGTGCAAGGTCGAGGGATGTGCAAAGACATCACGGTAGGGCAACTTAGATATGGTACTGGGGATGCAGTGGCTCCGAAAGCAAGGTGCTACGACTGTCGATTGGAAAGCTTTAACCATGACATTCATTGTCGGGGACACTAATGTAATCTTGAAAGGAGATCCTTCACTGACCAGAGTGGAAATATCTTTGAAGGTGCTGGTTAAAATGTGGCAATCAGATGATCAAGAATTTTTAGTTGATTTCAGAGCTATGGGAATTTCCAAGACCAATAGGAT atggccgaggacattttggtagggacatttacgaacagtttggatcccataattagaacagaggttttcgtgatgtgggccatgggcctggaagatatgatggatgcagcccggttagctgaggaaaaattagaaatggctcgggcttctcaaggcccatatgcaaaagatggaaaaccagcacagaaacaagggggaaatttttttagaaaaccctacaacaaaaatcgtgacattaggacaccgctgcaaaaacaaagagctccgcctttacttggtagcggtgatttagaggatacaaagatggaagacgtcgagaacgagaacgcaatggttgaagttagttcggttgtggaattatccttgaattcggtggtgggattgacagctccgggtacgttcaaggttaaaggaacaatggaagatagagagataataatcatggtagattgtggagcaacccacaattttatctcactcaagctggtagacgaattgAAATTACCTATGACCGAAACGACCAACTACGACATCATTATGGGATCTAGGAAGGCAGTGCAAGGTCGAGGGATGTGCAAAGACATCACGtggctccgaaagcaaggtgctacgactgtcgattggaaagctttaaccatgacattcattgtcggggacactaatgtaatcttgaaaggagatccttcactgaccagagtggaaatatctttgaaggtgctggttaaaatgtggcaaTCAGATGATCAAGAATTTTTAGTTGATTTCAGAGCTATGGGAATTTCCAAGACCAATAGGAT ATGGCCGAGGACATTTTGGTAGGGACATTTACGAACAGTTTGGATCCCATAATTAGAACAGAGGTTTTCGTGATGTGGGCCATGGGCCTGGAAGATATGATGGATGCAGCCCGGTTAGCTGAGGAAAAATTAGAAATGGCTCGGGCTTCTCAAGGCCCATATGCAAAAGATGGAAAACCAGCACAGAAACAAGGGGGAAATTTTTTtAGAAAACCCTACAACAAAAATCGTGACATTAGGACACCGCTGCAAAAACAAaGAGCTCCGCCTTTACTTGGTAGCGGTGATTTAGAGGATACAAAGATGGAAGACGTCGAGAACGAGAACGCAATGGTTGAAGTTAGTTCGGTTGTGGAATTATCCTTGAATTCGGTGGTGGGATTGACAGCTCCGGGTACGTTCAAGGTTAAAGGAACAATGGAAGATAGAGAGATAATAATCATGGTAGATTGTGGAGCAACCCACAATTTTATCTCACTCAAGCTGGTAGACGAATTGAAATTACCTATGACCGAAACGACCAACTACGACATCATTATGGGATCTAGGAAGGCAGTGCAAGGTCGAGGGATGTGCAAAGACATCACGTGGCTCCGAAAGCAAGGTGCTACGACTGTCGATTGGAAAGCTTTAACCATGACATTCATTGTCGGGGACACTAATGTAATCTTGAAAGGAGATCCTTCACTGACCAGAGTGGAAATATCTTTGAAGGTGCTGGTTAAAATGTGGCAATCAGATGATCAAGAATTTTTAGTTGATTTCAGAGCTATGGGAATTTCCAAGACCAATAGGAT MAEDILVGTFTNSLDPIIRTEVFVMWAMGLEDMMDAARLAEEKLEMARASQGPYAKDGKPAQKQGGNFFRKPYNKNRDIRTPLQKQRAPPLLGSGDLEDTKMEDVENENAMVEVSSVVELSLNSVVGLTAPGTFKVKGTMEDREIIIMVDCGATHNFISLKLVDELKLPMTETTNYDIIMGSRKAVQGRGMCKDITWLRKQGATTVDWKALTMTFIVGDTNVILKGDPSLTRVEISLKVLVKMWQSDDQEFLVDFRAMGISKTNRX
BLAST of Cucsa.192370.1 vs. TrEMBL
Match: E5GC35_CUCME (Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 1.5e-63 Identity = 148/270 (54.81%), Postives = 167/270 (61.85%), Query Frame = 1
BLAST of Cucsa.192370.1 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 1.1e-47 Identity = 106/221 (47.96%), Postives = 143/221 (64.71%), Query Frame = 1
BLAST of Cucsa.192370.1 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 4.6e-09 Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 1
HSP 2 Score: 137.9 bits (346), Expect = 1.8e-29 Identity = 70/162 (43.21%), Postives = 100/162 (61.73%), Query Frame = 1
BLAST of Cucsa.192370.1 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1) HSP 1 Score: 137.5 bits (345), Expect = 2.4e-29 Identity = 72/167 (43.11%), Postives = 102/167 (61.08%), Query Frame = 1
BLAST of Cucsa.192370.1 vs. TrEMBL
Match: A0A087GH17_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G098300 PE=4 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 2.7e-25 Identity = 69/180 (38.33%), Postives = 97/180 (53.89%), Query Frame = 1
BLAST of Cucsa.192370.1 vs. TAIR10
Match: AT3G29750.1 (AT3G29750.1 Eukaryotic aspartyl protease family protein) HSP 1 Score: 52.8 bits (125), Expect = 3.9e-07 Identity = 38/128 (29.69%), Postives = 63/128 (49.22%), Query Frame = 1
BLAST of Cucsa.192370.1 vs. TAIR10
Match: AT3G30770.1 (AT3G30770.1 Eukaryotic aspartyl protease family protein) HSP 1 Score: 52.4 bits (124), Expect = 5.1e-07 Identity = 32/119 (26.89%), Postives = 60/119 (50.42%), Query Frame = 1
BLAST of Cucsa.192370.1 vs. NCBI nr
Match: gi|307136196|gb|ADN34034.1| (gypsy/ty3 element polyprotein [Cucumis melo subsp. melo]) HSP 1 Score: 251.1 bits (640), Expect = 2.1e-63 Identity = 148/270 (54.81%), Postives = 167/270 (61.85%), Query Frame = 1
BLAST of Cucsa.192370.1 vs. NCBI nr
Match: gi|307136175|gb|ADN34016.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]) HSP 1 Score: 198.4 bits (503), Expect = 1.6e-47 Identity = 106/221 (47.96%), Postives = 143/221 (64.71%), Query Frame = 1
BLAST of Cucsa.192370.1 vs. NCBI nr
Match: gi|307136175|gb|ADN34016.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]) HSP 1 Score: 70.1 bits (170), Expect = 6.7e-09 Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 1
HSP 2 Score: 161.0 bits (406), Expect = 2.9e-36 Identity = 92/233 (39.48%), Postives = 135/233 (57.94%), Query Frame = 1
BLAST of Cucsa.192370.1 vs. NCBI nr
Match: gi|147854459|emb|CAN78588.1| (hypothetical protein VITISV_043911 [Vitis vinifera]) HSP 1 Score: 137.5 bits (345), Expect = 3.4e-29 Identity = 72/167 (43.11%), Postives = 102/167 (61.08%), Query Frame = 1
BLAST of Cucsa.192370.1 vs. NCBI nr
Match: gi|731338584|ref|XP_010680400.1| (PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 126.3 bits (316), Expect = 7.8e-26 Identity = 75/203 (36.95%), Postives = 113/203 (55.67%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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