Cucsa.189580.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAATAAAAAAAAAAGGGAAAAAGAAAAAAAAAGAAAAAGAAAAAATCTCTCTTCGTGTAAACCAGAGTGGGAAGGTTGTTCCCGATTTCCTTCCCAACGCCTAGCAGATTTCTGATTTGGGGATTTATGGTTCTCTCTTCCAATCTCTAAAATCTCTACCTCTTTCCCTTTTCAATGGAATTCACCATCTCCGATGATTTGTTGGGTACTTTCGTCCCTATTTTCGTTTATTGGTTCTATTCTGGCTTATACCTTCTTCTTGGTTTCTTTGACAATTATCGATTGCACTCCAAGACAGATGAGGATGAGAAGAACTTGGTTTCTAAATCAACTGTTGTTCGGGGCGTTCTTTTTCAGCAATTCATTCAGGCTATTGTCGCCATCATCCTCTTTAAGGTGACCTTCTTTCTTTTTTTTNTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTTTTTTTTTTTTTTTTTTCTTTTACCTATTTTTTCAATTCTTAATCGTTGCTCTTTGTTAATTTTGTTGTTATTAAGCTCATTTCTGATTCTAATTGTTTGTGAAACTTACCCTAAAATATTTCAACTGAGATTGTATTTTGCTCTAGACTTTGCCGAAACTCTTTGTTTGATCTTCCTGAATTTTTCTTGGTTTATCACCTCTTTGTGGTACAGCTTGATTATAGTTTTACTAGACTGCATACAAATTCGTTGTGGGTTTTCTTGTTTCTGGACCTATTCAGTTTGACAAAAATCTAAATAATTACTTCTCTTCTGTTTACATGTGTTTTAAATTTTGATTTTGACAAGAACAGACTAGACACTGGATGGGGGGAGTGAAGAAGCAATGTCATTGTTGACCTATTATCAACTTTCGGTTTCTTATAATTACAACTATTGTATATCTTAAACAGGATTTGTTGCTTACTTTTGTTACTTTAGTTCGAATTGATGGAGCAAAATTTTAAACCTTTTCACATCAAAATAATTTAGATGGCAATTGAATTTTTTTTAATTTGGTTCAAGAATAAGAGGAGTTAATGATTCTAAGTTAAGGAAGTTGAAGGACAAAATCTGGTTATTAGCTTTTGACTGTAAGTATGTTTTGTTTCGAACACTACAAGGAAGGCTTTTGGTGAATACTTTTAACTTCAAGATAGACGTGAACAAAATTTTTGCATATTACCCCTTTTTCATAGCTAAATATTCTCTATGAGATGATTTTTTGGACTGGAAAGTTATGGTCTAAAACATGATATTTTTGTTTTCTTTGTAAATTAAATTCCATTTCCTTTAAGTATATTGACCTTTTGATTTGTCTATTCGTTTTAGGTTACATGTTTATTCACAAGTTTTAGGACCAATCCCCATTTGTGTTCTGCATCGGCACTCGGTTGGAAGTCACCAACTTGCAAACAAAAAAATCTTGAACTTCTGTTTAATTTTGTGGTGTTTTGCTTGTATTTCCTATAATGTTGTTGCCATTGCTTCTAATCCGTGAAGTTCCTTTTCTTTTTGAGTCCCATGCTAAACTAGTTTAGCAGTTGTTCGTGTGAAATATTGTAGACTGAACTAAAACTATTGTTATTATTAACCTCATCCAAGTGCTGTTAGATGAATTGTTCAGTTTGTCGTCCCTGTGGTTAAAGTGGCAAGTCCTGAACTCAAATGTTTTGAGCATACGAGCTCAAACTAAGATGCCACCTATTTGGGGCATCTTAGAAATCCTGGTTTTGTAATATTCTAAAGTTTAGTAGTTGTCTCGTGAGATTATTCCAAATGTATGTAAACTAACTCAGAGACTTAAGTTTTTGAAATAGAGAAAAGAAAAGGAATCAATGAGAACTTTGGCATAAGTCATTGATATTATGTGGGGTGTCTCTGCACTTACGTTCGAGTTTGGTCTCTGAATTTATAATTGCATTTTGTTATGTTCAGTTGACTGGAAATGATGATGGAAGCAATGCAGTTCCAAAGTCATGGCCAATGGTTGTTTTGCAATTTTTAACTGCGATGTTCATTCTAGACACGTGGCAGTACTTTGCACACCGATACATGCATCATAACAAGTTTCTGTACAGACACATTCATTCTCAGCACCATAGGCTTGTTGTTCCATATGCATTTGGGGCTTTGTATAATCATCCAGTGGAAGGTCTACTGCTTGACACGATTGGTGGGGCGTTGTCATTTTTAGCATCTGGTATGACTCCTAGAATCTCCATCTTCTTCTTTTCCTTTGCCACTATTAAGACGGTAGACGATCACTGTGGATTATGGCTGCCTGGTAATCTCTTCCACATCTTATTTCGCAACAATACTGCATATCACGACGTCCACCATCAACTATACGGCAGCAAGTTTAATTTTTCACAGCCTTTCTTTGTTACATGGGATAGAATACTTGGTACCTATATGCCTTACTCCTTGGAGAAGAGAGCAAGCGGCGGCTTTGAAGCACGACCAAAGATTGAATAAATACCGTAAGCAGCAATCAGTTGCTTATATTATATTATTTGTATCCCACAACTATATGATTTGTATATTACTCCTATTGTTGCCATTTTTATACTTTTTCCCCCATTTTCCCTCTCTTCCCTAACATAGATTTGAAACATGAGTTCAGATGAGCTAGGTTGTGTTTTGATATATATATATTTTT aaataaaaaaaaaagggaaaaagaaaaaaaaagaaaaagaaaaaaTCTCTCTTCGTGTAAACCAGAGTGGGAAGGTTGTTCCCGATTTCCTTCCCAACGCCTAGCAGATTTCTGATTTGGGGATTTATGGTTCTCTCTTCCAATCTCTAAAATCTCTACCTCTTTCCCTTTTCAATGGAATTCACCATCTCCGATGATTTGTTGGGTACTTTCGTCCCTATTTTCGTTTATTGGTTCTATTCTGGCTTATACCTTCTTCTTGGTTTCTTTGACAATTATCGATTGCACTCCAAGACAGATGAGGATGAGAAGAACTTGGTTTCTAAATCAACTGTTGTTCGGGGCGTTCTTTTTCAGCAATTCATTCAGGCTATTGTCGCCATCATCCTCTTTAAGTTGACTGGAAATGATGATGGAAGCAATGCAGTTCCAAAGTCATGGCCAATGGTTGTTTTGCAATTTTTAACTGCGATGTTCATTCTAGACACGTGGCAGTACTTTGCACACCGATACATGCATCATAACAAGTTTCTGTACAGACACATTCATTCTCAGCACCATAGGCTTGTTGTTCCATATGCATTTGGGGCTTTGTATAATCATCCAGTGGAAGGTCTACTGCTTGACACGATTGGTGGGGCGTTGTCATTTTTAGCATCTGGTATGACTCCTAGAATCTCCATCTTCTTCTTTTCCTTTGCCACTATTAAGACGGTAGACGATCACTGTGGATTATGGCTGCCTGGTAATCTCTTCCACATCTTATTTCGCAACAATACTGCATATCACGACGTCCACCATCAACTATACGGCAGCAAGTTTAATTTTTCACAGCCTTTCTTTGTTACATGGGATAGAATACTTGGTACCTATATGCCTTACTCCTTGGAGAAGAGAGCAAGCGGCGGCTTTGAAGCACGACCAAAGATTGAATAAATACCGTAAGCAGCAATCAGTTGCTTATATTATATTATTTGTATCCCACAACTATATGATTTGTATATTACTCCTATTGTTGCCATTTTTATACTTTTTCCCCCATTTTCCCTCTCTTCCCTAACATAGATTTGAAACATGAGTTCAGATGAGCTAGGTTGTGTTTTGatatatatatattttt ATGGAATTCACCATCTCCGATGATTTGTTGGGTACTTTCGTCCCTATTTTCGTTTATTGGTTCTATTCTGGCTTATACCTTCTTCTTGGTTTCTTTGACAATTATCGATTGCACTCCAAGACAGATGAGGATGAGAAGAACTTGGTTTCTAAATCAACTGTTGTTCGGGGCGTTCTTTTTCAGCAATTCATTCAGGCTATTGTCGCCATCATCCTCTTTAAGTTGACTGGAAATGATGATGGAAGCAATGCAGTTCCAAAGTCATGGCCAATGGTTGTTTTGCAATTTTTAACTGCGATGTTCATTCTAGACACGTGGCAGTACTTTGCACACCGATACATGCATCATAACAAGTTTCTGTACAGACACATTCATTCTCAGCACCATAGGCTTGTTGTTCCATATGCATTTGGGGCTTTGTATAATCATCCAGTGGAAGGTCTACTGCTTGACACGATTGGTGGGGCGTTGTCATTTTTAGCATCTGGTATGACTCCTAGAATCTCCATCTTCTTCTTTTCCTTTGCCACTATTAAGACGGTAGACGATCACTGTGGATTATGGCTGCCTGGTAATCTCTTCCACATCTTATTTCGCAACAATACTGCATATCACGACGTCCACCATCAACTATACGGCAGCAAGTTTAATTTTTCACAGCCTTTCTTTGTTACATGGGATAGAATACTTGGTACCTATATGCCTTACTCCTTGGAGAAGAGAGCAAGCGGCGGCTTTGAAGCACGACCAAAGATTGAATAA MEFTISDDLLGTFVPIFVYWFYSGLYLLLGFFDNYRLHSKTDEDEKNLVSKSTVVRGVLFQQFIQAIVAIILFKLTGNDDGSNAVPKSWPMVVLQFLTAMFILDTWQYFAHRYMHHNKFLYRHIHSQHHRLVVPYAFGALYNHPVEGLLLDTIGGALSFLASGMTPRISIFFFSFATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQLYGSKFNFSQPFFVTWDRILGTYMPYSLEKRASGGFEARPKIE*
BLAST of Cucsa.189580.1 vs. Swiss-Prot
Match: SBH1_ARATH (Sphinganine C4-monooxygenase 1 OS=Arabidopsis thaliana GN=SBH1 PE=1 SV=1) HSP 1 Score: 409.1 bits (1050), Expect = 3.6e-113 Identity = 188/254 (74.02%), Postives = 220/254 (86.61%), Query Frame = 1
BLAST of Cucsa.189580.1 vs. Swiss-Prot
Match: SBH2_ARATH (Sphinganine C4-monooxygenase 2 OS=Arabidopsis thaliana GN=SBH2 PE=1 SV=1) HSP 1 Score: 408.3 bits (1048), Expect = 6.2e-113 Identity = 188/251 (74.90%), Postives = 216/251 (86.06%), Query Frame = 1
BLAST of Cucsa.189580.1 vs. Swiss-Prot
Match: SUR2_SCHPO (Sphingolipid C4-hydroxylase sur2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sur2 PE=3 SV=1) HSP 1 Score: 221.5 bits (563), Expect = 1.1e-56 Identity = 109/253 (43.08%), Postives = 149/253 (58.89%), Query Frame = 1
BLAST of Cucsa.189580.1 vs. Swiss-Prot
Match: SUR2_YEAST (Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SUR2 PE=1 SV=1) HSP 1 Score: 199.5 bits (506), Expect = 4.3e-50 Identity = 102/252 (40.48%), Postives = 142/252 (56.35%), Query Frame = 1
BLAST of Cucsa.189580.1 vs. Swiss-Prot
Match: MSMOA_DICDI (Putative methylsterol monooxygenase DDB_G0270946 OS=Dictyostelium discoideum GN=DDB_G0270946 PE=3 SV=2) HSP 1 Score: 72.8 bits (177), Expect = 6.1e-12 Identity = 61/232 (26.29%), Postives = 105/232 (45.26%), Query Frame = 1
BLAST of Cucsa.189580.1 vs. TrEMBL
Match: A0A0A0LJX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G101090 PE=3 SV=1) HSP 1 Score: 446.8 bits (1148), Expect = 1.7e-122 Identity = 222/253 (87.75%), Postives = 222/253 (87.75%), Query Frame = 1
BLAST of Cucsa.189580.1 vs. TrEMBL
Match: M5XMN9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010258mg PE=3 SV=1) HSP 1 Score: 434.5 bits (1116), Expect = 8.9e-119 Identity = 200/251 (79.68%), Postives = 223/251 (88.84%), Query Frame = 1
BLAST of Cucsa.189580.1 vs. TrEMBL
Match: A0A0A0KQL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G605020 PE=3 SV=1) HSP 1 Score: 434.5 bits (1116), Expect = 8.9e-119 Identity = 202/251 (80.48%), Postives = 220/251 (87.65%), Query Frame = 1
BLAST of Cucsa.189580.1 vs. TrEMBL
Match: B9S8V4_RICCO (Sur2 hydroxylase/desaturase, putative OS=Ricinus communis GN=RCOM_0836090 PE=3 SV=1) HSP 1 Score: 434.1 bits (1115), Expect = 1.2e-118 Identity = 204/255 (80.00%), Postives = 227/255 (89.02%), Query Frame = 1
BLAST of Cucsa.189580.1 vs. TrEMBL
Match: A0A067LAS4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15596 PE=3 SV=1) HSP 1 Score: 433.3 bits (1113), Expect = 2.0e-118 Identity = 202/254 (79.53%), Postives = 224/254 (88.19%), Query Frame = 1
BLAST of Cucsa.189580.1 vs. TAIR10
Match: AT1G69640.1 (AT1G69640.1 sphingoid base hydroxylase 1) HSP 1 Score: 409.1 bits (1050), Expect = 2.0e-114 Identity = 188/254 (74.02%), Postives = 220/254 (86.61%), Query Frame = 1
BLAST of Cucsa.189580.1 vs. TAIR10
Match: AT1G14290.1 (AT1G14290.1 sphingoid base hydroxylase 2) HSP 1 Score: 408.3 bits (1048), Expect = 3.5e-114 Identity = 188/251 (74.90%), Postives = 216/251 (86.06%), Query Frame = 1
BLAST of Cucsa.189580.1 vs. TAIR10
Match: AT3G02590.1 (AT3G02590.1 Fatty acid hydroxylase superfamily protein) HSP 1 Score: 52.0 bits (123), Expect = 6.3e-07 Identity = 39/157 (24.84%), Postives = 71/157 (45.22%), Query Frame = 1
BLAST of Cucsa.189580.1 vs. NCBI nr
Match: gi|449442297|ref|XP_004138918.1| (PREDICTED: sphinganine C(4)-monooxygenase 1-like [Cucumis sativus]) HSP 1 Score: 530.0 bits (1364), Expect = 2.2e-147 Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 1
BLAST of Cucsa.189580.1 vs. NCBI nr
Match: gi|659082180|ref|XP_008441706.1| (PREDICTED: sphinganine C(4)-monooxygenase 1-like [Cucumis melo]) HSP 1 Score: 525.8 bits (1353), Expect = 4.2e-146 Identity = 247/253 (97.63%), Postives = 252/253 (99.60%), Query Frame = 1
BLAST of Cucsa.189580.1 vs. NCBI nr
Match: gi|700206260|gb|KGN61379.1| (hypothetical protein Csa_2G101090 [Cucumis sativus]) HSP 1 Score: 446.8 bits (1148), Expect = 2.5e-122 Identity = 222/253 (87.75%), Postives = 222/253 (87.75%), Query Frame = 1
BLAST of Cucsa.189580.1 vs. NCBI nr
Match: gi|449435354|ref|XP_004135460.1| (PREDICTED: sphinganine C(4)-monooxygenase 2 [Cucumis sativus]) HSP 1 Score: 434.5 bits (1116), Expect = 1.3e-118 Identity = 202/251 (80.48%), Postives = 220/251 (87.65%), Query Frame = 1
BLAST of Cucsa.189580.1 vs. NCBI nr
Match: gi|596288798|ref|XP_007225995.1| (hypothetical protein PRUPE_ppa010258mg [Prunus persica]) HSP 1 Score: 434.5 bits (1116), Expect = 1.3e-118 Identity = 200/251 (79.68%), Postives = 223/251 (88.84%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
|