Cucsa.181910.4 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.181910.4
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Dormancy/auxin associated family protein
Location	scaffold01251 : 119327 .. 121788 (+)
Sequence length	1891

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACTTCACACCGTTCTCCCCTCTCCCTTCTTCTCTGTAAACCCTTCCGTTGATTGATCCCAATTTCCTCTCTCTACCTTCCGCCGCGAATTACTCTTAAGTCCGCCCTCGCCGTCGTAGCGTTGTTGGCGATGGGACTATTGGATCAGCTCTGGGATGACACGCTTGCCGGACCGACCCCGGATTCCGGCCTCGGCAAGCTCAGGAAGCACCCATCTCTCACTTCCCGATCCGCCGCCGTGAAGGGTATGCCACAGCGGACCCATAAGTTCTAACCATTCATTTCATTAAAAAGTTTCGTTCTTTTTTtAATACCAAACAGTTTAGTAAGTACTTGACCTTAACAACTAAATATCTGATCTCTTACTTTCTAAAACTTTCAAGATTTGTAACAATTTAGTGACTTAATATGCTATGTTTTATAATTTAAATACAAATACTGTTTATTTTCATATTGCTTACTGGTTTTTACACTTTACACTCCTCTCCGATCCCCTTTTCCTCTAAGACTGTTATATAATTCAGATTAAGTTGGTCCATAGTTCATTACAAACCCTCATACAATAAACTATGGACCCCATATTACTCTAAAACAACAAACTATGGACAATAATTACTAACTATATGTCATGACAGTCCGGACTTAATTGTTATACATTTAAAAGTCCAGTTACTAGCAGAACGATTATTATCTTGGGACGTTGAGTTGACTAGCTATAAGAAGCTCTAACAAAAAACTAAAAGAAAGAAGAGAGCTAGATTTGAAACAATAATAATACGAAAAGTTTAATTATCTCTGTTGCTAATTTGGGAGCAGAATCCTCCAATGGGAAGAGGTACGAGGAAGGAGTAGTAATGTCGTCATCGTCCTCGGAGGATAGTGTGAAAGTTTCTCGGAGGATTATGATCGTAAAGCCACCTGGTGGTTACCAGTATGGTTCACCGCCGGTGTCGCCTGCCGCCTCTTCCACTCCACCGTCATCTCCTTTTTCCGGTAAGTTTCCCAACCACCGTTCCATGATATGCCACTCTAAGTTAAGTATATGTGTGGCTTTTGATTACGTCTTTTTGTGGGGTTTGTGAGCTGTGCCCTTCTCATTGGGCATTCCATTAATCCTAAGTTCTAATAATAATTTTAATTCAATATGTATTGATTATTGTTATTATGAAATGACTATTCTACCCCTCCTTTGTACCTACAAATAATAATGCATTATTCCCAAATTGCCCATACTCTCTTTTTTtGATGTGAAACAAAATATTTCTTTCAATTTCACTCCTACTATGTTTAGCTATGTATATATATACAAACTTTATTCATCAAATTAAAACTTGCCCTAACATGGATTATTTTCTTTTTtCTTTTTtGTTAACTTCAATAATTATAGTCTATAGTGTGAACCATTAATTTTTGAGGTGGTAATTATTAGGGGAAAAAAaTTAAACTATTGAAATACAAATTGTTTAAATTAGTATGTTATAGGAAATATGAGTGTATTATCTAAAAGAAAGAGGGAGATATTGTGTTTTCTTTAAGCATTTTATTTTTGTATGCATTTGTCTTGTAATTTTAATATGTAGGGATAGGGGTTGAGATTTGATTCTTGATATATATTTGTTTGATCGGTCATGAAGGTAATTATTTTTAATAAGTTGAATTGCATCTTAGTGGATCTTGATAAGGGTGGTTTCTTCTTTTTCAATGTGGGGACGAATCTATTTTGTATTTAATGAATCTTTTAATTATGCCCACAAGGCTACTTGATGTTGATTTTTCTAGACATAGATTCATCTACTGTAATTATTTGATGAAAGTAATAAATGTGATTTAAAAAACGATTATGCAACAAGTCAATATTAACATGGTTGGTTCGGTTGTGTTATTACTTACGGAGGTAGAGAATCATTTAGATTTCGAAGAAGATCGACATCGGACGCTTATGGGAAGACGACAAGTGAAGTCGGAGCTCGGACTCCTACTTCTCCTTTTGACATGTGAGATATGACAGTGATATCAACTCGATCATAATCTTCGGCCCCAAAACTTTGGATGAGATCAATGACGAGTGAAAATCCTTGTATCTTTTAGGGTTTGCTTAATAATGTCTATAGCTTTTTGTCGAGAAACGTTGAAAGACTTTAGTGAGCCCGTTCGAATTACATAGGTGTGCTTTGGTCATATAATAGATGTGTAGGTTTGTCGTCCCGTGGCCTGCTGAGAATAATTATAGGAAAGGATTTTGTTTGTGTGGTCTTCATGTTCTTTTGTGTATGGTTTGTAGTTTTATCACTTGTAGTAATATCTCTCAGTTGACAATGATGGTGTCTTTACTTTGTGTAAAAGAGAGACCAACATTTTCCTTTTACCTATTTTTTCTGTTTAATTCATCATAATTTTGAGTTATAGTTTAAAAGAATTAATGAGTACCAAAGAGATCTATATATACGTGTTAAAGAATCAA

mRNA sequence

TAACTTCACACCGTTCTCCCCTCTCCCTTCTTCTCTGTAAACCCTTCCGTTGATTGATCCCAATTTCCTCTCTCTACCTTCCGCCGCGAATTACTCTTAAGTCCGCCCTCGCCGTCGTAGCGTTGTTGGCGATGGGACTATTGGATCAGCTCTGGGATGACACGCTTGCCGGACCGACCCCGGATTCCGGCCTCGGCAAGCTCAGGAAGCACCCATCTCTCACTTCCCGATCCGCCGCCGTGAAGGAATCCTCCAATGGGAAGAGGTACGAGGAAGGAGTAGTAATGTCGTCATCGTCCTCGGAGGATAGTGTGAAAGTTTCTCGGAGGATTATGATCGTAAAGCCACCTGGTGGTTACCAGTATGGTTCACCGCCGGTGTCGCCTGCCGCCTCTTCCACTCCACCGTCATCTCCTTTTTCCGGTAAGTTTCCCAACCACCGTTCCATGATATGCCACTCTAAGTTAAGTATATGTGTGGCTTTTGATTACGTCTTTTTGTGGGGTTTGTGAGCTGTGCCCTTCTCATTGGGCATTCCATTAATCCTAAGTTCTAATAATAATTTTAATTCAATATGTATTGATTATTGTTATTATGAAATGACTATTCTACCCCTCCTTTGTACCTACAAATAATAATGCATTATTCCCAAATTGCCCATACTCTCTTTTTTTGATGTGAAACAAAATATTTCTTTCAATTTCACTCCTACTATGTTTAGCTATGTATATATATACAAACTTTATTCATCAAATTAAAACTTGCCCTAACATGGATTATTTTCTTTTTTCTTTTTTGTTAACTTCAATAATTATAGTCTATAGTGTGAACCATTAATTTTTGAGGTGGTAATTATTAGGGGAAAAAAATTAAACTATTGAAATACAAATTGTTTAAATTAGTATGTTATAGGAAATATGAGTGTATTATCTAAAAGAAAGAGGGAGATATTGTGTTTTCTTTAAGCATTTTATTTTTGTATGCATTTGTCTTGTAATTTTAATATGTAGGGATAGGGGTTGAGATTTGATTCTTGATATATATTTGTTTGATCGGTCATGAAGGTAATTATTTTTAATAAGTTGAATTGCATCTTAGTGGATCTTGATAAGGGTGGTTTCTTCTTTTTCAATGTGGGGACGAATCTATTTTGTATTTAATGAATCTTTTAATTATGCCCACAAGGCTACTTGATGTTGATTTTTCTAGACATAGATTCATCTACTGTAATTATTTGATGAAAGTAATAAATGTGATTTAAAAAACGATTATGCAACAAGTCAATATTAACATGGTTGGTTCGGTTGTGTTATTACTTACGGAGGTAGAGAATCATTTAGATTTCGAAGAAGATCGACATCGGACGCTTATGGGAAGACGACAAGTGAAGTCGGAGCTCGGACTCCTACTTCTCCTTTTGACATGTGAGATATGACAGTGATATCAACTCGATCATAATCTTCGGCCCCAAAACTTTGGATGAGATCAATGACGAGTGAAAATCCTTGTATCTTTTAGGGTTTGCTTAATAATGTCTATAGCTTTTTGTCGAGAAACGTTGAAAGACTTTAGTGAGCCCGTTCGAATTACATAGGTGTGCTTTGGTCATATAATAGATGTGTAGGTTTGTCGTCCCGTGGCCTGCTGAGAATAATTATAGGAAAGGATTTTGTTTGTGTGGTCTTCATGTTCTTTTGTGTATGGTTTGTAGTTTTATCACTTGTAGTAATATCTCTCAGTTGACAATGATGGTGTCTTTACTTTGTGTAAAAGAGAGACCAACATTTTCCTTTTACCTATTTTTTCTGTTTAATTCATCATAATTTTGAGTTATAGTTTAAAAGAATTAATGAGTACCAAAGAGATCTATATATACGTGTTAAAGAATCAA

Coding sequence (CDS)

ATGGGACTATTGGATCAGCTCTGGGATGACACGCTTGCCGGACCGACCCCGGATTCCGGCCTCGGCAAGCTCAGGAAGCACCCATCTCTCACTTCCCGATCCGCCGCCGTGAAGGAATCCTCCAATGGGAAGAGGTACGAGGAAGGAGTAGTAATGTCGTCATCGTCCTCGGAGGATAGTGTGAAAGTTTCTCGGAGGATTATGATCGTAAAGCCACCTGGTGGTTACCAGTATGGTTCACCGCCGGTGTCGCCTGCCGCCTCTTCCACTCCACCGTCATCTCCTTTTTCCGGTAAGTTTCCCAACCACCGTTCCATGATATGCCACTCTAAGTTAAGTATATGTGTGGCTTTTGATTACGTCTTTTTGTGGGGTTTGTGA

Protein sequence

MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDSVKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSGKFPNHRSMICHSKLSICVAFDYVFLWGL*

Homology

[Close]

BLAST of Cucsa.181910.4 vs. Swiss-Prot
Match: DRMH3_ARATH (Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana GN=At1g56220 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.4e-19
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = 1


Query: 1  MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAA---VKESSNGKRYEEGVVMSSSSS 60
          MGLLD LWDDT+AGP P++GLGKLRKH + + R ++     E+ + + Y E      S  
Sbjct: 1  MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGE-----DSLP 60

Query: 61 EDSVKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFS 98
          E++VKV+R IMI+KPP GYQ  S P SP A STPP SPFS
Sbjct: 61 EEAVKVTRSIMIIKPP-GYQGSSAPASP-AGSTPPLSPFS 93

[Close]

BLAST of Cucsa.181910.4 vs. Swiss-Prot
Match: DRMH4_ARATH (Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana GN=At1g54070 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-10
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60
           MG L +LWD+T+AGPTPD+GLGKLRKH SL++                  V SS  S  S
Sbjct: 1   MGFLHKLWDETVAGPTPDNGLGKLRKHDSLST------------------VRSSPPSLSS 60

Query: 61  VKVSRRIMIVK----PPGGYQYGSPPVSPAASSTPPSSPFSGKFP 102
            +V+R IM+ K      G  +    P SP  SS+ P +P +   P
Sbjct: 61  DQVTRSIMVTKGNNNVRGLRKLKMDPDSPTCSSSNPGTPLTPGTP 87

[Close]

BLAST of Cucsa.181910.4 vs. TrEMBL
Match: A0A0A0LWE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569400 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.2e-48
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60
           MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS
Sbjct: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60

Query: 61  VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSGK 100
           VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSG+
Sbjct: 61  VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSGR 99

[Close]

BLAST of Cucsa.181910.4 vs. TrEMBL
Match: B9RFD0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1433630 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-23
Identity = 62/98 (63.27%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 1  MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60
          MGLLDQLWDDT+AGP PD+GLGKLRKH +   RS   KES      + G  +   +SE+ 
Sbjct: 1  MGLLDQLWDDTVAGPPPDNGLGKLRKHSTFNFRSTTGKESDG----QNGRSLGDDASEEV 60

Query: 61 VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSG 99
           KV+R IMIVKPP GYQ+GSPPVSP A STPP SPFSG
Sbjct: 61 TKVTRSIMIVKPP-GYQFGSPPVSP-AGSTPPVSPFSG 92

[Close]

BLAST of Cucsa.181910.4 vs. TrEMBL
Match: A0A061FAK4_THECC (Dormancy/auxin associated family protein isoform 4 OS=Theobroma cacao GN=TCM_026669 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-23
Identity = 62/103 (60.19%), Postives = 73/103 (70.87%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60
           MGLLDQLWDDT+AGP PD+GLGKLRKH + T R ++ KES  G     G      +SE+ 
Sbjct: 1   MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPSSAKESDGGSVRSYG----DETSEEP 60

Query: 61  VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSGKFPNH 104
            +V+R IMIVKPP GYQ GSPP+SP A STPP SPFSG   +H
Sbjct: 61  TRVTRSIMIVKPP-GYQNGSPPISP-AGSTPPVSPFSGNNISH 97

[Close]

BLAST of Cucsa.181910.4 vs. TrEMBL
Match: A0A061F398_THECC (Drm3-like protein isoform 1 OS=Theobroma cacao GN=TCM_026669 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.5e-23
Identity = 61/98 (62.24%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 1  MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60
          MGLLDQLWDDT+AGP PD+GLGKLRKH + T R ++ KES  G     G      +SE+ 
Sbjct: 1  MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPSSAKESDGGSVRSYG----DETSEEP 60

Query: 61 VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSG 99
           +V+R IMIVKPP GYQ GSPP+SP A STPP SPFSG
Sbjct: 61 TRVTRSIMIVKPP-GYQNGSPPISP-AGSTPPVSPFSG 92

[Close]

BLAST of Cucsa.181910.4 vs. TrEMBL
Match: A0A061F3N6_THECC (Dormancy/auxin associated family protein isoform 3 OS=Theobroma cacao GN=TCM_026669 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.6e-23
Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60
           MGLLDQLWDDT+AGP PD+GLGKLRKH + T R ++ KES  G     G      +SE+ 
Sbjct: 1   MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPSSAKESDGGSVRSYG----DETSEEP 60

Query: 61  VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSGKFPNHRSMIC 109
            +V+R IMIVKPP GYQ GSPP+SP A STPP SPFS        ++C
Sbjct: 61  TRVTRSIMIVKPP-GYQNGSPPISP-AGSTPPVSPFSDILSRKGGLLC 102

[Close]

BLAST of Cucsa.181910.4 vs. TAIR10
Match: AT1G56220.3 (AT1G56220.3 Dormancy/auxin associated family protein)

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-20
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = 1


Query: 1  MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAA---VKESSNGKRYEEGVVMSSSSS 60
          MGLLD LWDDT+AGP P++GLGKLRKH + + R ++     E+ + + Y E      S  
Sbjct: 1  MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGE-----DSLP 60

Query: 61 EDSVKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFS 98
          E++VKV+R IMI+KPP GYQ  S P SP A STPP SPFS
Sbjct: 61 EEAVKVTRSIMIIKPP-GYQGSSAPASP-AGSTPPLSPFS 93

[Close]

BLAST of Cucsa.181910.4 vs. TAIR10
Match: AT1G54070.1 (AT1G54070.1 Dormancy/auxin associated family protein)

HSP 1 Score: 65.1 bits (157), Expect = 3.6e-11
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60
           MG L +LWD+T+AGPTPD+GLGKLRKH SL++                  V SS  S  S
Sbjct: 1   MGFLHKLWDETVAGPTPDNGLGKLRKHDSLST------------------VRSSPPSLSS 60

Query: 61  VKVSRRIMIVK----PPGGYQYGSPPVSPAASSTPPSSPFSGKFP 102
            +V+R IM+ K      G  +    P SP  SS+ P +P +   P
Sbjct: 61  DQVTRSIMVTKGNNNVRGLRKLKMDPDSPTCSSSNPGTPLTPGTP 87

[Close]

BLAST of Cucsa.181910.4 vs. NCBI nr
Match: gi|449435651|ref|XP_004135608.1| (PREDICTED: uncharacterized protein LOC101205077 isoform X1 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 4.5e-48
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60
           MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS
Sbjct: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60

Query: 61  VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSGK 100
           VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSG+
Sbjct: 61  VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSGR 99

[Close]

BLAST of Cucsa.181910.4 vs. NCBI nr
Match: gi|778662447|ref|XP_011659889.1| (PREDICTED: uncharacterized protein LOC101205077 isoform X2 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 2.9e-47
Identity = 99/108 (91.67%), Postives = 103/108 (95.37%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60
           MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS
Sbjct: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60

Query: 61  VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSG-KFPNHRSMI 108
           VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFS  +   HR+++
Sbjct: 61  VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSDFEEDRHRTLM 108

[Close]

BLAST of Cucsa.181910.4 vs. NCBI nr
Match: gi|659099501|ref|XP_008450631.1| (PREDICTED: uncharacterized protein LOC103492161 [Cucumis melo])

HSP 1 Score: 179.9 bits (455), Expect = 2.8e-42
Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSS--- 60
           MGLLDQLWDDTLAGPTPDSGLGKLRKHPS TSRSAA KES+NGKRYEEG+++SSSSS   
Sbjct: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSFTSRSAAAKESNNGKRYEEGIMLSSSSSAAA 60

Query: 61  --EDSVKVSRRIMIVKPPGGYQYG-SPPVSPAASSTPPSSPFSGK 100
             ED VKVSRRIMIVKPPGGYQYG SPPVSPAASSTPPSSPFSG+
Sbjct: 61  AAEDGVKVSRRIMIVKPPGGYQYGSSPPVSPAASSTPPSSPFSGR 105

[Close]

BLAST of Cucsa.181910.4 vs. NCBI nr
Match: gi|1000981107|ref|XP_015570609.1| (PREDICTED: uncharacterized protein LOC8287105 isoform X3 [Ricinus communis])

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-23
Identity = 62/99 (62.63%), Postives = 72/99 (72.73%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60
           MGLLDQLWDDT+AGP PD+GLGKLRKH +   RS   KES      + G  +   +SE+ 
Sbjct: 1   MGLLDQLWDDTVAGPPPDNGLGKLRKHSTFNFRSTTGKESDG----QNGRSLGDDASEEV 60

Query: 61  VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSGK 100
            KV+R IMIVKPP GYQ+GSPPVSP A STPP SPFSG+
Sbjct: 61  TKVTRSIMIVKPP-GYQFGSPPVSP-AGSTPPVSPFSGR 93

[Close]

BLAST of Cucsa.181910.4 vs. NCBI nr
Match: gi|1000981103|ref|XP_015570607.1| (PREDICTED: uncharacterized protein LOC8287105 isoform X1 [Ricinus communis])

HSP 1 Score: 117.1 bits (292), Expect = 2.3e-23
Identity = 62/98 (63.27%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 1  MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60
          MGLLDQLWDDT+AGP PD+GLGKLRKH +   RS   KES      + G  +   +SE+ 
Sbjct: 1  MGLLDQLWDDTVAGPPPDNGLGKLRKHSTFNFRSTTGKESDG----QNGRSLGDDASEEV 60

Query: 61 VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSG 99
           KV+R IMIVKPP GYQ+GSPPVSP A STPP SPFSG
Sbjct: 61 TKVTRSIMIVKPP-GYQFGSPPVSP-AGSTPPVSPFSG 92

The following BLAST results are available for this feature:

BLAST of Cucsa.181910.4 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DRMH3_ARATH	3.4e-19	54.00	Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana GN=At1g56220 PE=1 ...	[more]
DRMH4_ARATH	6.4e-10	40.00	Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana GN=At1g54070 PE=3 ...	[more]

BLAST of Cucsa.181910.4 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWE4_CUCSA	3.2e-48	98.99	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569400 PE=4 SV=1	[more]
B9RFD0_RICCO	1.6e-23	63.27	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1433630 PE=4 SV=1	[more]
A0A061FAK4_THECC	1.6e-23	60.19	Dormancy/auxin associated family protein isoform 4 OS=Theobroma cacao GN=TCM_026...	[more]
A0A061F398_THECC	3.5e-23	62.24	Drm3-like protein isoform 1 OS=Theobroma cacao GN=TCM_026669 PE=4 SV=1	[more]
A0A061F3N6_THECC	4.6e-23	56.48	Dormancy/auxin associated family protein isoform 3 OS=Theobroma cacao GN=TCM_026...	[more]

BLAST of Cucsa.181910.4 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G56220.3	1.9e-20	54.00	Dormancy/auxin associated family protein	[more]
AT1G54070.1	3.6e-11	40.00	Dormancy/auxin associated family protein	[more]

BLAST of Cucsa.181910.4 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435651\|ref\|XP_004135608.1\|	4.5e-48	98.99	PREDICTED: uncharacterized protein LOC101205077 isoform X1 [Cucumis sativus]	[more]
gi\|778662447\|ref\|XP_011659889.1\|	2.9e-47	91.67	PREDICTED: uncharacterized protein LOC101205077 isoform X2 [Cucumis sativus]	[more]
gi\|659099501\|ref\|XP_008450631.1\|	2.8e-42	86.67	PREDICTED: uncharacterized protein LOC103492161 [Cucumis melo]	[more]
gi\|1000981107\|ref\|XP_015570609.1\|	1.3e-23	62.63	PREDICTED: uncharacterized protein LOC8287105 isoform X3 [Ricinus communis]	[more]
gi\|1000981103\|ref\|XP_015570607.1\|	2.3e-23	63.27	PREDICTED: uncharacterized protein LOC8287105 isoform X1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008406	DRM/ARP

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.181910	Cucsa.181910	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.181910.4	Cucsa.181910.4-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.181910.4.five_prime_UTR.1	Cucsa.181910.4.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.181910.4.CDS.1	Cucsa.181910.4.CDS.1	CDS
Cucsa.181910.4.CDS.2	Cucsa.181910.4.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.181910.4.three_prime_UTR.1	Cucsa.181910.4.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008406	Dormancy/auxin associated protein	PFAM	PF05564	Auxin_repressed	coord: 7..63 score: 2.
None	No IPR available	PANTHER	PTHR33565	FAMILY NOT NAMED	coord: 2..99 score: 3.8
None	No IPR available	PANTHER	PTHR33565:SF1	DORMANCY/AUXIN ASSOCIATED PROTEIN	coord: 2..99 score: 3.8