Cucsa.178810.5 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.178810.5
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	General transcription factor IIH subunit 3
Location	scaffold01227 : 1164629 .. 1169022 (+)
Sequence length	1482

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCCATTCTGAAGCAGCCATGGCTTCAGCTCCTTCGAAGCTTTACGCAGGTTCTCCTCCAATCCCTTTCTCCTTCCTTATGGGCACTCGGGTACAACTATCGAAATTGCAGTGGCTTATTCGTTTTTTtGATCTTTGATTGTGTTGTTGCAGATGATGTTAGCCTTTTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTGCTCTTCCGTTCTCCAAGTTTCTGTCTCATGTAATTGATAAATTATCTCCTTTCCTGTGAACCATTCTACCCAGTAGGTTTTTCTGATAGAACTGTAATGAACATTAGCATTTCCTTTTTCTTTCTGTTTTGGGTGTATAGGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAACCAACTTAATGAGGTTGTGGTTATTGGTACTGGATATGCTTCATGCAAGTATTTATACAACTCGTCTTCTTACTCAAATCATGGCCTTGAAGATGGTAGAATGCCTGCACTTTGTACTCGTTTATTGAAGAATTTGGAGGAGTTCGTGATTGGGGATGAGCAGTCCATCAAGGAAGATCCCAAAGGAGGGACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCCTTGTGTTGTATCCTTCCTTGTTGATGATTATTGGTGCTGATTATTTGCTTGTTTATGCTCATAAGTAAAGCTTGACATGTTCTACAAATGGGCCATTAATGTAGCAGTCAGGACTAAACAGTATCTATTGTGATGGGAGTGGCATTTGGTCGAAATTTGTGGTAATGAGTATGGTTGCAAAATGTTGTAAGAGTTATGGTTGGCACGATGGAATTTTCTAATAGTCACACTGTTTAAATGTAACTTGAGTAATGTAATATTCATCAACATACTGTTATGCTTCAAATGCTTGACCCTGTGATTAGATATACAGAAAGTTTTCCGCTCTGGATCTCTCCATCCCCAACCACGAGTAAGCATTTGTTTCTGTTCTGGATAATTTATTCCCAATTTGCATATCCTGATTTTTCTTGTTGCTTACATATACTATTTGTTTTTGTCCTTTTTTGAAAATGTGACTAATCTATGTGAATATATTTTACTTTGAGTGTAGATCCTTTGCTTGCAGGGATCCCCAGATGGTCCTGAACAGTAAGAATATTTTCTTTATTCTTTAAAAATATGTATATATTTCTAATGAAGTTATTTTATTTGTGCAATTTTCTTTAATAATGGGAATCAAACTTTAAAATCTTCCGTCTAGTGACTGTTTTTCTCTTCCAGATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAGCGTTCAATGGTTTGTATTATTTTGTTCACTCTTCTGTGTGTTCTTATATGACTTTACTAACTTCTGTCAATCACCAACTCTCATTATTTGAACTGGGTGATATCAGTAAGTAATGAAAATGTGACCACAAGTATTTCATGGAAATGCTCGAGACAAGTTTCCTCTCTATTTAACTTGTTCTTTGTTTGGTCTTGATGGCAGAAAATGGTGCTGGATTAAACTTTTTTGTTCGTTTCTTTTCCTATTTGAATTTGAAGATATCAATTTTTTCTCCCCCTATTTCGAGATATCCCACTTGTCCCATAGGCGAATTTGAATTTGAATGCATTAACAAGACTAAGTATTTTATATTGAACTACTTTCTTGGAGTTTACAACTGAATATCTAGTCTCTACCGTTAGAGTTGAACTCCAATATTTGGTATAGATTTTATTATTTAATTTGCTTGCCCTGTGGATGGAAAGCTGATGGATCTCTGGCATCTTTTCTACTATTAGTCTAGTCAGATTCAGTTGTGAAAGTTTTCATGTTTATATGTATGCATGTAAGTGTATGTATAAAGAATAAGAAGAAGAACAAATCTAGAGAGCAAAGATTCTTCGAAAAGGACAAGGGGAGAATTGGGAGTTTCCCTGAAGGAAGATTCTGGGATAGAAGTTTATAAGAAAAACTTCAGTCCAAGTTATCGATAGAGTAGAGAAGTAGCAAAACCCTTATGTAAGGTACTCCAAGTAAAGGCTGTAACTGTACAAGCTCCAAAATTTAGGAGAACAGTCCTGAAAAAACCAATAAAGAGTTGTATTTTCAAATTGGAAAAATTATAAATAGAGATGAACTTTTAATTTACTCTCTCCAACAACACATCAAATCCAAAGGTGAAAACTACTTAAGATTTTTGAATTGCTAGTTTTCATTTTGGTTATGACAGCTTAACGTAACAATATTGACCAAAGTATGATTAATTTCTTGATATCAAGTAATTGCATCTGCAATGTTCATGATAATAGAAATCATTTGGTCACAAGCAGAAAGTGGTAGTCAATGAGATCGTAAAAATGTGAATCTAATCTTCATTCACATTTGCATTTATGGGTTATGTTTAAACTTTCATGTGTGCTAGTCACTCATTTGAAGTTCACAGCTGTCTCCGTTTTCCTCTCCATGTTGCTTTTAACTATAAACTACATTCAACATTGAACAATGTTTTCATTTGTATAAGTATCCTATGATGTACAATTTTTCCTATGATGTACAATTTTATCATTCTTGCTTCAGGTTCCTATAGATTCATGTTACATTGGTTCCCACAATTCTGCATTTCTTCAGCAGGTAAGCTAACTGCTCATTGTTCCTTAATGGGTTTTTtACTTTtCTTGGAATCTTACAGTTACCATCTCCGGATGTATCATCTATTCATTGCTGGTGATGATTTGATTTCTGATGCTGTATAGGCTTCTTACATAACGGGTGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGCTGTTTCAGTATCTCTCTGTAAGTTTTACTTTCCTATGGGTTCCCcTGTTTTTtGTAATCTCTTGCTTAGGCTGTTGTGATATTCTATTGTTCTTTCTATGCAGACTGTTTTTGGCACCGATTTGCATTCCCGGACCTTTTTACAGCTTCCAAAATCTGTTGGTGTGGATTTTCGTGCATCGTAAGTCTGCAGTCTTGTGAATACAAAATTCTGTTGTTTTGTGCTTATTATTTTGTGTCACTTACTACGGCCTTCTACAGATTTACACCTCTCATCATCATTTTGGGAATTTGCAGGTGTTTTTGCCACAAGAAAACGATCGATATGGGCTATGTCTGTTCTGTTTGTTTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGTAAGCGAAAGGTCAAGCCATAATTATTATGTTTTTCCCTTTTACTTGTGGTTTCCTAAAATTTATTGAAGGTAGTTTGACATTGACTTTCGAGAATGCTGTTGTCTGTTTGGCTTTATAAGTATGAAAaGGAAGATGAAGAGGAACCTAATTTTTGAGAACTCATTATGCTAGGGCTTTTTCCTCGGCAGTTTATATAATATTTCGGTGAGACATGATGTCAACGCGAGGGGGAGCTTTGTACCTTAGTATTGCCCCTAGATAATGGTTGCCTAAATAAGATGCTAAAAAATTCTGCCACGGCTTAAGTTTCTTAGGGGTGTTTGGAAAACTGAAATGTAATTAGAGTCACTTTGAATCAGAGTGGTGTTAAAATGGGTGTTGAATTGAGGGCAAAACAAAAATGGGGTCGTAAAGCGCCAAGACCCTTCTGAAATGCTAAAAAAACTCAACAATGTTGTTTGCCTACTATTACTTCTGTCTACTTCAGAACAAGATTGAATGTATTAATATTAATGAGTTTCAACTTCATTCAGGTCAGTTTTTGGTGAGACACCAGTAGAACTCGATTCAGTGTCTAAACTGAAGAGAAAAACTCCAGAATGATTGCGCTCTTCTGTAAGTTGTGATGGATCATTTCATGAAACTCAGTGTTATTTTATGATTTTGAACCATTTGTTTTCACTTCCATGGCTATAGAACTGCTTCATTTTTCTTCCCTTTCTTGAAGCTGTTTGGAACTGGAATTCATTTGGTTCACATGGCATGAACAGAGATGACTCAAAGGAAACAGTTGCTGAAAGAGAGTCAATCTCAACATTGTACAATTCAGATCAATAGTTGTCGAATTCGGATGGGATAACATGGAACGATGGCTAGCAAGGTCATGCATCTGTATTTCGTCTATTCCAGTCTGATACAAATCGGGTACAAGGTTTATATGGAATTCGAGACTTTAACTAGAAAAGTTAGTCTAATGTAATTGTACCGAAAGCTTGAGTGGTTTATAAGTACATGTAGATTTATATTTCTCTCACGCTTGAAAGTACTCCAAAGCTTACCTTTGTAAAGGTAGACAGAAGGATAGGGATATTCACATTGTTGATTTCAAGACCTCATACTTGGAAATTTTACGAGTTTGAAATGTGCCAAGTGAATCATATAATACTACAATTTGAGCATA

mRNA sequence

GCCCATTCTGAAGCAGCCATGGCTTCAGCTCCTTCGAAGCTTTACGCAGATGATGTTAGCCTTTTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTGCTCTTCCGTTCTCCAAGTTTCTGTCTCATGTAATTGATAAATTATCTCCTTTCCTGTGAACCATTCTACCCAGTAGGTTTTTCTGATAGAACTGTAATGAACATTAGCATTTCCTTTTTCTTTCTGTTTTGGGTGTATAGGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAACCAACTTAATGAGGTTGTGGTTATTGGTACTGGATATGCTTCATGCAAGTATTTATACAACTCGTCTTCTTACTCAAATCATGGCCTTGAAGATGGTAGAATGCCTGCACTTTGTACTCGTTTATTGAAGAATTTGGAGGAGTTCGTGATTGGGGATGAGCAGTCCATCAAGGAAGATCCCAAAGGAGGGACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCCTTGTGTTATATACAGAAAGTTTTCCGCTCTGGATCTCTCCATCCCCAACCACGAATCCTTTGCTTGCAGGGATCCCCAGATGGTCCTGAACAATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAGCGTTCAATGGTTCCTATAGATTCATGTTACATTGGTTCCCACAATTCTGCATTTCTTCAGCAGGCTTCTTACATAACGGGTGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGCTGTTTCAGTATCTCTCTACTGTTTTTGGCACCGATTTGCATTCCCGGACCTTTTTACAGCTTCCAAAATCTGTTGGTGTGGATTTTCGTGCATCGTGTTTTTGCCACAAGAAAACGATCGATATGGGCTATGTCTGTTCTGTTTGTTTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGTCAGTTTTTGGTGAGACACCAGTAGAACTCGATTCAGTGTCTAAACTGAAGAGAAAAACTCCAGAATGATTGCGCTCTTCTCTGTTTGGAACTGGAATTCATTTGGTTCACATGGCATGAACAGAGATGACTCAAAGGAAACAGTTGCTGAAAGAGAGTCAATCTCAACATTGTACAATTCAGATCAATAGTTGTCGAATTCGGATGGGATAACATGGAACGATGGCTAGCAAGGTCATGCATCTGTATTTCGTCTATTCCAGTCTGATACAAATCGGGTACAAGGTTTATATGGAATTCGAGACTTTAACTAGAAAAGTTAGTCTAATGTAATTGTACCGAAAGCTTGAGTGGTTTATAAGTACATGTAGATTTATATTTCTCTCACGCTTGAAAGTACTCCAAAGCTTACCTTTGTAAAGGTAGACAGAAGGATAGGGATATTCACATTGTTGATTTCAAGACCTCATACTTGGAAATTTTACGAGTTTGAAATGTGCCAAGTGAATCATATAATACTACAATTTGAGCATA

Coding sequence (CDS)

ATGCCTGCACTTTGTACTCGTTTATTGAAGAATTTGGAGGAGTTCGTGATTGGGGATGAGCAGTCCATCAAGGAAGATCCCAAAGGAGGGACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCCTTGTGTTATATACAGAAAGTTTTCCGCTCTGGATCTCTCCATCCCCAACCACGAATCCTTTGCTTGCAGGGATCCCCAGATGGTCCTGAACAATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAGCGTTCAATGGTTCCTATAGATTCATGTTACATTGGTTCCCACAATTCTGCATTTCTTCAGCAGGCTTCTTACATAACGGGTGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGCTGTTTCAGTATCTCTCTACTGTTTTTGGCACCGATTTGCATTCCCGGACCTTTTTACAGCTTCCAAAATCTGTTGGTGTGGATTTTCGTGCATCGTGTTTTTGCCACAAGAAAACGATCGATATGGGCTATGTCTGTTCTGTTTGTTTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGTCAGTTTTTGGTGAGACACCAGTAGAACTCGATTCAGTGTCTAAACTGAAGAGAAAAACTCCAGAATGA

Protein sequence

MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSVSKLKRKTPE*

Homology

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BLAST of Cucsa.178810.5 vs. Swiss-Prot
Match: TFB4_ARATH (RNA polymerase II transcription factor B subunit 4 OS=Arabidopsis thaliana GN=TFB4 PE=2 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 7.4e-88
Identity = 159/211 (75.36%), Postives = 179/211 (84.83%), Query Frame = 1


Query: 1   MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSS-LLSGSLSMALCYIQKVFRSGSLHPQ 60
           MPA+   LLK LEEFV  DE+  KE+     + S LLSGSLSMALCYIQ+VFRSG LHPQ
Sbjct: 89  MPAIFGSLLKKLEEFVTKDEELSKEEVSEDRIPSCLLSGSLSMALCYIQRVFRSGHLHPQ 148

Query: 61  PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKP 120
           PRILCLQGSPDGPEQYVA+MN+IFSAQR MVPIDSCYIG  NSAFLQQASYITGGV+  P
Sbjct: 149 PRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQASYITGGVHHTP 208

Query: 121 QQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCK 180
           +Q+DGLFQYL+T+F TDLHSR F+QLPK +GVDFRASCFCHKKTIDMGY+CSVCLSIFC+
Sbjct: 209 KQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRASCFCHKKTIDMGYICSVCLSIFCE 268

Query: 181 HHKKCSTCGSVFGETPV-ELDSVSKLKRKTP 210
           HHKKCSTCGSVFG++ + +  S S  KRK P
Sbjct: 269 HHKKCSTCGSVFGQSKLDDASSASDKKRKAP 299

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BLAST of Cucsa.178810.5 vs. Swiss-Prot
Match: TF2H3_DICDI (General transcription factor IIH subunit 3 OS=Dictyostelium discoideum GN=gtf2h3 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-43
Identity = 85/160 (53.12%), Postives = 110/160 (68.75%), Query Frame = 1


Query: 32  MSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVP 91
           +SS  S S+S+ALCYI ++ R      +PRIL    SPD   QY+++MN IFS+Q+  +P
Sbjct: 186 LSSSFSASMSIALCYINRIKRETPTI-KPRILVFNISPDVSSQYISVMNCIFSSQKQSIP 245

Query: 92  IDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGV 151
           +DSC +   +S FLQQAS++T G+YLKPQ+ + L QYL T F  D  SR  L  P    V
Sbjct: 246 VDSCILSQSDSTFLQQASHLTSGIYLKPQKQELLSQYLLTTFLLDTLSRKSLAYPTLKSV 305

Query: 152 DFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVF 192
           D+RASCFCHK+ +D+GYVCSVCLSIFC H   CSTCG+ F
Sbjct: 306 DYRASCFCHKRIVDIGYVCSVCLSIFCGHSSSCSTCGTKF 344

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BLAST of Cucsa.178810.5 vs. Swiss-Prot
Match: TF2H3_HUMAN (General transcription factor IIH subunit 3 OS=Homo sapiens GN=GTF2H3 PE=1 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 6.0e-37
Identity = 89/204 (43.63%), Postives = 124/204 (60.78%), Query Frame = 1


Query: 8   LLKNLEEFVIGDEQSI--KEDPKGGTMSSLLSGSLSMALCYIQKVFRS--GSLHPQPRIL 67
           LL +  E ++ + + +  K D KG    +LL+GSL+ ALCYI ++ +    +   + RIL
Sbjct: 103 LLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL 162

Query: 68  CLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMD 127
            ++ + D   QY+  MN IF+AQ+  + ID+C + S +S  LQQA  ITGG+YLK  QM 
Sbjct: 163 VIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMP 222

Query: 128 GLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKK 187
            L QYL  VF  D   R+ L LP  V VD+RA+CFCH+  I++GYVCSVCLSIFC     
Sbjct: 223 SLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPI 282

Query: 188 CSTCGSVFGETPVELDSVSKLKRK 208
           C+TC + F    + L  V K K+K
Sbjct: 283 CTTCETAF---KISLPPVLKAKKK 302

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BLAST of Cucsa.178810.5 vs. Swiss-Prot
Match: TF2H3_MOUSE (General transcription factor IIH subunit 3 OS=Mus musculus GN=Gtf2h3 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.8e-37
Identity = 86/186 (46.24%), Postives = 116/186 (62.37%), Query Frame = 1


Query: 24  KEDPKGGTMSSLLSGSLSMALCYIQKVFRS--GSLHPQPRILCLQGSPDGPEQYVAIMNA 83
           K D KG    +LL+GSL+ ALCYI +V ++   +   + RIL ++ + D   QY+  MN 
Sbjct: 122 KSDIKGQHTETLLAGSLAKALCYIHRVNKAVKDNQEMKSRILVIKAAEDSALQYMNFMNV 181

Query: 84  IFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRT 143
           IF+AQ+  + ID+C + S +S  LQQA  ITGG+YLK  QM  L QYL  VF  D   R+
Sbjct: 182 IFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRS 241

Query: 144 FLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSV 203
            L LP  + VD+RA+CFCH+  I++GYVCSVCLSIFC     C+TC + F    + L  V
Sbjct: 242 QLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF---KISLPPV 301

Query: 204 SKLKRK 208
            K K+K
Sbjct: 302 LKAKKK 303

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BLAST of Cucsa.178810.5 vs. Swiss-Prot
Match: TF2H3_RAT (General transcription factor IIH subunit 3 OS=Rattus norvegicus GN=Gtf2h3 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.7e-36
Identity = 85/186 (45.70%), Postives = 115/186 (61.83%), Query Frame = 1


Query: 24  KEDPKGGTMSSLLSGSLSMALCYIQKVFRS--GSLHPQPRILCLQGSPDGPEQYVAIMNA 83
           K D KG    +LL+GSL+ ALCYI +  ++   +   + RIL ++ + D   QY+  MN 
Sbjct: 122 KSDIKGQHTETLLAGSLAKALCYIHRASKAVKDNQEMKSRILVIKAAEDSALQYMNFMNV 181

Query: 84  IFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRT 143
           IF+AQ+  + ID+C + S +S  LQQA  ITGG+YLK  QM  L QYL  VF  D   R+
Sbjct: 182 IFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRS 241

Query: 144 FLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSV 203
            L LP  + VD+RA+CFCH+  I++GYVCSVCLSIFC     C+TC + F    + L  V
Sbjct: 242 QLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF---KISLPPV 301

Query: 204 SKLKRK 208
            K K+K
Sbjct: 302 LKAKKK 303

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BLAST of Cucsa.178810.5 vs. TrEMBL
Match: A0A0A0LMM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072450 PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 4.8e-118
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 1


Query: 1   MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP 60
           MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP
Sbjct: 86  MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP 145

Query: 61  RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQ 120
           RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQ
Sbjct: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQ 205

Query: 121 QMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKH 180
           QMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKH
Sbjct: 206 QMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKH 265

Query: 181 HKKCSTCGSVFGETPVELDSVSKLKRKTPE 211
           HKKCSTCGSVFGETPVELDSVSKLKRKTPE
Sbjct: 266 HKKCSTCGSVFGETPVELDSVSKLKRKTPE 295

[Close]

BLAST of Cucsa.178810.5 vs. TrEMBL
Match: M5XYU6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009386mg PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 7.5e-95
Identity = 175/210 (83.33%), Postives = 186/210 (88.57%), Query Frame = 1


Query: 1   MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP 60
           MPA C  LL+ LEEFVI DEQ IKE  + G  SSLLSGSLSMALCYIQ+VFRSG LHPQP
Sbjct: 86  MPARCVNLLQKLEEFVIEDEQLIKEGLREGIASSLLSGSLSMALCYIQRVFRSGPLHPQP 145

Query: 61  RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQ 120
           RILCLQGS DGPEQYVAIMNAIFSAQRS VPIDSCY+GS NSAFLQQASYITGGVYLKPQ
Sbjct: 146 RILCLQGSSDGPEQYVAIMNAIFSAQRS-VPIDSCYMGSSNSAFLQQASYITGGVYLKPQ 205

Query: 121 QMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKH 180
           Q +GLFQYLSTVF TDLHSR FLQLPKS+GVDFRASCFCHKKTIDMGY+CSVCLSIFCKH
Sbjct: 206 QPNGLFQYLSTVFATDLHSRAFLQLPKSLGVDFRASCFCHKKTIDMGYICSVCLSIFCKH 265

Query: 181 HKKCSTCGSVFGETPVELDSVSKLKRKTPE 211
           HKKCSTCGSVFG+   +++S S  KRKTPE
Sbjct: 266 HKKCSTCGSVFGQAQSDVNSTSNKKRKTPE 294

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BLAST of Cucsa.178810.5 vs. TrEMBL
Match: E0CR79_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03100 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 6.3e-94
Identity = 170/210 (80.95%), Postives = 184/210 (87.62%), Query Frame = 1


Query: 1   MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP 60
           MPALC+ LL+ LEEFV GDE+  KE    G  SSLLSGSLSMALCYIQ+VFR+G LHPQP
Sbjct: 87  MPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSSLLSGSLSMALCYIQRVFRTGPLHPQP 146

Query: 61  RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQ 120
           RILCLQGSPDGPEQYVA+MNAIFSAQRSMVPIDSC IG+ +SAFLQQASYITGGVYLKPQ
Sbjct: 147 RILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYITGGVYLKPQ 206

Query: 121 QMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKH 180
           Q+DGLFQYLSTVF TDLHSR FLQLPK  GVDFRASCFCHK TIDMGY+CSVCLSIFCKH
Sbjct: 207 QLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDFRASCFCHKNTIDMGYICSVCLSIFCKH 266

Query: 181 HKKCSTCGSVFGETPVELDSVSKLKRKTPE 211
           HKKCSTCGSVFG+   + +S +  KRKTPE
Sbjct: 267 HKKCSTCGSVFGQAQSDGNSATDRKRKTPE 296

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BLAST of Cucsa.178810.5 vs. TrEMBL
Match: A0A061FGT5_THECC (Basal transcription factor complex subunit-related isoform 1 OS=Theobroma cacao GN=TCM_035096 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 1.1e-93
Identity = 168/210 (80.00%), Postives = 183/210 (87.14%), Query Frame = 1


Query: 1   MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP 60
           MP +C+ LL+ LEEF+I DEQ  KE P+G   SSLLSGSLSMALCYIQ+VFRSG+LHP P
Sbjct: 86  MPVMCSSLLQKLEEFLIKDEQLSKEVPEGRIKSSLLSGSLSMALCYIQRVFRSGALHPHP 145

Query: 61  RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQ 120
           RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY+G+ NSAFLQQASYITGGV+ KPQ
Sbjct: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYMGAQNSAFLQQASYITGGVHHKPQ 205

Query: 121 QMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKH 180
            +DGLFQYL T+F TDLHSR+FL LPK VGVDFRASCFCHK TIDMGY+CSVCLSIFCKH
Sbjct: 206 HLDGLFQYLMTIFATDLHSRSFLHLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIFCKH 265

Query: 181 HKKCSTCGSVFGETPVELDSVSKLKRKTPE 211
           HKKCSTCGSVFG+   E  S S  KRKTPE
Sbjct: 266 HKKCSTCGSVFGQAQSEAASTSDKKRKTPE 295

[Close]

BLAST of Cucsa.178810.5 vs. TrEMBL
Match: B9H7D6_POPTR (Basal transcription factor complex subunit-related family protein OS=Populus trichocarpa GN=POPTR_0005s15770g PE=4 SV=2)

HSP 1 Score: 347.1 bits (889), Expect = 1.6e-92
Identity = 164/210 (78.10%), Postives = 183/210 (87.14%), Query Frame = 1


Query: 1   MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP 60
           MP+L + LL+ LEEF+I DE+  KE  +    SSLLSGSLSMALCYIQ+VFRSG LHPQP
Sbjct: 88  MPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSGSLSMALCYIQRVFRSGPLHPQP 147

Query: 61  RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQ 120
           RILCLQGSPDGPEQYVA+MNAIFSAQRSMVPIDSCY+G+HNSAFLQQASYITGGVY+KPQ
Sbjct: 148 RILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGAHNSAFLQQASYITGGVYVKPQ 207

Query: 121 QMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKH 180
            +DGLFQYL+TVF TDLHSR+F+QLP+  GVDFRASCFCHK TIDMGY+CSVCLSIFC H
Sbjct: 208 HLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFRASCFCHKTTIDMGYICSVCLSIFCNH 267

Query: 181 HKKCSTCGSVFGETPVELDSVSKLKRKTPE 211
           HKKCSTCGSVFG+   +  S S LKRK PE
Sbjct: 268 HKKCSTCGSVFGQAQSDTSSTSDLKRKAPE 297

[Close]

BLAST of Cucsa.178810.5 vs. TAIR10
Match: AT1G18340.1 (AT1G18340.1 basal transcription factor complex subunit-related)

HSP 1 Score: 324.7 bits (831), Expect = 4.2e-89
Identity = 159/211 (75.36%), Postives = 179/211 (84.83%), Query Frame = 1


Query: 1   MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSS-LLSGSLSMALCYIQKVFRSGSLHPQ 60
           MPA+   LLK LEEFV  DE+  KE+     + S LLSGSLSMALCYIQ+VFRSG LHPQ
Sbjct: 89  MPAIFGSLLKKLEEFVTKDEELSKEEVSEDRIPSCLLSGSLSMALCYIQRVFRSGHLHPQ 148

Query: 61  PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKP 120
           PRILCLQGSPDGPEQYVA+MN+IFSAQR MVPIDSCYIG  NSAFLQQASYITGGV+  P
Sbjct: 149 PRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQASYITGGVHHTP 208

Query: 121 QQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCK 180
           +Q+DGLFQYL+T+F TDLHSR F+QLPK +GVDFRASCFCHKKTIDMGY+CSVCLSIFC+
Sbjct: 209 KQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRASCFCHKKTIDMGYICSVCLSIFCE 268

Query: 181 HHKKCSTCGSVFGETPV-ELDSVSKLKRKTP 210
           HHKKCSTCGSVFG++ + +  S S  KRK P
Sbjct: 269 HHKKCSTCGSVFGQSKLDDASSASDKKRKAP 299

[Close]

BLAST of Cucsa.178810.5 vs. NCBI nr
Match: gi|449470273|ref|XP_004152842.1| (PREDICTED: general transcription factor IIH subunit 3 [Cucumis sativus])

HSP 1 Score: 431.8 bits (1109), Expect = 6.9e-118
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 1


Query: 1   MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP 60
           MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP
Sbjct: 86  MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP 145

Query: 61  RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQ 120
           RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQ
Sbjct: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQ 205

Query: 121 QMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKH 180
           QMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKH
Sbjct: 206 QMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKH 265

Query: 181 HKKCSTCGSVFGETPVELDSVSKLKRKTPE 211
           HKKCSTCGSVFGETPVELDSVSKLKRKTPE
Sbjct: 266 HKKCSTCGSVFGETPVELDSVSKLKRKTPE 295

[Close]

BLAST of Cucsa.178810.5 vs. NCBI nr
Match: gi|659082582|ref|XP_008441918.1| (PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH subunit 3 [Cucumis melo])

HSP 1 Score: 424.1 bits (1089), Expect = 1.4e-115
Identity = 206/210 (98.10%), Postives = 208/210 (99.05%), Query Frame = 1


Query: 1   MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP 60
           MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP
Sbjct: 86  MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP 145

Query: 61  RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQ 120
           RILCLQGSPDGPEQYVAIMNAIFSAQRSMV IDSCYIGSHNSAFLQQASYITGGVYLKPQ
Sbjct: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSCYIGSHNSAFLQQASYITGGVYLKPQ 205

Query: 121 QMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKH 180
           QMDGLFQYL+TVFGTDLHSRTFLQLPKSVGVDFRASCFCHK TIDMGYVCSVCLSIFCKH
Sbjct: 206 QMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRASCFCHKXTIDMGYVCSVCLSIFCKH 265

Query: 181 HKKCSTCGSVFGETPVELDSVSKLKRKTPE 211
           HKKCSTCGSVFGETPVELDS+SKLKRKTPE
Sbjct: 266 HKKCSTCGSVFGETPVELDSLSKLKRKTPE 295

[Close]

BLAST of Cucsa.178810.5 vs. NCBI nr
Match: gi|645225617|ref|XP_008219657.1| (PREDICTED: general transcription factor IIH subunit 3 [Prunus mume])

HSP 1 Score: 361.3 bits (926), Expect = 1.1e-96
Identity = 176/210 (83.81%), Postives = 187/210 (89.05%), Query Frame = 1


Query: 1   MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP 60
           MPA C  LL+ LEEFVI DEQ IKE  + G  SSLLSGSLSMALCYIQ+VFRSG LHPQP
Sbjct: 86  MPARCVNLLQKLEEFVIKDEQLIKEGLREGIASSLLSGSLSMALCYIQRVFRSGPLHPQP 145

Query: 61  RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQ 120
           RILCLQGS DGPEQYVAIMNAIFSAQRSMVPIDSCY+GS NSAFLQQASYITGGVYLKPQ
Sbjct: 146 RILCLQGSSDGPEQYVAIMNAIFSAQRSMVPIDSCYMGSSNSAFLQQASYITGGVYLKPQ 205

Query: 121 QMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKH 180
           Q +GLFQYLSTVF TDLHSR FLQLPKS+GVDFRASCFCHKKTIDMGY+CSVCLSIFCKH
Sbjct: 206 QPNGLFQYLSTVFATDLHSRAFLQLPKSLGVDFRASCFCHKKTIDMGYICSVCLSIFCKH 265

Query: 181 HKKCSTCGSVFGETPVELDSVSKLKRKTPE 211
           HKKCSTCGSVFG+   +++S S  KRKTPE
Sbjct: 266 HKKCSTCGSVFGQAQSDVNSTSNKKRKTPE 295

[Close]

BLAST of Cucsa.178810.5 vs. NCBI nr
Match: gi|694371044|ref|XP_009363173.1| (PREDICTED: general transcription factor IIH subunit 3 [Pyrus x bretschneideri])

HSP 1 Score: 359.8 bits (922), Expect = 3.3e-96
Identity = 174/210 (82.86%), Postives = 186/210 (88.57%), Query Frame = 1


Query: 1   MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP 60
           MPA C+ LL+ LEEFVI DEQ  KE  + G  SSLLSGSLSMALCYIQ+VFRSG LHPQP
Sbjct: 87  MPARCSNLLQKLEEFVIKDEQLFKEGSREGISSSLLSGSLSMALCYIQRVFRSGPLHPQP 146

Query: 61  RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQ 120
           RILCLQGS DGPEQYVAIMN+IFSAQRSMVPIDSCY+GS NSAFLQQASYITGGVYLKPQ
Sbjct: 147 RILCLQGSSDGPEQYVAIMNSIFSAQRSMVPIDSCYMGSSNSAFLQQASYITGGVYLKPQ 206

Query: 121 QMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKH 180
           Q +GLFQYLSTVF TDLHSR FLQLPKS+GVDFRASCFCHKKTIDMGY+CSVCLSIFCKH
Sbjct: 207 QPNGLFQYLSTVFATDLHSRAFLQLPKSLGVDFRASCFCHKKTIDMGYICSVCLSIFCKH 266

Query: 181 HKKCSTCGSVFGETPVELDSVSKLKRKTPE 211
           HKKCSTCGSVFG+  ++  S S  KRKTPE
Sbjct: 267 HKKCSTCGSVFGQAQLDASSTSNRKRKTPE 296

[Close]

BLAST of Cucsa.178810.5 vs. NCBI nr
Match: gi|657998958|ref|XP_008391898.1| (PREDICTED: general transcription factor IIH subunit 3 [Malus domestica])

HSP 1 Score: 359.4 bits (921), Expect = 4.4e-96
Identity = 174/210 (82.86%), Postives = 186/210 (88.57%), Query Frame = 1


Query: 1   MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP 60
           MPA C+ LL+ LEEFVI DEQ  KE  + G  SSLLSGSLSMALCYIQ+VFRSG LHPQP
Sbjct: 87  MPARCSXLLQKLEEFVIKDEQLFKEGSREGISSSLLSGSLSMALCYIQRVFRSGPLHPQP 146

Query: 61  RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQ 120
           RILCLQGS DGPEQYVAIMN+IFSAQRSMVPIDSCY+GS NSAFLQQASYITGGVYLKPQ
Sbjct: 147 RILCLQGSSDGPEQYVAIMNSIFSAQRSMVPIDSCYMGSSNSAFLQQASYITGGVYLKPQ 206

Query: 121 QMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKH 180
           Q +GLFQYLSTVF TDLHSR FLQLPKS+GVDFRASCFCHKKTIDMGY+CSVCLSIFCKH
Sbjct: 207 QPNGLFQYLSTVFATDLHSRAFLQLPKSLGVDFRASCFCHKKTIDMGYICSVCLSIFCKH 266

Query: 181 HKKCSTCGSVFGETPVELDSVSKLKRKTPE 211
           HKKCSTCGSVFG+  ++  S S  KRKTPE
Sbjct: 267 HKKCSTCGSVFGQAQLDASSTSNRKRKTPE 296

The following BLAST results are available for this feature:

BLAST of Cucsa.178810.5 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TFB4_ARATH	7.4e-88	75.36	RNA polymerase II transcription factor B subunit 4 OS=Arabidopsis thaliana GN=TF...	[more]
TF2H3_DICDI	1.1e-43	53.13	General transcription factor IIH subunit 3 OS=Dictyostelium discoideum GN=gtf2h3...	[more]
TF2H3_HUMAN	6.0e-37	43.63	General transcription factor IIH subunit 3 OS=Homo sapiens GN=GTF2H3 PE=1 SV=2	[more]
TF2H3_MOUSE	7.8e-37	46.24	General transcription factor IIH subunit 3 OS=Mus musculus GN=Gtf2h3 PE=1 SV=1	[more]
TF2H3_RAT	1.7e-36	45.70	General transcription factor IIH subunit 3 OS=Rattus norvegicus GN=Gtf2h3 PE=2 S...	[more]

BLAST of Cucsa.178810.5 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMM2_CUCSA	4.8e-118	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072450 PE=4 SV=1	[more]
M5XYU6_PRUPE	7.5e-95	83.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009386mg PE=4 SV=1	[more]
E0CR79_VITVI	6.3e-94	80.95	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03100 PE=4 SV=...	[more]
A0A061FGT5_THECC	1.1e-93	80.00	Basal transcription factor complex subunit-related isoform 1 OS=Theobroma cacao ...	[more]
B9H7D6_POPTR	1.6e-92	78.10	Basal transcription factor complex subunit-related family protein OS=Populus tri...	[more]

BLAST of Cucsa.178810.5 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G18340.1	4.2e-89	75.36	basal transcription factor complex subunit-related	[more]

BLAST of Cucsa.178810.5 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470273\|ref\|XP_004152842.1\|	6.9e-118	100.00	PREDICTED: general transcription factor IIH subunit 3 [Cucumis sativus]	[more]
gi\|659082582\|ref\|XP_008441918.1\|	1.4e-115	98.10	PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH subunit 3 [Cucu...	[more]
gi\|645225617\|ref\|XP_008219657.1\|	1.1e-96	83.81	PREDICTED: general transcription factor IIH subunit 3 [Prunus mume]	[more]
gi\|694371044\|ref\|XP_009363173.1\|	3.3e-96	82.86	PREDICTED: general transcription factor IIH subunit 3 [Pyrus x bretschneideri]	[more]
gi\|657998958\|ref\|XP_008391898.1\|	4.4e-96	82.86	PREDICTED: general transcription factor IIH subunit 3 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004600	TFIIH_Tfb4/GTF2H3

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0006289	nucleotide-excision repair

Vocabulary: **Cellular Component**
Term	Definition
GO:0000439	core TFIIH complex

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006366	transcription from RNA polymerase II promoter
cellular_component	GO:0000439	core TFIIH complex
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.178810	Cucsa.178810	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.178810.5	Cucsa.178810.5-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.178810.5.five_prime_UTR.1	Cucsa.178810.5.five_prime_UTR.1	five_prime_UTR
Cucsa.178810.5.five_prime_UTR.2	Cucsa.178810.5.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.178810.5.CDS.1	Cucsa.178810.5.CDS.1	CDS
Cucsa.178810.5.CDS.2	Cucsa.178810.5.CDS.2	CDS
Cucsa.178810.5.CDS.3	Cucsa.178810.5.CDS.3	CDS
Cucsa.178810.5.CDS.4	Cucsa.178810.5.CDS.4	CDS
Cucsa.178810.5.CDS.5	Cucsa.178810.5.CDS.5	CDS
Cucsa.178810.5.CDS.6	Cucsa.178810.5.CDS.6	CDS
Cucsa.178810.5.CDS.7	Cucsa.178810.5.CDS.7	CDS
Cucsa.178810.5.CDS.8	Cucsa.178810.5.CDS.8	CDS
Cucsa.178810.5.CDS.9	Cucsa.178810.5.CDS.9	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.178810.5.three_prime_UTR.1	Cucsa.178810.5.three_prime_UTR.1	three_prime_UTR
Cucsa.178810.5.three_prime_UTR.2	Cucsa.178810.5.three_prime_UTR.2	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004600	TFIIH subunit Tfb4/p34	PANTHER	PTHR12831	TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED	coord: 1..210 score: 5.2E
IPR004600	TFIIH subunit Tfb4/p34	PFAM	PF03850	Tfb4	coord: 21..188 score: 2.5