Cucsa.178810.4 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.178810.4
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	General transcription factor IIH subunit 3
Location	scaffold01227 : 1164629 .. 1169022 (+)
Sequence length	1382

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCCATTCTGAAGCAGCCATGGCTTCAGCTCCTTCGAAGCTTTACGCAGGTTCTCCTCCAATCCCTTTCTCCTTCCTTATGGGCACTCGGGTACAACTATCGAAATTGCAGTGGCTTATTCGTTTTTTtGATCTTTGATTGTGTTGTTGCAGATGATGTTAGCCTTTTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTGCTCTTCCGTTCTCCAAGTTTCTGTCTCATGTAATTGATAAATTATCTCCTTTCCTGTGAACCATTCTACCCAGTAGGTTTTTCTGATAGAACTGTAATGAACATTAGCATTTCCTTTTTCTTTCTGTTTTGGGTGTATAGGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAACCAACTTAATGAGGTTGTGGTTATTGGTACTGGATATGCTTCATGCAAGTATTTATACAACTCGTCTTCTTACTCAAATCATGGCCTTGAAGATGGTAGAATGCCTGCACTTTGTACTCGTTTATTGAAGAATTTGGAGGAGTTCGTGATTGGGGATGAGCAGTCCATCAAGGAAGATCCCAAAGGAGGGACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCCTTGTGTTGTATCCTTCCTTGTTGATGATTATTGGTGCTGATTATTTGCTTGTTTATGCTCATAAGTAAAGCTTGACATGTTCTACAAATGGGCCATTAATGTAGCAGTCAGGACTAAACAGTATCTATTGTGATGGGAGTGGCATTTGGTCGAAATTTGTGGTAATGAGTATGGTTGCAAAATGTTGTAAGAGTTATGGTTGGCACGATGGAATTTTCTAATAGTCACACTGTTTAAATGTAACTTGAGTAATGTAATATTCATCAACATACTGTTATGCTTCAAATGCTTGACCCTGTGATTAGATATACAGAAAGTTTTCCGCTCTGGATCTCTCCATCCCCAACCACGAGTAAGCATTTGTTTCTGTTCTGGATAATTTATTCCCAATTTGCATATCCTGATTTTTCTTGTTGCTTACATATACTATTTGTTTTTGTCCTTTTTTGAAAATGTGACTAATCTATGTGAATATATTTTACTTTGAGTGTAGATCCTTTGCTTGCAGGGATCCCCAGATGGTCCTGAACAGTAAGAATATTTTCTTTATTCTTTAAAAATATGTATATATTTCTAATGAAGTTATTTTATTTGTGCAATTTTCTTTAATAATGGGAATCAAACTTTAAAATCTTCCGTCTAGTGACTGTTTTTCTCTTCCAGATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAGCGTTCAATGGTTTGTATTATTTTGTTCACTCTTCTGTGTGTTCTTATATGACTTTACTAACTTCTGTCAATCACCAACTCTCATTATTTGAACTGGGTGATATCAGTAAGTAATGAAAATGTGACCACAAGTATTTCATGGAAATGCTCGAGACAAGTTTCCTCTCTATTTAACTTGTTCTTTGTTTGGTCTTGATGGCAGAAAATGGTGCTGGATTAAACTTTTTTGTTCGTTTCTTTTCCTATTTGAATTTGAAGATATCAATTTTTTCTCCCCCTATTTCGAGATATCCCACTTGTCCCATAGGCGAATTTGAATTTGAATGCATTAACAAGACTAAGTATTTTATATTGAACTACTTTCTTGGAGTTTACAACTGAATATCTAGTCTCTACCGTTAGAGTTGAACTCCAATATTTGGTATAGATTTTATTATTTAATTTGCTTGCCCTGTGGATGGAAAGCTGATGGATCTCTGGCATCTTTTCTACTATTAGTCTAGTCAGATTCAGTTGTGAAAGTTTTCATGTTTATATGTATGCATGTAAGTGTATGTATAAAGAATAAGAAGAAGAACAAATCTAGAGAGCAAAGATTCTTCGAAAAGGACAAGGGGAGAATTGGGAGTTTCCCTGAAGGAAGATTCTGGGATAGAAGTTTATAAGAAAAACTTCAGTCCAAGTTATCGATAGAGTAGAGAAGTAGCAAAACCCTTATGTAAGGTACTCCAAGTAAAGGCTGTAACTGTACAAGCTCCAAAATTTAGGAGAACAGTCCTGAAAAAACCAATAAAGAGTTGTATTTTCAAATTGGAAAAATTATAAATAGAGATGAACTTTTAATTTACTCTCTCCAACAACACATCAAATCCAAAGGTGAAAACTACTTAAGATTTTTGAATTGCTAGTTTTCATTTTGGTTATGACAGCTTAACGTAACAATATTGACCAAAGTATGATTAATTTCTTGATATCAAGTAATTGCATCTGCAATGTTCATGATAATAGAAATCATTTGGTCACAAGCAGAAAGTGGTAGTCAATGAGATCGTAAAAATGTGAATCTAATCTTCATTCACATTTGCATTTATGGGTTATGTTTAAACTTTCATGTGTGCTAGTCACTCATTTGAAGTTCACAGCTGTCTCCGTTTTCCTCTCCATGTTGCTTTTAACTATAAACTACATTCAACATTGAACAATGTTTTCATTTGTATAAGTATCCTATGATGTACAATTTTTCCTATGATGTACAATTTTATCATTCTTGCTTCAGGTTCCTATAGATTCATGTTACATTGGTTCCCACAATTCTGCATTTCTTCAGCAGGTAAGCTAACTGCTCATTGTTCCTTAATGGGTTTTTtACTTTtCTTGGAATCTTACAGTTACCATCTCCGGATGTATCATCTATTCATTGCTGGTGATGATTTGATTTCTGATGCTGTATAGGCTTCTTACATAACGGGTGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGCTGTTTCAGTATCTCTCTGTAAGTTTTACTTTCCTATGGGTTCCCcTGTTTTTtGTAATCTCTTGCTTAGGCTGTTGTGATATTCTATTGTTCTTTCTATGCAGACTGTTTTTGGCACCGATTTGCATTCCCGGACCTTTTTACAGCTTCCAAAATCTGTTGGTGTGGATTTTCGTGCATCGTAAGTCTGCAGTCTTGTGAATACAAAATTCTGTTGTTTTGTGCTTATTATTTTGTGTCACTTACTACGGCCTTCTACAGATTTACACCTCTCATCATCATTTTGGGAATTTGCAGGTGTTTTTGCCACAAGAAAACGATCGATATGGGCTATGTCTGTTCTGTTTGTTTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGTAAGCGAAAGGTCAAGCCATAATTATTATGTTTTTCCCTTTTACTTGTGGTTTCCTAAAATTTATTGAAGGTAGTTTGACATTGACTTTCGAGAATGCTGTTGTCTGTTTGGCTTTATAAGTATGAAAaGGAAGATGAAGAGGAACCTAATTTTTGAGAACTCATTATGCTAGGGCTTTTTCCTCGGCAGTTTATATAATATTTCGGTGAGACATGATGTCAACGCGAGGGGGAGCTTTGTACCTTAGTATTGCCCCTAGATAATGGTTGCCTAAATAAGATGCTAAAAAATTCTGCCACGGCTTAAGTTTCTTAGGGGTGTTTGGAAAACTGAAATGTAATTAGAGTCACTTTGAATCAGAGTGGTGTTAAAATGGGTGTTGAATTGAGGGCAAAACAAAAATGGGGTCGTAAAGCGCCAAGACCCTTCTGAAATGCTAAAAAAACTCAACAATGTTGTTTGCCTACTATTACTTCTGTCTACTTCAGAACAAGATTGAATGTATTAATATTAATGAGTTTCAACTTCATTCAGGTCAGTTTTTGGTGAGACACCAGTAGAACTCGATTCAGTGTCTAAACTGAAGAGAAAAACTCCAGAATGATTGCGCTCTTCTGTAAGTTGTGATGGATCATTTCATGAAACTCAGTGTTATTTTATGATTTTGAACCATTTGTTTTCACTTCCATGGCTATAGAACTGCTTCATTTTTCTTCCCTTTCTTGAAGCTGTTTGGAACTGGAATTCATTTGGTTCACATGGCATGAACAGAGATGACTCAAAGGAAACAGTTGCTGAAAGAGAGTCAATCTCAACATTGTACAATTCAGATCAATAGTTGTCGAATTCGGATGGGATAACATGGAACGATGGCTAGCAAGGTCATGCATCTGTATTTCGTCTATTCCAGTCTGATACAAATCGGGTACAAGGTTTATATGGAATTCGAGACTTTAACTAGAAAAGTTAGTCTAATGTAATTGTACCGAAAGCTTGAGTGGTTTATAAGTACATGTAGATTTATATTTCTCTCACGCTTGAAAGTACTCCAAAGCTTACCTTTGTAAAGGTAGACAGAAGGATAGGGATATTCACATTGTTGATTTCAAGACCTCATACTTGGAAATTTTACGAGTTTGAAATGTGCCAAGTGAATCATATAATACTACAATTTGAGCATA

mRNA sequence

GCCCATTCTGAAGCAGCCATGGCTTCAGCTCCTTCGAAGCTTTACGCAGATGATGTTAGCCTTTTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTGCTCTTCCGTTCTCCAAGTTTCTGTCTCATGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAACCAACTTAATGAGGTTGTGGTTATTGGTACTGGATATGCTTCATGCAAGTATTTATACAACTCGTCTTCTTACTCAAATCATGGCCTTGAAGATGGTAGAATGCCTGCACTTTGTACTCGTTTATTGAAGAATTTGGAGGAGTTCGTGATTGGGGATGAGCAGTCCATCAAGGAAGATCCCAAAGGAGGGACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCCTTGTGTTATATACAGAAAGTTTTCCGCTCTGGATCTCTCCATCCCCAACCACGAATCCTTTGCTTGCAGGGATCCCCAGATGGTCCTGAACAATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAGCGTTCAATGGTTCCTATAGATTCATGTTACATTGGTTCCCACAATTCTGCATTTCTTCAGCAGGCTTCTTACATAACGGGTGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGCTGTTTCAGTATCTCTCTACTGTTTTTGGCACCGATTTGCATTCCCGGACCTTTTTACAGCTTCCAAAATCTGTTGGTGTGGATTTTCGTGCATCGTGTTTTTGCCACAAGAAAACGATCGATATGGGCTATGTCTGTTCTGTTTGTTTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGTAAGCGAAAGGTCAGTTTTTGGTGAGACACCAGTAGAACTCGATTCAGTGTCTAAACTGAAGAGAAAAACTCCAGAATGATTGCGCTCTTCTCTGTTTGGAACTGGAATTCATTTGGTTCACATGGCATGAACAGAGATGACTCAAAGGAAACAGTTGCTGAAAGAGAGTCAATCTCAACATTGTACAATTCAGATCAATAGTTGTCGAATTCGGATGGGATAACATGGAACGATGGCTAGCAAGGTCATGCATCTGTATTTCGTCTATTCCAGTCTGATACAAATCGGGTACAAGGTTTATATGGAATTCGAGACTTTAACTAGAAAAGTTAGTCTAATGTAATTGTACCGAAAGCTTGAGTGGTTTATAAGTACATGTAGATTTATATTTCTCTCACGCTTGAAAGTACTCCAAAGCTTACCTTTGTAAAGGTAGACAGAAGGATAGGGATATTCACATTGTTGATTTCAAGACCTCATACTTGGAAATTTTACGAGTTTGAAATGTGCCAAGTGAATCATATAATACTACAATTTGAGCATA

Coding sequence (CDS)

ATGGCTTCAGCTCCTTCGAAGCTTTACGCAGATGATGTTAGCCTTTTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTGCTCTTCCGTTCTCCAAGTTTCTGTCTCATGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAACCAACTTAATGAGGTTGTGGTTATTGGTACTGGATATGCTTCATGCAAGTATTTATACAACTCGTCTTCTTACTCAAATCATGGCCTTGAAGATGGTAGAATGCCTGCACTTTGTACTCGTTTATTGAAGAATTTGGAGGAGTTCGTGATTGGGGATGAGCAGTCCATCAAGGAAGATCCCAAAGGAGGGACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCCTTGTGTTATATACAGAAAGTTTTCCGCTCTGGATCTCTCCATCCCCAACCACGAATCCTTTGCTTGCAGGGATCCCCAGATGGTCCTGAACAATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAGCGTTCAATGGTTCCTATAGATTCATGTTACATTGGTTCCCACAATTCTGCATTTCTTCAGCAGGCTTCTTACATAACGGGTGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGCTGTTTCAGTATCTCTCTACTGTTTTTGGCACCGATTTGCATTCCCGGACCTTTTTACAGCTTCCAAAATCTGTTGGTGTGGATTTTCGTGCATCGTGTTTTTGCCACAAGAAAACGATCGATATGGGCTATGTCTGTTCTGTTTGTTTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGTAA

Protein sequence

MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG*

Homology

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BLAST of Cucsa.178810.4 vs. Swiss-Prot
Match: TFB4_ARATH (RNA polymerase II transcription factor B subunit 4 OS=Arabidopsis thaliana GN=TFB4 PE=2 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.4e-115
Identity = 205/277 (74.01%), Postives = 235/277 (84.84%), Query Frame = 1


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           M +  SK Y+DDVSLLV+LLDTNP FWST+++ FS+FLSHVLAFLN++L LNQLN+VVVI
Sbjct: 1   MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGR---MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTM 120
            TGY+SC Y+Y+SS  SNHG  +     MPA+   LLK LEEFV  DE+  KE+     +
Sbjct: 61  ATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRI 120

Query: 121 SS-LLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVP 180
            S LLSGSLSMALCYIQ+VFRSG LHPQPRILCLQGSPDGPEQYVA+MN+IFSAQR MVP
Sbjct: 121 PSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVP 180

Query: 181 IDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGV 240
           IDSCYIG  NSAFLQQASYITGGV+  P+Q+DGLFQYL+T+F TDLHSR F+QLPK +GV
Sbjct: 181 IDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGV 240

Query: 241 DFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           DFRASCFCHKKTIDMGY+CSVCLSIFC+HHKKCSTCG
Sbjct: 241 DFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCG 277

[Close]

BLAST of Cucsa.178810.4 vs. Swiss-Prot
Match: TF2H3_DICDI (General transcription factor IIH subunit 3 OS=Dictyostelium discoideum GN=gtf2h3 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.0e-49
Identity = 105/252 (41.67%), Postives = 149/252 (59.13%), Query Frame = 1


Query: 34  FSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPA----- 93
           F+KFL H + F+N+ L+LNQ N++ +I +      +++  S+   +  E   +       
Sbjct: 92  FNKFLEHFMVFINAYLMLNQENQLAIICSKIGESSFVFPQSNIDQYQQEQQELEQRQLNE 151

Query: 94  ---LCTRLLKNLEEFVIGDEQS----IKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSL 153
              L     K ++  ++   Q     IK D +   +SS  S S+S+ALCYI ++ R    
Sbjct: 152 NGELLPTPNKTIQGQILAKLQKLDLEIKHD-QTDILSSSFSASMSIALCYINRIKRETPT 211

Query: 154 HPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVY 213
             +PRIL    SPD   QY+++MN IFS+Q+  +P+DSC +   +S FLQQAS++T G+Y
Sbjct: 212 I-KPRILVFNISPDVSSQYISVMNCIFSSQKQSIPVDSCILSQSDSTFLQQASHLTSGIY 271

Query: 214 LKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSI 273
           LKPQ+ + L QYL T F  D  SR  L  P    VD+RASCFCHK+ +D+GYVCSVCLSI
Sbjct: 272 LKPQKQELLSQYLLTTFLLDTLSRKSLAYPTLKSVDYRASCFCHKRIVDIGYVCSVCLSI 331

[Close]

BLAST of Cucsa.178810.4 vs. Swiss-Prot
Match: TF2H3_HUMAN (General transcription factor IIH subunit 3 OS=Homo sapiens GN=GTF2H3 PE=1 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 4.5e-45
Identity = 109/286 (38.11%), Postives = 162/286 (56.64%), Query Frame = 1


Query: 11  DDVSLLVVLLDTNPFFWSTSALPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYA 70
           D+++LLV+++D NP +W   AL  S+F     +  V+   NS L +N+ N++ VI +   
Sbjct: 6   DELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQ 65

Query: 71  SCKYLY---------------NSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSI-- 130
             ++LY               N   ++  G +DG+       LL +  E ++ + + +  
Sbjct: 66  ESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKY-----ELLTSANEVIVEEIKDLMT 125

Query: 131 KEDPKGGTMSSLLSGSLSMALCYIQKVFRS--GSLHPQPRILCLQGSPDGPEQYVAIMNA 190
           K D KG    +LL+GSL+ ALCYI ++ +    +   + RIL ++ + D   QY+  MN 
Sbjct: 126 KSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNV 185

Query: 191 IFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRT 250
           IF+AQ+  + ID+C + S +S  LQQA  ITGG+YLK  QM  L QYL  VF  D   R+
Sbjct: 186 IFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRS 245

Query: 251 FLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTC 273
            L LP  V VD+RA+CFCH+  I++GYVCSVCLSIFC     C+TC
Sbjct: 246 QLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTC 285

[Close]

BLAST of Cucsa.178810.4 vs. Swiss-Prot
Match: TF2H3_BOVIN (General transcription factor IIH subunit 3 OS=Bos taurus GN=GTF2H3 PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.3e-44
Identity = 110/285 (38.60%), Postives = 159/285 (55.79%), Query Frame = 1


Query: 11  DDVSLLVVLLDTNPFFWSTSALPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYA 70
           D+++LLV+++DTNP +W   AL  S+F     +  V+   NS L +N+ N++ VI +   
Sbjct: 6   DELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQ 65

Query: 71  SCKYLYN----------------SSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIK 130
             ++LY                 SS ++  G +DG+   L        EE     +   K
Sbjct: 66  ESRFLYPGKNGRLGDFFGDPGNPSSEFTPSGSKDGKYELLTAANEVIAEEI---KDLMTK 125

Query: 131 EDPKGGTMSSLLSGSLSMALCYIQKVFRS--GSLHPQPRILCLQGSPDGPEQYVAIMNAI 190
            D +G    +LL+GSL+ ALCYI ++ +    +   + RIL ++ + D   QY+  MN I
Sbjct: 126 SDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVI 185

Query: 191 FSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTF 250
           F+AQ+  + ID+C + S +S  LQQA  ITGG+YLK  QM  L QYL  VF  D   R+ 
Sbjct: 186 FAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQ 245

Query: 251 LQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTC 273
           L LP  V VD+RA+CFCH+  I++GYVCSVCLSIFC     C+TC
Sbjct: 246 LILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTC 286

[Close]

BLAST of Cucsa.178810.4 vs. Swiss-Prot
Match: TF2H3_MOUSE (General transcription factor IIH subunit 3 OS=Mus musculus GN=Gtf2h3 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.8e-44
Identity = 112/285 (39.30%), Postives = 159/285 (55.79%), Query Frame = 1


Query: 11  DDVSLLVVLLDTNPFFWSTSALPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYA 70
           D+++LLV+++DTNP +W   AL  S+F     +  V+   NS L +N+ N++ VI +   
Sbjct: 6   DELNLLVIIVDTNPIWWGKQALKESQFTLSKCMDAVMVLANSHLFMNRSNQLAVIASHIQ 65

Query: 71  SCKYLYNSSSYSNHGLED-----GRMPALCT---------RLLKNLEEFVIGDEQSI--K 130
             + LY      N GL D     G     C           LL    E +  + + +  K
Sbjct: 66  ESRLLYPGK---NGGLGDFFGDPGNALPDCNPSGSKDGKYELLTVANEVIAEEIKDLMTK 125

Query: 131 EDPKGGTMSSLLSGSLSMALCYIQKVFRS--GSLHPQPRILCLQGSPDGPEQYVAIMNAI 190
            D KG    +LL+GSL+ ALCYI +V ++   +   + RIL ++ + D   QY+  MN I
Sbjct: 126 SDIKGQHTETLLAGSLAKALCYIHRVNKAVKDNQEMKSRILVIKAAEDSALQYMNFMNVI 185

Query: 191 FSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTF 250
           F+AQ+  + ID+C + S +S  LQQA  ITGG+YLK  QM  L QYL  VF  D   R+ 
Sbjct: 186 FAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQ 245

Query: 251 LQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTC 273
           L LP  + VD+RA+CFCH+  I++GYVCSVCLSIFC     C+TC
Sbjct: 246 LILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTC 286

[Close]

BLAST of Cucsa.178810.4 vs. TrEMBL
Match: A0A0A0LMM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072450 PE=4 SV=1)

HSP 1 Score: 556.6 bits (1433), Expect = 1.7e-155
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 273

[Close]

BLAST of Cucsa.178810.4 vs. TrEMBL
Match: M5XYU6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009386mg PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 1.1e-127
Identity = 229/273 (83.88%), Postives = 247/273 (90.48%), Query Frame = 1


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLL+VLLDTNPFFWS+S+LPFS FLSHVL FLNSIL+LNQLN+VVVI
Sbjct: 1   MASAPSKLYADDVSLLMVLLDTNPFFWSSSSLPFSVFLSHVLTFLNSILLLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
            TGY SC Y+Y+SS+ +N G ++GRMPA C  LL+ LEEFVI DEQ IKE  + G  SSL
Sbjct: 61  ATGYNSCSYIYDSSTSTNQGSDNGRMPARCVNLLQKLEEFVIEDEQLIKEGLREGIASSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
           LSGSLSMALCYIQ+VFRSG LHPQPRILCLQGS DGPEQYVAIMNAIFSAQRS VPIDSC
Sbjct: 121 LSGSLSMALCYIQRVFRSGPLHPQPRILCLQGSSDGPEQYVAIMNAIFSAQRS-VPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240
           Y+GS NSAFLQQASYITGGVYLKPQQ +GLFQYLSTVF TDLHSR FLQLPKS+GVDFRA
Sbjct: 181 YMGSSNSAFLQQASYITGGVYLKPQQPNGLFQYLSTVFATDLHSRAFLQLPKSLGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           SCFCHKKTIDMGY+CSVCLSIFCKHHKKCSTCG
Sbjct: 241 SCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCG 272

[Close]

BLAST of Cucsa.178810.4 vs. TrEMBL
Match: A0A061FGT5_THECC (Basal transcription factor complex subunit-related isoform 1 OS=Theobroma cacao GN=TCM_035096 PE=4 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 4.0e-125
Identity = 219/273 (80.22%), Postives = 243/273 (89.01%), Query Frame = 1


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSL+VVL+DTNPFFWS S+L FS+FLSHVLAFLN+IL LNQLN+VVVI
Sbjct: 1   MASAPSKLYADDVSLVVVLVDTNPFFWSASSLSFSQFLSHVLAFLNAILTLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
            TGY SC Y+++SSS  N   E+GRMP +C+ LL+ LEEF+I DEQ  KE P+G   SSL
Sbjct: 61  ATGYNSCNYIFDSSSDLNQSFENGRMPVMCSSLLQKLEEFLIKDEQLSKEVPEGRIKSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
           LSGSLSMALCYIQ+VFRSG+LHP PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC
Sbjct: 121 LSGSLSMALCYIQRVFRSGALHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240
           Y+G+ NSAFLQQASYITGGV+ KPQ +DGLFQYL T+F TDLHSR+FL LPK VGVDFRA
Sbjct: 181 YMGAQNSAFLQQASYITGGVHHKPQHLDGLFQYLMTIFATDLHSRSFLHLPKPVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           SCFCHK TIDMGY+CSVCLSIFCKHHKKCSTCG
Sbjct: 241 SCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCG 273

[Close]

BLAST of Cucsa.178810.4 vs. TrEMBL
Match: E0CR79_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03100 PE=4 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 4.0e-125
Identity = 223/274 (81.39%), Postives = 245/274 (89.42%), Query Frame = 1


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MA  PSKLY+DDVSLLVVLLDTNPFFWST++LPFSKFLSHVLAFLNSIL++NQLN+VVVI
Sbjct: 1   MAPVPSKLYSDDVSLLVVLLDTNPFFWSTASLPFSKFLSHVLAFLNSILLINQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSY-SNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSS 120
            TG  SC ++++SSS  +N  LE+GRMPALC+ LL+ LEEFV GDE+  KE    G  SS
Sbjct: 61  ATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSS 120

Query: 121 LLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 180
           LLSGSLSMALCYIQ+VFR+G LHPQPRILCLQGSPDGPEQYVA+MNAIFSAQRSMVPIDS
Sbjct: 121 LLSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDS 180

Query: 181 CYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFR 240
           C IG+ +SAFLQQASYITGGVYLKPQQ+DGLFQYLSTVF TDLHSR FLQLPK  GVDFR
Sbjct: 181 CVIGAQHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDFR 240

Query: 241 ASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           ASCFCHK TIDMGY+CSVCLSIFCKHHKKCSTCG
Sbjct: 241 ASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCG 274

[Close]

BLAST of Cucsa.178810.4 vs. TrEMBL
Match: A0A067GM61_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022374mg PE=4 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 1.2e-124
Identity = 219/273 (80.22%), Postives = 245/273 (89.74%), Query Frame = 1


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLY+DDVSL+VVLLDTNPFFWS+S+L FS+FL+HVLAFLN+IL LNQLN+VVVI
Sbjct: 1   MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
            TGY SC Y+Y+SSS  N  + +GRMP+LC  LL+NLEEF+  DEQ  K++P+G    SL
Sbjct: 61  ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
           LSGSLSMALCYIQ+VFRSG LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC
Sbjct: 121 LSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240
           Y+G+ NSAFLQQASYITGGV+ KPQQ+DGLFQYL T+FGTDLHSR FLQLPK VGVDFRA
Sbjct: 181 YLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           SCFCHK TIDMGY+CSVCLSI+CKH KKCSTCG
Sbjct: 241 SCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCG 273

[Close]

BLAST of Cucsa.178810.4 vs. TAIR10
Match: AT1G18340.1 (AT1G18340.1 basal transcription factor complex subunit-related)

HSP 1 Score: 417.2 bits (1071), Expect = 8.1e-117
Identity = 205/277 (74.01%), Postives = 235/277 (84.84%), Query Frame = 1


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           M +  SK Y+DDVSLLV+LLDTNP FWST+++ FS+FLSHVLAFLN++L LNQLN+VVVI
Sbjct: 1   MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGR---MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTM 120
            TGY+SC Y+Y+SS  SNHG  +     MPA+   LLK LEEFV  DE+  KE+     +
Sbjct: 61  ATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRI 120

Query: 121 SS-LLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVP 180
            S LLSGSLSMALCYIQ+VFRSG LHPQPRILCLQGSPDGPEQYVA+MN+IFSAQR MVP
Sbjct: 121 PSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVP 180

Query: 181 IDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGV 240
           IDSCYIG  NSAFLQQASYITGGV+  P+Q+DGLFQYL+T+F TDLHSR F+QLPK +GV
Sbjct: 181 IDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGV 240

Query: 241 DFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           DFRASCFCHKKTIDMGY+CSVCLSIFC+HHKKCSTCG
Sbjct: 241 DFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCG 277

[Close]

BLAST of Cucsa.178810.4 vs. NCBI nr
Match: gi|449470273|ref|XP_004152842.1| (PREDICTED: general transcription factor IIH subunit 3 [Cucumis sativus])

HSP 1 Score: 556.6 bits (1433), Expect = 2.4e-155
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 273

[Close]

BLAST of Cucsa.178810.4 vs. NCBI nr
Match: gi|659082582|ref|XP_008441918.1| (PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH subunit 3 [Cucumis melo])

HSP 1 Score: 548.9 bits (1413), Expect = 5.0e-153
Identity = 269/273 (98.53%), Postives = 271/273 (99.27%), Query Frame = 1


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWSTS+LPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV IDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYL+TVFGTDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           SCFCHK TIDMGYVCSVCLSIFCKHHKKCSTCG
Sbjct: 241 SCFCHKXTIDMGYVCSVCLSIFCKHHKKCSTCG 273

[Close]

BLAST of Cucsa.178810.4 vs. NCBI nr
Match: gi|645225617|ref|XP_008219657.1| (PREDICTED: general transcription factor IIH subunit 3 [Prunus mume])

HSP 1 Score: 470.7 bits (1210), Expect = 1.7e-129
Identity = 230/273 (84.25%), Postives = 248/273 (90.84%), Query Frame = 1


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLL+VLLDTNPFFWS+S+LPFS FLSHVL FLNSIL+LNQLN+VVVI
Sbjct: 1   MASAPSKLYADDVSLLMVLLDTNPFFWSSSSLPFSVFLSHVLTFLNSILLLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
            TGY SC Y+Y+SS+ +N G ++GRMPA C  LL+ LEEFVI DEQ IKE  + G  SSL
Sbjct: 61  ATGYNSCSYIYDSSTSTNQGSDNGRMPARCVNLLQKLEEFVIKDEQLIKEGLREGIASSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
           LSGSLSMALCYIQ+VFRSG LHPQPRILCLQGS DGPEQYVAIMNAIFSAQRSMVPIDSC
Sbjct: 121 LSGSLSMALCYIQRVFRSGPLHPQPRILCLQGSSDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240
           Y+GS NSAFLQQASYITGGVYLKPQQ +GLFQYLSTVF TDLHSR FLQLPKS+GVDFRA
Sbjct: 181 YMGSSNSAFLQQASYITGGVYLKPQQPNGLFQYLSTVFATDLHSRAFLQLPKSLGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           SCFCHKKTIDMGY+CSVCLSIFCKHHKKCSTCG
Sbjct: 241 SCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCG 273

[Close]

BLAST of Cucsa.178810.4 vs. NCBI nr
Match: gi|694371044|ref|XP_009363173.1| (PREDICTED: general transcription factor IIH subunit 3 [Pyrus x bretschneideri])

HSP 1 Score: 465.3 bits (1196), Expect = 7.3e-128
Identity = 230/274 (83.94%), Postives = 246/274 (89.78%), Query Frame = 1


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLL+VLLDTNPFFWS+S LPFSKFL HVL FLNSIL+LNQLN+VVVI
Sbjct: 1   MASAPSKLYADDVSLLMVLLDTNPFFWSSSNLPFSKFLPHVLTFLNSILLLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGR-MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSS 120
            TGY SC Y+Y+SSS SN G + GR MPA C+ LL+ LEEFVI DEQ  KE  + G  SS
Sbjct: 61  ATGYNSCSYIYDSSSDSNQGSDHGRIMPARCSNLLQKLEEFVIKDEQLFKEGSREGISSS 120

Query: 121 LLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 180
           LLSGSLSMALCYIQ+VFRSG LHPQPRILCLQGS DGPEQYVAIMN+IFSAQRSMVPIDS
Sbjct: 121 LLSGSLSMALCYIQRVFRSGPLHPQPRILCLQGSSDGPEQYVAIMNSIFSAQRSMVPIDS 180

Query: 181 CYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFR 240
           CY+GS NSAFLQQASYITGGVYLKPQQ +GLFQYLSTVF TDLHSR FLQLPKS+GVDFR
Sbjct: 181 CYMGSSNSAFLQQASYITGGVYLKPQQPNGLFQYLSTVFATDLHSRAFLQLPKSLGVDFR 240

Query: 241 ASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           ASCFCHKKTIDMGY+CSVCLSIFCKHHKKCSTCG
Sbjct: 241 ASCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCG 274

[Close]

BLAST of Cucsa.178810.4 vs. NCBI nr
Match: gi|1009136759|ref|XP_015885697.1| (PREDICTED: RNA polymerase II transcription factor B subunit 4-like [Ziziphus jujuba])

HSP 1 Score: 464.2 bits (1193), Expect = 1.6e-127
Identity = 225/273 (82.42%), Postives = 246/273 (90.11%), Query Frame = 1


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           M +   KLYADDVSL++V LDTNPFFW+TS+LPFSKFLSHVL+FLNSI++LNQ N+VVVI
Sbjct: 1   MNAVAPKLYADDVSLVMVALDTNPFFWTTSSLPFSKFLSHVLSFLNSIMLLNQFNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
            TGY SC Y+Y+SS  ++HG E+G+MPALC+ LL+ LEEFVI D+Q  K+    G  SSL
Sbjct: 61  ATGYNSCDYIYDSSLATDHGSENGKMPALCSNLLQKLEEFVIRDQQQRKDGSGEGLPSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
           LSGSLSMALCYIQKVFRSG LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR MVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGPLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRLMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240
           YIGS+NSAFLQQASYITGGVYLKPQQ+DGLFQYLSTVF TDLHSR FLQLPKSVGVDFRA
Sbjct: 181 YIGSNNSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 274
           SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCG 273

The following BLAST results are available for this feature:

BLAST of Cucsa.178810.4 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TFB4_ARATH	1.4e-115	74.01	RNA polymerase II transcription factor B subunit 4 OS=Arabidopsis thaliana GN=TF...	[more]
TF2H3_DICDI	4.0e-49	41.67	General transcription factor IIH subunit 3 OS=Dictyostelium discoideum GN=gtf2h3...	[more]
TF2H3_HUMAN	4.5e-45	38.11	General transcription factor IIH subunit 3 OS=Homo sapiens GN=GTF2H3 PE=1 SV=2	[more]
TF2H3_BOVIN	1.3e-44	38.60	General transcription factor IIH subunit 3 OS=Bos taurus GN=GTF2H3 PE=2 SV=1	[more]
TF2H3_MOUSE	3.8e-44	39.30	General transcription factor IIH subunit 3 OS=Mus musculus GN=Gtf2h3 PE=1 SV=1	[more]

BLAST of Cucsa.178810.4 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMM2_CUCSA	1.7e-155	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072450 PE=4 SV=1	[more]
M5XYU6_PRUPE	1.1e-127	83.88	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009386mg PE=4 SV=1	[more]
A0A061FGT5_THECC	4.0e-125	80.22	Basal transcription factor complex subunit-related isoform 1 OS=Theobroma cacao ...	[more]
E0CR79_VITVI	4.0e-125	81.39	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03100 PE=4 SV=...	[more]
A0A067GM61_CITSI	1.2e-124	80.22	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022374mg PE=4 SV=1	[more]

BLAST of Cucsa.178810.4 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G18340.1	8.1e-117	74.01	basal transcription factor complex subunit-related	[more]

BLAST of Cucsa.178810.4 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470273\|ref\|XP_004152842.1\|	2.4e-155	100.00	PREDICTED: general transcription factor IIH subunit 3 [Cucumis sativus]	[more]
gi\|659082582\|ref\|XP_008441918.1\|	5.0e-153	98.53	PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH subunit 3 [Cucu...	[more]
gi\|645225617\|ref\|XP_008219657.1\|	1.7e-129	84.25	PREDICTED: general transcription factor IIH subunit 3 [Prunus mume]	[more]
gi\|694371044\|ref\|XP_009363173.1\|	7.3e-128	83.94	PREDICTED: general transcription factor IIH subunit 3 [Pyrus x bretschneideri]	[more]
gi\|1009136759\|ref\|XP_015885697.1\|	1.6e-127	82.42	PREDICTED: RNA polymerase II transcription factor B subunit 4-like [Ziziphus juj...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004600	TFIIH_Tfb4/GTF2H3

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0006289	nucleotide-excision repair

Vocabulary: **Cellular Component**
Term	Definition
GO:0000439	core TFIIH complex

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006366	transcription from RNA polymerase II promoter
cellular_component	GO:0000439	core TFIIH complex
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.178810	Cucsa.178810	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.178810.4	Cucsa.178810.4-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.178810.4.five_prime_UTR.1	Cucsa.178810.4.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.178810.4.CDS.1	Cucsa.178810.4.CDS.1	CDS
Cucsa.178810.4.CDS.2	Cucsa.178810.4.CDS.2	CDS
Cucsa.178810.4.CDS.3	Cucsa.178810.4.CDS.3	CDS
Cucsa.178810.4.CDS.4	Cucsa.178810.4.CDS.4	CDS
Cucsa.178810.4.CDS.5	Cucsa.178810.4.CDS.5	CDS
Cucsa.178810.4.CDS.6	Cucsa.178810.4.CDS.6	CDS
Cucsa.178810.4.CDS.7	Cucsa.178810.4.CDS.7	CDS
Cucsa.178810.4.CDS.8	Cucsa.178810.4.CDS.8	CDS
Cucsa.178810.4.CDS.9	Cucsa.178810.4.CDS.9	CDS
Cucsa.178810.4.CDS.10	Cucsa.178810.4.CDS.10	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.178810.4.three_prime_UTR.1	Cucsa.178810.4.three_prime_UTR.1	three_prime_UTR
Cucsa.178810.4.three_prime_UTR.2	Cucsa.178810.4.three_prime_UTR.2	three_prime_UTR
Cucsa.178810.4.three_prime_UTR.3	Cucsa.178810.4.three_prime_UTR.3	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004600	TFIIH subunit Tfb4/p34	PANTHER	PTHR12831	TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED	coord: 1..273 score: 7.8E
IPR004600	TFIIH subunit Tfb4/p34	PFAM	PF03850	Tfb4	coord: 13..273 score: 4.0