Cucsa.177370.2 (mRNA) Cucumber (Gy14) v1

Overview
NameCucsa.177370.2
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRad23 UV excision repair protein family
Locationscaffold01225 : 1394911 .. 1399795 (+)
Sequence length1654
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAAAAGCCAAGTGCCCAACTCACCGGTCGCGGTCTTCTTCCTACCAAATCTAGGGTTCTCTTCGATCTCTTTCCACTGCGTTTCAGGTTCTTTCCTCCTGAAACGCTGTCGTTTCTGTTCCTTCTCCATCTCCCCCCTTCTAGTTATTCGTCGAAATGAAGCTCACTGTCAAGACTCTCAAGGGAAGCCACTTCGAAATTAGGGTTCAGCTCACCGACACCGTAAGTTTTCACATTTCTATTTCTCGTTTTTTCCCCAACATTCTTTCTTGATGATATTTGGTTTTCTTTTTTCCAATTTATTAATGTAGCCGAGTACGCAAGCATTTACCCAGCTGGCAATATTGAGCTTAGTTTAATTGTTTTCTTTAATATAATTGGAACAGTGTGAATGTACTGGAGGAATTTTGTGGAATTAGAAGGATTTTGAAATTTGGGGCTCTCATGTTACTTAATCTGGAAGTTGCTTTCATTTCTGAACGACGATCATTATTTTTTtAAAAATATAAATTATTTGAATTGTTCGTGATCTGCTGGATTCGCATTGTTTGCACAGGCTGGGGGAGTTTAAGATATCGTGTAGTGCGCATTTCTTGTTGTGACGTTCACCCAGTTTTTGTAAATCTAGAAAGTTCAAAAATGATTTTAATCCTTTTATTTGAAACCCAAGGGGTGATTTTAAGCTCTTTATTTTGTTTGGAACGTGGAAGTTTTGAAATGAATGTAATTAAAACGTTGCTTGGATAGTAGCTGGGAAAAGAAGATTAATTGAATGAAAATTGTACTATTATGGGCTTTGTCTTGATTTATTAAAAGAAAATTAAAATATGTCAAGGTTAATTAAGTAATTTACCTCCAAATTCTATGAACTATTCAAAATCCATTCCATTTCTGTTAGAAATTTTTTAACGTAAAAGCAAGATAAATCATTCTCTTTTATACGATGAAAAACATCATAATTCCTTTAAAATATGTCATGTTTTGAAATCCTTCGAAGTTTTGAGCGACCAACCAAATTATAGTTTTGTTTTTtGTTTTTTGTTTTTtGAAATTTCTAATTGTAAAATTTATGGTGTAGGTGATGGCTGTCAAGAAAAATATTGAAGATGTACAAGGAAAGGATAATTATCCTTGTGGTCAACAATTATTGATACATAATGGCAAAGTTCTGAAAGATGAGAGTACACTGGCAGAAAACAAAGTATCTGAAGAAGGTTTTCTTGTTGTCATGCTCAGCAAGGTGTCCTTGGTCTTATAATTTTCTTAATGGAAGAAGCACTAAAGACATGTTTTtATTTTGAATTTTAATGAATGGCTGCAATATCAAATATGGTTATGCTCAATTGTATACATTTGCTTCTTCTGCAGAGCAAAACATCAGTCTCAGCAGGGCAGTCGTCAACTCAGGTAATGTTGACCTTTTCTTGCTGCAAATTGTTTATGATCAATTAATGGTAACTGTCTCTGGTTCCTGTTTATTGCAGCCTGCTCAAAACCCCCCTGTAGCTCAACCAGTTTTAAGTTCAACTCCTGCTGCCCAAGTTACTCCATCACCGACTCCTGCTGCCCAAGTTACTCCATCACCGACTCCTGCACCTCAAGCTCCCACTCAAGCACCCACTCAAGCACCATCATCGTTAGTTCTTCAAGAATGATCTTCAGTATGCATTTTCCTTTGATCGGTTGAGTAACTAAAATTCATATGCATTTTTTGCTCTTGGTTTTCAGTGCCCCGAAGAACACTACGTCTACTTCAGAAAGGGTGACAGATAAGTATGGCTTCTATTTCATATGCCTATTTTTTAACTTCAAGAGGCTTGAATTGGTTAGTAAATCACATTCTATTTCATAATACTAAATCAATGCTACAATATAACGTATGTCAAATCTGATATAAGCTACAGACCGGATGCACTTTATAGGAGTTTTTGATTATTAAGGGACGGACAGCTGAAATCAGAAAGCTTTGAGCAATATGTTTCCTCCTGTTTTCCTTTAGAGAAAGTTAGTCATTTTTTtGGGGGAATCATTTGCAGTGTACAAACCGATACCTATGGTCAAGCTGCTTCAAATTTGGTTGCTGGCAATAACCTGGAACAGACCGTTCAACAACTAATGGATATGGGTGGTGGCAACTGGGACAGAGAAACAGTTGTTCGTGCATTGAGAGCTGCTTATAACAATCCAGAGCGAGCAGTGGATTACTTGTACTCTGTATGCCTTAGTTCTACTGTGTGAATTCTCTTGTCTGGATGTTTCCAGTCACTAATGGTGTTTTTTTtGGTTTAGGGTATTCCGGAATCTGCAGAAGTTGCAGTGCCAGTGGGTCGTTTTGGTTCTGGTCAAGCCACTGAAACTGATGCATCTGTTCCTGCACCTGTTTCTGGAGCACCCAACACAGCCCCCTTGAATATGTTTCCTCAGGTAAGCTTTGATGCATGAAAAAGTCGTTTGTTTGTTTGCTCACATTCAGTTATTTTTAATTGGGCTGCAATCATGCAGGAGGCACTTTCTGCTGGCAGTGGTGGTGGCGGTGGCAACCTTGGATCTCTTGAATTCCTTAGAAACAATCCACAGGTAACTAGTACAACATCATCATTTATGGGGTTTTCTTGATTGATTAGCTTTTTAGCTTTCTGTACGCATTGAGTTTAGAAATCCGCACTTTGAAGTCCTTTCTCACCTAATGGTTGTGTTAGTTTTGCATCTTTTTCACACCCTTTCACGTTAGATGCATCCATTAAAAGTCACAAACGCTTGATTTAAAAGTTCACATATGGACTATATTAATCCATTTCATATCATTGCTTTCGATGTATCACTTACAGAGTCACAAAATCTTGTTTTGCTTTATTTTACATGGACTATGGCGTTGTATAGAATTAAATGGGAAGTACTTACTGAATGGGGTTTTCTATCATTGTGCATATTCTAGTTCCAAGCCCTGCGGACGATGGTGCATACAAACCCTCAAATCTTACAGGTTCACACATCCTTCTGCTTTACAATTTACTTGGTTGTTATACTTATGGTTTAGCCAAGAGTTCAATCTTTTGCTTCTGATGGCAGCCCATGCTTCAAGAACTTGGAAAGCAGAATCCCCAGCTTTTGAGACTCATTCAGGATCATCATGCAGAGTTCCTTCAGCTAATTAATGAACCCGTTGACAATTTCGAGGGGTGAGTCTTACACTACTGTCACCTGGTCAATCTTAAATCTTGTTCTTTTGTTAATTTGAAACCTCCTAGTTCTTCAGTTTGTTATTTGTGATTGATCACGAACAGTGTTTCTGAATGCCCAAAGCGCAATGGCCCTCTAGAGCCTAGGCGCAAGGCGCATGCTTTGTTTTTCTTTTtGTGCGTGTCATGAAAaTACTGCATTTTTTGAAGAGGATACGAGTCTCACTATTATTAATATTGAAAATAAAGAGACAAAGCTCAATGTACATAAGGGTTATATAAGAGCAATAGGAGGGGATGAAAATACTGCATTAAAAAGAAAAGACAGTTGAAGTGGAAATATGGAAAAGAAAATGACCCCAAACACAATAAATTTTGCATCTAGGCTTGGTTAGTAAACTTGATTCTTTTAGTTAATAAAGAAGGAAAACCCTTAATTATTGCTATTTTTTtAAATAATGAATAGGGCCTTGGGGCTTTGCAAATGGCACGTGGTTGAGGTGCACCATATTTTGTGAGCCTTGCCTTTCCAAGGTGAGGTGCTAGACCTATGCCTTGAGACTAGGTGCACCTAAACGCATGTGTGAGAGGGCTTTTTAAAACACTGATCACTGACATATAAGATGGCCACTGCATAGATAGCCTTTCTAGTTTTTCCATCATCAAATGCTCAGTGCTTCTGTTGTAGGTCCCTGCGTGGGATAATTATAGGTAATCAGGTCATGTGTAGTAATGGAAAGATAGTTTTTCCTTATTGCTCTTGATCTCCTATTAATGTTTAACCTTGTGTCAAACTACAACATCCATTTCCGCCAACTTGGCATTCCACCAGCACGGAATTAGTCAACACCAAAAGCACAAAATTCAATATTGTTGCACAGAATGTGCCTATCTGGATGATTTATGTGATTTATTTATTCTCTTGCTTAAAAGACTACAAATTGAGTCACCTTTTTTATCTAGTTGATAATGCCATAAATGGTCATTTGTAGAGCAAGTCAACCTAAGCATATAAGGTTATATAACCTCGACCACAAGTTGGTTGTGGTCAAAGTTTTGAATCTCCTAGCACTACCTCTTGAATTAGAAAAAGGAAAACAATGTGCCATCTGTGGAACAAGAACTATTTGTGGGTCTGATTTACCGGAGAGGACGCTCACATCGATTATTATTTTtGTTGAATGAACTTCTGTCATCACAGCATCTATCTATAGAACTATAAGCTATGTTTtCTTTTCAGAGAAATGTTTGAACAGGCTGAGCCGGACATGCCTCATGCCATTAATGTCACTCCAGCCGAACAGGCAGCCATCGAAAGGGTACGAACTCCTTTATATTCCTTGAGTGCGTTTTTtGTTTTCCATCTTCAAACTGGATCTCTGTGGTTAAATCCCTAATCCCTTTACTACTTGTTCCCTTATGTAGCTCGAGGCAATGGGATTTGATAGAGCATTGGTTATCGAGGCATTTTTGGCATGTGATCGCAATGAGGAACTAGCAGCTAACTACTTACTGGAGAATTCTGGAGATTTTGATGATTAACAAACGAACAATTAATGTTAACCACTCTGGATTCATTATTTTTGGTGCTGAGGTGAATTGATACCCTTTTCAGCATTCTTCACTTTCTGAGTCTTCTTTGCATTGCATTTTACATACTCTACTAATAAATAGGAAAATTAATTCTTCAAGTATGGTCTTCCCGA

mRNA sequence

GCAAAAGCCAAGTGCCCAACTCACCGGTCGCGGTCTTCTTCCTACCAAATCTAGGGTTCTCTTCGATCTCTTTCCACTGCGTTTCAGGTTCTTTCCTCCTGAAACGCTGTCGTTTCTGTTCCTTCTCCATCTCCCCCCTTCTAGTTATTCGTCGAAATGAAGCTCACTGTCAAGACTCTCAAGGGAAGCCACTTCGAAATTAGGGTTCAGCTCACCGACACCGTGATGGCTGTCAAGAAAAATATTGAAGATGTACAAGGAAAGGATAATTATCCTTGTGGTCAACAATTATTGATACATAATGGCAAAGTTCTGAAAGATGAGAGTACACTGGCAGAAAACAAAGTATCTGAAGAAGGTTTTCTTGTTGTCATGCTCAGCAAGGTGTCCTTGGTCTTATAATTTTCTTAATGGAAGAAGCACTAAAGACATGTTTTTATTTTGAATTTTAATGAATGGCTGCAATATCAAATATGGTTATGCTCAATTGTATACATTTGCTTCTTCTGCAGAGCAAAACATCAGTCTCAGCAGGGCAGTCGTCAACTCAGCCTGCTCAAAACCCCCCTGTAGCTCAACCAGTTTTAAGTTCAACTCCTGCTGCCCAAGTTACTCCATCACCGACTCCTGCTGCCCAAGTTACTCCATCACCGACTCCTGCACCTCAAGCTCCCACTCAAGCACCCACTCAAGCACCATCATCTGCCCCGAAGAACACTACGTCTACTTCAGAAAGGGTGACAGATAATGTACAAACCGATACCTATGGTCAAGCTGCTTCAAATTTGGTTGCTGGCAATAACCTGGAACAGACCGTTCAACAACTAATGGATATGGGTGGTGGCAACTGGGACAGAGAAACAGTTGTTCGTGCATTGAGAGCTGCTTATAACAATCCAGAGCGAGCAGTGGATTACTTGTACTCTGGTATTCCGGAATCTGCAGAAGTTGCAGTGCCAGTGGGTCGTTTTGGTTCTGGTCAAGCCACTGAAACTGATGCATCTGTTCCTGCACCTGTTTCTGGAGCACCCAACACAGCCCCCTTGAATATGTTTCCTCAGGAGGCACTTTCTGCTGGCAGTGGTGGTGGCGGTGGCAACCTTGGATCTCTTGAATTCCTTAGAAACAATCCACAGTTCCAAGCCCTGCGGACGATGGTGCATACAAACCCTCAAATCTTACAGCCCATGCTTCAAGAACTTGGAAAGCAGAATCCCCAGCTTTTGAGACTCATTCAGGATCATCATGCAGAGTTCCTTCAGCTAATTAATGAACCCGTTGACAATTTCGAGGGAGAAATGTTTGAACAGGCTGAGCCGGACATGCCTCATGCCATTAATGTCACTCCAGCCGAACAGGCAGCCATCGAAAGGCTCGAGGCAATGGGATTTGATAGAGCATTGGTTATCGAGGCATTTTTGGCATGTGATCGCAATGAGGAACTAGCAGCTAACTACTTACTGGAGAATTCTGGAGATTTTGATGATTAACAAACGAACAATTAATGTTAACCACTCTGGATTCATTATTTTTGGTGCTGAGGTGAATTGATACCCTTTTCAGCATTCTTCACTTTCTGAGTCTTCTTTGCATTGCATTTTACATACTCTACTAATAAATAGGAAAATTAATTCTTCAAGTATGGTCTTCCCGA

Coding sequence (CDS)

ATGGCTGCAATATCAAATATGGTTATGCTCAATTGTATACATTTGCTTCTTCTGCAGAGCAAAACATCAGTCTCAGCAGGGCAGTCGTCAACTCAGCCTGCTCAAAACCCCCCTGTAGCTCAACCAGTTTTAAGTTCAACTCCTGCTGCCCAAGTTACTCCATCACCGACTCCTGCTGCCCAAGTTACTCCATCACCGACTCCTGCACCTCAAGCTCCCACTCAAGCACCCACTCAAGCACCATCATCTGCCCCGAAGAACACTACGTCTACTTCAGAAAGGGTGACAGATAATGTACAAACCGATACCTATGGTCAAGCTGCTTCAAATTTGGTTGCTGGCAATAACCTGGAACAGACCGTTCAACAACTAATGGATATGGGTGGTGGCAACTGGGACAGAGAAACAGTTGTTCGTGCATTGAGAGCTGCTTATAACAATCCAGAGCGAGCAGTGGATTACTTGTACTCTGGTATTCCGGAATCTGCAGAAGTTGCAGTGCCAGTGGGTCGTTTTGGTTCTGGTCAAGCCACTGAAACTGATGCATCTGTTCCTGCACCTGTTTCTGGAGCACCCAACACAGCCCCCTTGAATATGTTTCCTCAGGAGGCACTTTCTGCTGGCAGTGGTGGTGGCGGTGGCAACCTTGGATCTCTTGAATTCCTTAGAAACAATCCACAGTTCCAAGCCCTGCGGACGATGGTGCATACAAACCCTCAAATCTTACAGCCCATGCTTCAAGAACTTGGAAAGCAGAATCCCCAGCTTTTGAGACTCATTCAGGATCATCATGCAGAGTTCCTTCAGCTAATTAATGAACCCGTTGACAATTTCGAGGGAGAAATGTTTGAACAGGCTGAGCCGGACATGCCTCATGCCATTAATGTCACTCCAGCCGAACAGGCAGCCATCGAAAGGCTCGAGGCAATGGGATTTGATAGAGCATTGGTTATCGAGGCATTTTTGGCATGTGATCGCAATGAGGAACTAGCAGCTAACTACTTACTGGAGAATTCTGGAGATTTTGATGATTAA

Protein sequence

MAAISNMVMLNCIHLLLLQSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQVTPSPTPAPQAPTQAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFDD*
Homology
[Close]
BLAST of Cucsa.177370.2 vs. Swiss-Prot
Match: RD23B_ARATH (Ubiquitin receptor RAD23b OS=Arabidopsis thaliana GN=RAD23B PE=1 SV=3)

HSP 1 Score: 384.0 bits (985), Expect = 1.7e-105
Identity = 208/333 (62.46%), Postives = 250/333 (75.08%), Query Frame = 1 

Query: 15  LLLLQSKTSVSAGQSSTQPAQ-NPPVAQPVLSSTPAAQVTPSPTPAAQVTPSPTPAPQAP 74
           ++L +SK+  SAGQ+S Q +  + PV+    S+ PAA   PS T ++ V  SP PA + P
Sbjct: 72  VMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAA---PSTTQSSPVPASPIPAQEQP 131

Query: 75  TQAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWD 134
                                     QTDTYGQAAS LV+G++LEQ VQQ+M+MGGG+WD
Sbjct: 132 A------------------------AQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWD 191

Query: 135 RETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPN 194
           +ETV RALRAAYNNPERAVDYLYSGIP++AEVAVPV      Q   + A+  AP SG PN
Sbjct: 192 KETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPV---PEAQIAGSGAAPVAPASGGPN 251

Query: 195 TAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQN 254
           ++PL++FPQE ++A    G G+LG+LEFLRNN QFQ LRTMVH+NPQILQPMLQELGKQN
Sbjct: 252 SSPLDLFPQETVAA---AGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQN 311

Query: 255 PQLLRLIQDHHAEFLQLINEPVD--NFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMG 314
           PQLLRLIQ++ AEFLQL+NEP +  + EG+MF+Q E +MPHAINVTPAEQ AI+RLEAMG
Sbjct: 312 PQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMG 371

Query: 315 FDRALVIEAFLACDRNEELAANYLLENSGDFDD 345
           FDRALVIEAFLACDRNEELAANYLLENSGDF+D
Sbjct: 372 FDRALVIEAFLACDRNEELAANYLLENSGDFED 371

[Close]
BLAST of Cucsa.177370.2 vs. Swiss-Prot
Match: RD23A_ARATH (Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana GN=RAD23A PE=1 SV=2)

HSP 1 Score: 345.1 bits (884), Expect = 8.7e-94
Identity = 191/333 (57.36%), Postives = 240/333 (72.07%), Query Frame = 1 

Query: 15  LLLLQSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQVTPS-PTPAPQAP 74
           ++L +SKT+ SAG SSTQP         + S+T AA   PS T +  V  S  TP  + P
Sbjct: 72  VMLSKSKTASSAGPSSTQPTST--TTSTISSTTLAA---PSTTQSIAVPASNSTPVQEQP 131

Query: 75  TQAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWD 134
           T                         Q+DTYGQAAS LV+G+++EQ VQQ+M+MGGG+WD
Sbjct: 132 T------------------------AQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWD 191

Query: 135 RETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPN 194
           +ETV RALRAAYNNPERAVDYLYSGIPE+  V +P     SG  +  + + P P SG PN
Sbjct: 192 KETVTRALRAAYNNPERAVDYLYSGIPET--VTIPATNL-SGVGSGRELTAPPP-SGGPN 251

Query: 195 TAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQN 254
           ++PL++FPQEA+   S   GG+LG+LEFLR N QFQ LR+MV++NPQILQPMLQELGKQN
Sbjct: 252 SSPLDLFPQEAV---SDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQN 311

Query: 255 PQLLRLIQDHHAEFLQLINEPVDNFEG--EMFEQAEPDMPHAINVTPAEQAAIERLEAMG 314
           PQLLRLIQ++ AEFLQL+NEP +  +G  ++F+Q + +MPH++NVTP EQ +IERLEAMG
Sbjct: 312 PQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMG 368

Query: 315 FDRALVIEAFLACDRNEELAANYLLENSGDFDD 345
           FDRA+VIEAFL+CDRNEELAANYLLE+S DF+D
Sbjct: 372 FDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368

[Close]
BLAST of Cucsa.177370.2 vs. Swiss-Prot
Match: RD23D_ARATH (Ubiquitin receptor RAD23d OS=Arabidopsis thaliana GN=RAD23D PE=1 SV=2)

HSP 1 Score: 327.8 bits (839), Expect = 1.4e-88
Identity = 180/336 (53.57%), Postives = 220/336 (65.48%), Query Frame = 1 

Query: 15  LLLLQSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQVTPSPTPAPQAPT 74
           ++++ SKT  S   +ST  A  P   QP   +TP                    AP A  
Sbjct: 69  IVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVS-----------------APTASV 128

Query: 75  QAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDR 134
             PT   ++A    T+ S      VQTD YGQAASNLVAG  LE TVQQ++DMGGG+WDR
Sbjct: 129 PVPTSGTATAAAPATAAS------VQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDR 188

Query: 135 ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQ------ATETDASVPAPV 194
           +TVVRALRAA+NNPERAV+YLYSGIP  AE+        +G+      A    A+ PA  
Sbjct: 189 DTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAA 248

Query: 195 SGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQE 254
           +G PN  PLN+FPQ   +A +G G GN   L+FLRN+ QFQALR MV  NPQILQPMLQE
Sbjct: 249 TGGPNANPLNLFPQGMPAADAGAGAGN---LDFLRNSQQFQALRAMVQANPQILQPMLQE 308

Query: 255 LGKQNPQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLE 314
           LGKQNPQL+RLIQ+H A+FL+LINEPV+  E  M EQ E  MP A+ VTP E+ AIERLE
Sbjct: 309 LGKQNPQLVRLIQEHQADFLRLINEPVEGEENVM-EQLEAAMPQAVTVTPEEREAIERLE 368

Query: 315 AMGFDRALVIEAFLACDRNEELAANYLLENSGDFDD 345
            MGFDRA+V+E F AC++NEELAANYLL++  +F+D
Sbjct: 369 GMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377

[Close]
BLAST of Cucsa.177370.2 vs. Swiss-Prot
Match: RD23C_ARATH (Ubiquitin receptor RAD23c OS=Arabidopsis thaliana GN=RAD23C PE=1 SV=2)

HSP 1 Score: 316.6 bits (810), Expect = 3.3e-85
Identity = 183/342 (53.51%), Postives = 225/342 (65.79%), Query Frame = 1 

Query: 22  TSVSAGQS---STQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQVTPSPTPAPQAPTQAPT 81
           +S SAG S   S  P+ + P   P   ++ +A V P+PT      P+PTPAP A T+  T
Sbjct: 85  SSASAGTSQAKSIPPSTSQPSISPQTPASVSAPVAPAPTRPPPPAPTPTPAPVAATETVT 144

Query: 82  QAPSSAPKNTTSTSERVTDNV----QTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDR 141
                    T S+S    D+     Q D YGQAASNL AG+NLE T+QQ++DMGGG WDR
Sbjct: 145 TPIPEPVPATISSSTPAPDSAPVGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDR 204

Query: 142 ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGR--FGSGQ----ATETDASVPAPV 201
           ETVV ALRAA+NNPERAV+YLY+GIPE AEV  PV R    +GQ      +T     AP 
Sbjct: 205 ETVVLALRAAFNNPERAVEYLYTGIPEQAEVP-PVARPPASAGQPANPPAQTQQPAAAPA 264

Query: 202 SGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQE 261
           SG PN  PL++FPQ   + G   G    G+L+FLRN+ QFQALR MV  NPQ+LQPMLQE
Sbjct: 265 SG-PNANPLDLFPQGLPNVGGNPGA---GTLDFLRNSQQFQALRAMVQANPQVLQPMLQE 324

Query: 262 LGKQNPQLLRLIQDHHAEFLQLINEPVD------NFEGEMFEQAEPDMPHAINVTPAEQA 321
           LGKQNP L+RLIQDH A+FL+LINEPV+      N  G+M   A    P AI VT  E+ 
Sbjct: 325 LGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQM--AAGMPQPQAIQVTHEERE 384

Query: 322 AIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFDD 345
           AIERLEAMGF+RALV+E F AC++NEELAANYLL++  +F++
Sbjct: 385 AIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419

[Close]
BLAST of Cucsa.177370.2 vs. Swiss-Prot
Match: RAD23_ORYSJ (Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 289.7 bits (740), Expect = 4.3e-77
Identity = 155/310 (50.00%), Postives = 204/310 (65.81%), Query Frame = 1 

Query: 45  SSTPAAQVTPS-PTPAAQVTPSPTPAPQAP----TQAPTQAPSSAPKNTTSTSERVTDNV 104
           SS PA    PS   P  Q  P+  PA QAP    T  P    +  P  T S +  V  + 
Sbjct: 82  SSAPATSKAPSNQAPPTQTVPA-APASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSS 141

Query: 105 QTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGI 164
           + D YGQA SNLVAG+NLE T+Q +++MGGG WDR+ V+ AL AA+NNPERAV+YLYSG+
Sbjct: 142 EADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGV 201

Query: 165 PESAEVAVPVGRFGSGQATE----TDASVPAPVSGAPNTAPLNMFPQEALSAGSGGGGGN 224
           PE  ++ VP         T+    T  + P+ +S  PN +PL++FPQ   +A +   G  
Sbjct: 202 PEQMDIPVPPPSIQPANPTQASQATQPAAPSILSSGPNASPLDLFPQALPNASTDAAG-- 261

Query: 225 LGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPV 284
           LG+L+ LRNN QF+ L ++V  NPQILQP+LQELGKQNPQ+L+LIQ++ AEFL LINEP 
Sbjct: 262 LGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPA 321

Query: 285 DNFEGE-MFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACDRNEELAANY 344
           +  + E + +Q    MP  I VTP E  AI RLEAMGFDRALV++ F AC+++E+LAANY
Sbjct: 322 EGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANY 381

[Close]
BLAST of Cucsa.177370.2 vs. TrEMBL
Match: A0A0A0LF05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710740 PE=4 SV=1)

HSP 1 Score: 622.5 bits (1604), Expect = 3.1e-175
Identity = 316/330 (95.76%), Postives = 319/330 (96.67%), Query Frame = 1 

Query: 15  LLLLQSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQVTPSPTPAPQAPT 74
           ++L +SKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQV          TPSPTPAPQAPT
Sbjct: 72  VMLSKSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQV----------TPSPTPAPQAPT 131

Query: 75  QAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDR 134
           QAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDR
Sbjct: 132 QAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDR 191

Query: 135 ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNT 194
           ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNT
Sbjct: 192 ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNT 251

Query: 195 APLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNP 254
           APLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNP
Sbjct: 252 APLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNP 311

Query: 255 QLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDR 314
           QLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDR
Sbjct: 312 QLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDR 371

Query: 315 ALVIEAFLACDRNEELAANYLLENSGDFDD 345
           ALVIEAFLACDRNEELAANYLLENSGDFDD
Sbjct: 372 ALVIEAFLACDRNEELAANYLLENSGDFDD 391

[Close]
BLAST of Cucsa.177370.2 vs. TrEMBL
Match: A0A061GC26_THECC (Rad23 UV excision repair protein family isoform 1 OS=Theobroma cacao GN=TCM_029286 PE=4 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 1.7e-125
Identity = 240/330 (72.73%), Postives = 265/330 (80.30%), Query Frame = 1 

Query: 15  LLLLQSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQVTPSPTPAPQAPT 74
           ++L +SK+  SAG SS QPA +                TPS TP A    +P PAP+AP 
Sbjct: 72  VMLSKSKSLGSAGTSSAQPASS----------------TPSVTPPAS---NPAPAPEAPA 131

Query: 75  QAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDR 134
           QAPT       K TTS S+  T N  TDTY QAASNLVAGNNLEQT+QQLMDMGGGNWD+
Sbjct: 132 QAPTS------KGTTSASDTATANPNTDTYSQAASNLVAGNNLEQTIQQLMDMGGGNWDK 191

Query: 135 ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNT 194
           ETV RALRAAYNNPERAVDYLYSGIPESAEVAVPVGRF + Q TET A+  APVSGAPN+
Sbjct: 192 ETVTRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFPTSQTTETGAAPAAPVSGAPNS 251

Query: 195 APLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNP 254
           +PLNMFPQE LS   G G G LGSL+FLRNN QFQALR+MV +NPQILQPMLQELGKQNP
Sbjct: 252 SPLNMFPQETLS---GAGAGGLGSLDFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNP 311

Query: 255 QLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDR 314
           QLLRLIQ+HHAEFLQLINEP++  EG++F+QAE DMPHAINVTPAEQ AIERLEAMGFDR
Sbjct: 312 QLLRLIQEHHAEFLQLINEPLEGSEGDIFDQAEQDMPHAINVTPAEQEAIERLEAMGFDR 371

Query: 315 ALVIEAFLACDRNEELAANYLLENSGDFDD 345
           ALVIEAFLACDRNEELAANYLLEN+GDF+D
Sbjct: 372 ALVIEAFLACDRNEELAANYLLENAGDFED 373

[Close]
BLAST of Cucsa.177370.2 vs. TrEMBL
Match: A0A067LCU6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26942 PE=4 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 4.5e-121
Identity = 234/331 (70.69%), Postives = 264/331 (79.76%), Query Frame = 1 

Query: 15  LLLLQSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQVTPSPTPAPQAPT 74
           ++L +SKTS S G SS+        AQP   + P    TP+ TPAA+V            
Sbjct: 49  VMLSKSKTSSSTGTSSSS-------AQPAAVTPPTTAATPNLTPAAEV------------ 108

Query: 75  QAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDR 134
               QAP S  K+TTS SE  T   QTDTYGQAASNLVAG+NLEQT+QQ+MD+GGGNWD+
Sbjct: 109 ----QAPIS--KSTTSASETATATAQTDTYGQAASNLVAGSNLEQTIQQIMDIGGGNWDK 168

Query: 135 ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNT 194
           ETV RALRAAYNNPERAVDYLYSGIPE+AEVAVP  RF +GQAT+T AS  AP SGAPNT
Sbjct: 169 ETVTRALRAAYNNPERAVDYLYSGIPETAEVAVP--RFAAGQATDTGASPTAPASGAPNT 228

Query: 195 APLNMFPQEALSAGSGGGG-GNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQN 254
           +PLNMFPQE LSAG G GG G LGSL+FLRNN QFQALR+MV  NPQILQPMLQELGKQN
Sbjct: 229 SPLNMFPQETLSAGGGSGGTGGLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQN 288

Query: 255 PQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFD 314
           PQLLR+IQ+H+AEFLQLINEP++  EG++F+Q + DMPHAINVTPAEQ AIERLEAMGFD
Sbjct: 289 PQLLRMIQEHNAEFLQLINEPLEGSEGDIFDQVDQDMPHAINVTPAEQEAIERLEAMGFD 348

Query: 315 RALVIEAFLACDRNEELAANYLLENSGDFDD 345
           RALVIEAFLACDRNEELAANYLLEN+GDF+D
Sbjct: 349 RALVIEAFLACDRNEELAANYLLENAGDFED 352

[Close]
BLAST of Cucsa.177370.2 vs. TrEMBL
Match: A0A059AJF1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03137 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 8.4e-120
Identity = 234/331 (70.69%), Postives = 264/331 (79.76%), Query Frame = 1 

Query: 15  LLLLQSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQVTPS-PTPAPQAP 74
           +L  QSK S SAG SSTQPA          ++T AA  T + T AA   PS P+PAP AP
Sbjct: 73  MLSKQSKISGSAGTSSTQPASTTAATT---AATTAA--TTAATTAATTAPSNPSPAPDAP 132

Query: 75  TQAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWD 134
            QAP       P   TSTSE  T NV +D Y QAAS+LVAGNNLE+++QQLMDMGGG W+
Sbjct: 133 AQAP-------PSKGTSTSEGSTANVPSDAYSQAASHLVAGNNLEESIQQLMDMGGGTWE 192

Query: 135 RETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPN 194
           RE VVRALRAAYNNPERAVDYLYSGIPESAE+AVP G   + QA E  A+ P P SGAPN
Sbjct: 193 REMVVRALRAAYNNPERAVDYLYSGIPESAEIAVP-GVHPASQANEAGAAAPVPTSGAPN 252

Query: 195 TAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQN 254
           T+PLN+FPQEALS+ +GGGG  LG+L+FLRNN QFQALR+MV  NPQILQPMLQELGKQN
Sbjct: 253 TSPLNLFPQEALSSAAGGGG--LGTLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQN 312

Query: 255 PQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFD 314
           PQLLRLIQ+HHAEFLQLINEP+D  EG++F+Q + DMPHAINVTPAEQ AIERLEAMGFD
Sbjct: 313 PQLLRLIQEHHAEFLQLINEPLDGSEGDIFDQPDQDMPHAINVTPAEQEAIERLEAMGFD 372

Query: 315 RALVIEAFLACDRNEELAANYLLENSGDFDD 345
           RALVIEAFLACDRNEELAANYLLE++GDF+D
Sbjct: 373 RALVIEAFLACDRNEELAANYLLEHAGDFED 388

[Close]
BLAST of Cucsa.177370.2 vs. TrEMBL
Match: A0A059AIX4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03137 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 1.1e-119
Identity = 233/331 (70.39%), Postives = 265/331 (80.06%), Query Frame = 1 

Query: 15  LLLLQSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQVTPS-PTPAPQAP 74
           ++L +SK S SAG SSTQPA          ++T AA  T + T AA   PS P+PAP AP
Sbjct: 72  VMLSKSKISGSAGTSSTQPASTTAATT---AATTAA--TTAATTAATTAPSNPSPAPDAP 131

Query: 75  TQAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWD 134
            QAP       P   TSTSE  T NV +D Y QAAS+LVAGNNLE+++QQLMDMGGG W+
Sbjct: 132 AQAP-------PSKGTSTSEGSTANVPSDAYSQAASHLVAGNNLEESIQQLMDMGGGTWE 191

Query: 135 RETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPN 194
           RE VVRALRAAYNNPERAVDYLYSGIPESAE+AVP G   + QA E  A+ P P SGAPN
Sbjct: 192 REMVVRALRAAYNNPERAVDYLYSGIPESAEIAVP-GVHPASQANEAGAAAPVPTSGAPN 251

Query: 195 TAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQN 254
           T+PLN+FPQEALS+ +GGGG  LG+L+FLRNN QFQALR+MV  NPQILQPMLQELGKQN
Sbjct: 252 TSPLNLFPQEALSSAAGGGG--LGTLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQN 311

Query: 255 PQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFD 314
           PQLLRLIQ+HHAEFLQLINEP+D  EG++F+Q + DMPHAINVTPAEQ AIERLEAMGFD
Sbjct: 312 PQLLRLIQEHHAEFLQLINEPLDGSEGDIFDQPDQDMPHAINVTPAEQEAIERLEAMGFD 371

Query: 315 RALVIEAFLACDRNEELAANYLLENSGDFDD 345
           RALVIEAFLACDRNEELAANYLLE++GDF+D
Sbjct: 372 RALVIEAFLACDRNEELAANYLLEHAGDFED 387

[Close]
BLAST of Cucsa.177370.2 vs. TAIR10
Match: AT1G79650.4 (AT1G79650.4 Rad23 UV excision repair protein family)

HSP 1 Score: 384.0 bits (985), Expect = 9.5e-107
Identity = 208/333 (62.46%), Postives = 251/333 (75.38%), Query Frame = 1 

Query: 15  LLLLQSKTSVSAGQSSTQPAQ-NPPVAQPVLSSTPAAQVTPSPTPAAQVTPSPTPAPQAP 74
           ++L +SK+  SAGQ+S Q +  + PV+    S+ PAA   PS T ++ V  SP PA + P
Sbjct: 72  VMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAA---PSTTQSSPVPASPIPAQEQP 131

Query: 75  TQAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWD 134
                    +                QTDTYGQAAS LV+G++LEQ VQQ+M+MGGG+WD
Sbjct: 132 AVYAFVFSFAGLAFCPLYGFPKVSMAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWD 191

Query: 135 RETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPN 194
           +ETV RALRAAYNNPERAVDYLYSGIP++AEVAVPV      Q   + A+  AP SG PN
Sbjct: 192 KETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPV---PEAQIAGSGAAPVAPASGGPN 251

Query: 195 TAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQN 254
           ++PL++FPQE ++A    G G+LG+LEFLRNN QFQ LRTMVH+NPQILQPMLQELGKQN
Sbjct: 252 SSPLDLFPQETVAA---AGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQN 311

Query: 255 PQLLRLIQDHHAEFLQLINEPVD--NFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMG 314
           PQLLRLIQ++ AEFLQL+NEP +  + EG+MF+Q E +MPHAINVTPAEQ AI+RLEAMG
Sbjct: 312 PQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMG 371

Query: 315 FDRALVIEAFLACDRNEELAANYLLENSGDFDD 345
           FDRALVIEAFLACDRNEELAANYLLENSGDF+D
Sbjct: 372 FDRALVIEAFLACDRNEELAANYLLENSGDFED 395

[Close]
BLAST of Cucsa.177370.2 vs. TAIR10
Match: AT1G16190.1 (AT1G16190.1 Rad23 UV excision repair protein family)

HSP 1 Score: 345.1 bits (884), Expect = 4.9e-95
Identity = 191/333 (57.36%), Postives = 240/333 (72.07%), Query Frame = 1 

Query: 15  LLLLQSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQVTPS-PTPAPQAP 74
           ++L +SKT+ SAG SSTQP         + S+T AA   PS T +  V  S  TP  + P
Sbjct: 72  VMLSKSKTASSAGPSSTQPTST--TTSTISSTTLAA---PSTTQSIAVPASNSTPVQEQP 131

Query: 75  TQAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWD 134
           T                         Q+DTYGQAAS LV+G+++EQ VQQ+M+MGGG+WD
Sbjct: 132 T------------------------AQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWD 191

Query: 135 RETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPN 194
           +ETV RALRAAYNNPERAVDYLYSGIPE+  V +P     SG  +  + + P P SG PN
Sbjct: 192 KETVTRALRAAYNNPERAVDYLYSGIPET--VTIPATNL-SGVGSGRELTAPPP-SGGPN 251

Query: 195 TAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQN 254
           ++PL++FPQEA+   S   GG+LG+LEFLR N QFQ LR+MV++NPQILQPMLQELGKQN
Sbjct: 252 SSPLDLFPQEAV---SDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQN 311

Query: 255 PQLLRLIQDHHAEFLQLINEPVDNFEG--EMFEQAEPDMPHAINVTPAEQAAIERLEAMG 314
           PQLLRLIQ++ AEFLQL+NEP +  +G  ++F+Q + +MPH++NVTP EQ +IERLEAMG
Sbjct: 312 PQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMG 368

Query: 315 FDRALVIEAFLACDRNEELAANYLLENSGDFDD 345
           FDRA+VIEAFL+CDRNEELAANYLLE+S DF+D
Sbjct: 372 FDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368

[Close]
BLAST of Cucsa.177370.2 vs. TAIR10
Match: AT5G38470.1 (AT5G38470.1 Rad23 UV excision repair protein family)

HSP 1 Score: 327.8 bits (839), Expect = 8.1e-90
Identity = 180/336 (53.57%), Postives = 220/336 (65.48%), Query Frame = 1 

Query: 15  LLLLQSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQVTPSPTPAPQAPT 74
           ++++ SKT  S   +ST  A  P   QP   +TP                    AP A  
Sbjct: 69  IVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVS-----------------APTASV 128

Query: 75  QAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDR 134
             PT   ++A    T+ S      VQTD YGQAASNLVAG  LE TVQQ++DMGGG+WDR
Sbjct: 129 PVPTSGTATAAAPATAAS------VQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDR 188

Query: 135 ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQ------ATETDASVPAPV 194
           +TVVRALRAA+NNPERAV+YLYSGIP  AE+        +G+      A    A+ PA  
Sbjct: 189 DTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAA 248

Query: 195 SGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQE 254
           +G PN  PLN+FPQ   +A +G G GN   L+FLRN+ QFQALR MV  NPQILQPMLQE
Sbjct: 249 TGGPNANPLNLFPQGMPAADAGAGAGN---LDFLRNSQQFQALRAMVQANPQILQPMLQE 308

Query: 255 LGKQNPQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLE 314
           LGKQNPQL+RLIQ+H A+FL+LINEPV+  E  M EQ E  MP A+ VTP E+ AIERLE
Sbjct: 309 LGKQNPQLVRLIQEHQADFLRLINEPVEGEENVM-EQLEAAMPQAVTVTPEEREAIERLE 368

Query: 315 AMGFDRALVIEAFLACDRNEELAANYLLENSGDFDD 345
            MGFDRA+V+E F AC++NEELAANYLL++  +F+D
Sbjct: 369 GMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377

[Close]
BLAST of Cucsa.177370.2 vs. TAIR10
Match: AT3G02540.1 (AT3G02540.1 Rad23 UV excision repair protein family)

HSP 1 Score: 316.6 bits (810), Expect = 1.9e-86
Identity = 183/342 (53.51%), Postives = 225/342 (65.79%), Query Frame = 1 

Query: 22  TSVSAGQS---STQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQVTPSPTPAPQAPTQAPT 81
           +S SAG S   S  P+ + P   P   ++ +A V P+PT      P+PTPAP A T+  T
Sbjct: 85  SSASAGTSQAKSIPPSTSQPSISPQTPASVSAPVAPAPTRPPPPAPTPTPAPVAATETVT 144

Query: 82  QAPSSAPKNTTSTSERVTDNV----QTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDR 141
                    T S+S    D+     Q D YGQAASNL AG+NLE T+QQ++DMGGG WDR
Sbjct: 145 TPIPEPVPATISSSTPAPDSAPVGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDR 204

Query: 142 ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGR--FGSGQ----ATETDASVPAPV 201
           ETVV ALRAA+NNPERAV+YLY+GIPE AEV  PV R    +GQ      +T     AP 
Sbjct: 205 ETVVLALRAAFNNPERAVEYLYTGIPEQAEVP-PVARPPASAGQPANPPAQTQQPAAAPA 264

Query: 202 SGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQE 261
           SG PN  PL++FPQ   + G   G    G+L+FLRN+ QFQALR MV  NPQ+LQPMLQE
Sbjct: 265 SG-PNANPLDLFPQGLPNVGGNPGA---GTLDFLRNSQQFQALRAMVQANPQVLQPMLQE 324

Query: 262 LGKQNPQLLRLIQDHHAEFLQLINEPVD------NFEGEMFEQAEPDMPHAINVTPAEQA 321
           LGKQNP L+RLIQDH A+FL+LINEPV+      N  G+M   A    P AI VT  E+ 
Sbjct: 325 LGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQM--AAGMPQPQAIQVTHEERE 384

Query: 322 AIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFDD 345
           AIERLEAMGF+RALV+E F AC++NEELAANYLL++  +F++
Sbjct: 385 AIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419

[Close]
BLAST of Cucsa.177370.2 vs. TAIR10
Match: AT5G16090.1 (AT5G16090.1 INVOLVED IN: nucleotide-excision repair)

HSP 1 Score: 79.3 bits (194), Expect = 5.0e-15
Identity = 42/98 (42.86%), Postives = 67/98 (68.37%), Query Frame = 1 

Query: 241 ILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAE 300
           I +  L+E+ KQNP L ++I+ + A F+ ++N+     + E+  Q E D+   + VT  +
Sbjct: 74  ITKGCLEEMEKQNPPLFQMIRHNSAGFVPVLNKESFERDNEL-AQPEEDLLQ-LQVTAVD 133

Query: 301 QAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLEN 339
             AI RLEAMGF+R +V+E FLAC++NE+LAAN+LL++
Sbjct: 134 DEAINRLEAMGFERRVVLEVFLACNKNEQLAANFLLDH 169

[Close]
BLAST of Cucsa.177370.2 vs. NCBI nr
Match: gi|778682917|ref|XP_011651807.1| (PREDICTED: ubiquitin receptor RAD23b [Cucumis sativus])

HSP 1 Score: 622.5 bits (1604), Expect = 4.5e-175
Identity = 316/330 (95.76%), Postives = 319/330 (96.67%), Query Frame = 1 

Query: 15  LLLLQSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQVTPSPTPAPQAPT 74
           ++L +SKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQV          TPSPTPAPQAPT
Sbjct: 72  VMLSKSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQV----------TPSPTPAPQAPT 131

Query: 75  QAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDR 134
           QAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDR
Sbjct: 132 QAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDR 191

Query: 135 ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNT 194
           ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNT
Sbjct: 192 ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNT 251

Query: 195 APLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNP 254
           APLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNP
Sbjct: 252 APLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNP 311

Query: 255 QLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDR 314
           QLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDR
Sbjct: 312 QLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDR 371

Query: 315 ALVIEAFLACDRNEELAANYLLENSGDFDD 345
           ALVIEAFLACDRNEELAANYLLENSGDFDD
Sbjct: 372 ALVIEAFLACDRNEELAANYLLENSGDFDD 391

[Close]
BLAST of Cucsa.177370.2 vs. NCBI nr
Match: gi|659125987|ref|XP_008462954.1| (PREDICTED: ubiquitin receptor RAD23b isoform X2 [Cucumis melo])

HSP 1 Score: 599.4 bits (1544), Expect = 4.1e-168
Identity = 306/330 (92.73%), Postives = 310/330 (93.94%), Query Frame = 1 

Query: 15  LLLLQSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQVTPSPTPAPQAPT 74
           ++L +SKTS SAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPA Q             
Sbjct: 49  VMLSKSKTSASAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAPQ------------- 108

Query: 75  QAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDR 134
            APTQAPSSA KNTTSTS+RVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGG WDR
Sbjct: 109 -APTQAPSSALKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGTWDR 168

Query: 135 ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNT 194
           ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNT
Sbjct: 169 ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNT 228

Query: 195 APLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNP 254
           APLNMFPQEALSAG GGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNP
Sbjct: 229 APLNMFPQEALSAGGGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNP 288

Query: 255 QLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDR 314
           QLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDR
Sbjct: 289 QLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDR 348

Query: 315 ALVIEAFLACDRNEELAANYLLENSGDFDD 345
           ALVIEAFLACDRNEELAANYLLENSGDFDD
Sbjct: 349 ALVIEAFLACDRNEELAANYLLENSGDFDD 364

[Close]
BLAST of Cucsa.177370.2 vs. NCBI nr
Match: gi|659125985|ref|XP_008462953.1| (PREDICTED: ubiquitin receptor RAD23b isoform X1 [Cucumis melo])

HSP 1 Score: 599.4 bits (1544), Expect = 4.1e-168
Identity = 306/330 (92.73%), Postives = 310/330 (93.94%), Query Frame = 1 

Query: 15  LLLLQSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQVTPSPTPAPQAPT 74
           ++L +SKTS SAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPA Q             
Sbjct: 72  VMLSKSKTSASAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAPQ------------- 131

Query: 75  QAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDR 134
            APTQAPSSA KNTTSTS+RVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGG WDR
Sbjct: 132 -APTQAPSSALKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGTWDR 191

Query: 135 ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNT 194
           ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNT
Sbjct: 192 ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNT 251

Query: 195 APLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNP 254
           APLNMFPQEALSAG GGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNP
Sbjct: 252 APLNMFPQEALSAGGGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNP 311

Query: 255 QLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDR 314
           QLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDR
Sbjct: 312 QLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDR 371

Query: 315 ALVIEAFLACDRNEELAANYLLENSGDFDD 345
           ALVIEAFLACDRNEELAANYLLENSGDFDD
Sbjct: 372 ALVIEAFLACDRNEELAANYLLENSGDFDD 387

[Close]
BLAST of Cucsa.177370.2 vs. NCBI nr
Match: gi|590621587|ref|XP_007024818.1| (Rad23 UV excision repair protein family isoform 1 [Theobroma cacao])

HSP 1 Score: 457.2 bits (1175), Expect = 2.5e-125
Identity = 240/330 (72.73%), Postives = 265/330 (80.30%), Query Frame = 1 

Query: 15  LLLLQSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQVTPSPTPAPQAPT 74
           ++L +SK+  SAG SS QPA +                TPS TP A    +P PAP+AP 
Sbjct: 72  VMLSKSKSLGSAGTSSAQPASS----------------TPSVTPPAS---NPAPAPEAPA 131

Query: 75  QAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDR 134
           QAPT       K TTS S+  T N  TDTY QAASNLVAGNNLEQT+QQLMDMGGGNWD+
Sbjct: 132 QAPTS------KGTTSASDTATANPNTDTYSQAASNLVAGNNLEQTIQQLMDMGGGNWDK 191

Query: 135 ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNT 194
           ETV RALRAAYNNPERAVDYLYSGIPESAEVAVPVGRF + Q TET A+  APVSGAPN+
Sbjct: 192 ETVTRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFPTSQTTETGAAPAAPVSGAPNS 251

Query: 195 APLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNP 254
           +PLNMFPQE LS   G G G LGSL+FLRNN QFQALR+MV +NPQILQPMLQELGKQNP
Sbjct: 252 SPLNMFPQETLS---GAGAGGLGSLDFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNP 311

Query: 255 QLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDR 314
           QLLRLIQ+HHAEFLQLINEP++  EG++F+QAE DMPHAINVTPAEQ AIERLEAMGFDR
Sbjct: 312 QLLRLIQEHHAEFLQLINEPLEGSEGDIFDQAEQDMPHAINVTPAEQEAIERLEAMGFDR 371

Query: 315 ALVIEAFLACDRNEELAANYLLENSGDFDD 345
           ALVIEAFLACDRNEELAANYLLEN+GDF+D
Sbjct: 372 ALVIEAFLACDRNEELAANYLLENAGDFED 373

[Close]
BLAST of Cucsa.177370.2 vs. NCBI nr
Match: gi|643735283|gb|KDP41924.1| (hypothetical protein JCGZ_26942 [Jatropha curcas])

HSP 1 Score: 442.6 bits (1137), Expect = 6.4e-121
Identity = 234/331 (70.69%), Postives = 264/331 (79.76%), Query Frame = 1 

Query: 15  LLLLQSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQVTPSPTPAPQAPT 74
           ++L +SKTS S G SS+        AQP   + P    TP+ TPAA+V            
Sbjct: 49  VMLSKSKTSSSTGTSSSS-------AQPAAVTPPTTAATPNLTPAAEV------------ 108

Query: 75  QAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDR 134
               QAP S  K+TTS SE  T   QTDTYGQAASNLVAG+NLEQT+QQ+MD+GGGNWD+
Sbjct: 109 ----QAPIS--KSTTSASETATATAQTDTYGQAASNLVAGSNLEQTIQQIMDIGGGNWDK 168

Query: 135 ETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNT 194
           ETV RALRAAYNNPERAVDYLYSGIPE+AEVAVP  RF +GQAT+T AS  AP SGAPNT
Sbjct: 169 ETVTRALRAAYNNPERAVDYLYSGIPETAEVAVP--RFAAGQATDTGASPTAPASGAPNT 228

Query: 195 APLNMFPQEALSAGSGGGG-GNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQN 254
           +PLNMFPQE LSAG G GG G LGSL+FLRNN QFQALR+MV  NPQILQPMLQELGKQN
Sbjct: 229 SPLNMFPQETLSAGGGSGGTGGLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQN 288

Query: 255 PQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFD 314
           PQLLR+IQ+H+AEFLQLINEP++  EG++F+Q + DMPHAINVTPAEQ AIERLEAMGFD
Sbjct: 289 PQLLRMIQEHNAEFLQLINEPLEGSEGDIFDQVDQDMPHAINVTPAEQEAIERLEAMGFD 348

Query: 315 RALVIEAFLACDRNEELAANYLLENSGDFDD 345
           RALVIEAFLACDRNEELAANYLLEN+GDF+D
Sbjct: 349 RALVIEAFLACDRNEELAANYLLENAGDFED 352

The following BLAST results are available for this feature:
BLAST of Cucsa.177370.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RD23B_ARATH1.7e-10562.46Ubiquitin receptor RAD23b OS=Arabidopsis thaliana GN=RAD23B PE=1 SV=3[more]
RD23A_ARATH8.7e-9457.36Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana GN=RAD23A PE=1 SV=2[more]
RD23D_ARATH1.4e-8853.57Ubiquitin receptor RAD23d OS=Arabidopsis thaliana GN=RAD23D PE=1 SV=2[more]
RD23C_ARATH3.3e-8553.51Ubiquitin receptor RAD23c OS=Arabidopsis thaliana GN=RAD23C PE=1 SV=2[more]
RAD23_ORYSJ4.3e-7750.00Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 ... [more]
BLAST of Cucsa.177370.2 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LF05_CUCSA3.1e-17595.76Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710740 PE=4 SV=1[more]
A0A061GC26_THECC1.7e-12572.73Rad23 UV excision repair protein family isoform 1 OS=Theobroma cacao GN=TCM_0292... [more]
A0A067LCU6_JATCU4.5e-12170.69Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26942 PE=4 SV=1[more]
A0A059AJF1_EUCGR8.4e-12070.69Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03137 PE=4 SV=1[more]
A0A059AIX4_EUCGR1.1e-11970.39Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03137 PE=4 SV=1[more]
BLAST of Cucsa.177370.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G79650.49.5e-10762.46 Rad23 UV excision repair protein family[more]
AT1G16190.14.9e-9557.36 Rad23 UV excision repair protein family[more]
AT5G38470.18.1e-9053.57 Rad23 UV excision repair protein family[more]
AT3G02540.11.9e-8653.51 Rad23 UV excision repair protein family[more]
AT5G16090.15.0e-1542.86 INVOLVED IN: nucleotide-excision repair[more]
BLAST of Cucsa.177370.2 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778682917|ref|XP_011651807.1|4.5e-17595.76PREDICTED: ubiquitin receptor RAD23b [Cucumis sativus][more]
gi|659125987|ref|XP_008462954.1|4.1e-16892.73PREDICTED: ubiquitin receptor RAD23b isoform X2 [Cucumis melo][more]
gi|659125985|ref|XP_008462953.1|4.1e-16892.73PREDICTED: ubiquitin receptor RAD23b isoform X1 [Cucumis melo][more]
gi|590621587|ref|XP_007024818.1|2.5e-12572.73Rad23 UV excision repair protein family isoform 1 [Theobroma cacao][more]
gi|643735283|gb|KDP41924.1|6.4e-12170.69hypothetical protein JCGZ_26942 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR004806Rad23
IPR006636STI1_HS-bd
IPR009060UBA-like_sf
IPR015360XPC-bd
IPR015940UBA
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003684damaged DNA binding
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component GO:0005634 nucleus
molecular_function GO:0003684 damaged DNA binding
molecular_function GO:0005515 protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsa.177370Cucsa.177370gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsa.177370.2Cucsa.177370.2-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.177370.2.five_prime_UTR.1Cucsa.177370.2.five_prime_UTR.1five_prime_UTR
Cucsa.177370.2.five_prime_UTR.2Cucsa.177370.2.five_prime_UTR.2five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.177370.2.CDS.1Cucsa.177370.2.CDS.1CDS
Cucsa.177370.2.CDS.2Cucsa.177370.2.CDS.2CDS
Cucsa.177370.2.CDS.3Cucsa.177370.2.CDS.3CDS
Cucsa.177370.2.CDS.4Cucsa.177370.2.CDS.4CDS
Cucsa.177370.2.CDS.5Cucsa.177370.2.CDS.5CDS
Cucsa.177370.2.CDS.6Cucsa.177370.2.CDS.6CDS
Cucsa.177370.2.CDS.7Cucsa.177370.2.CDS.7CDS
Cucsa.177370.2.CDS.8Cucsa.177370.2.CDS.8CDS
Cucsa.177370.2.CDS.9Cucsa.177370.2.CDS.9CDS
Cucsa.177370.2.CDS.10Cucsa.177370.2.CDS.10CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.177370.2.three_prime_UTR.1Cucsa.177370.2.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004806UV excision repair protein Rad23PRINTSPR01839RAD23PROTEINcoord: 245..267
score: 3.3E-32coord: 311..325
score: 3.3E-32coord: 294..310
score: 3.3E-32coord: 326..341
score: 3.3
IPR004806UV excision repair protein Rad23TIGRFAMsTIGR00601TIGR00601coord: 49..343
score: 8.5
IPR006636Heat shock chaperonin-bindingSMARTSM00727CBMcoord: 217..260
score: 3.
IPR009060UBA-likeunknownSSF46934UBA-likecoord: 282..342
score: 1.92E-14coord: 114..165
score: 2.04
IPR015360XPC-binding domainGENE3DG3DSA:1.10.10.540coord: 216..281
score: 8.0
IPR015360XPC-binding domainPFAMPF09280XPC-bindingcoord: 219..274
score: 2.6
IPR015360XPC-binding domainunknownSSF101238XPC-binding domaincoord: 216..281
score: 1.1
IPR015940Ubiquitin-associated domainPFAMPF00627UBAcoord: 300..335
score: 1.4E-11coord: 117..155
score: 1.9
IPR015940Ubiquitin-associated domainSMARTSM00165uba_6coord: 300..337
score: 1.3E-7coord: 117..157
score: 1.
IPR015940Ubiquitin-associated domainPROFILEPS50030UBAcoord: 115..158
score: 13.222coord: 298..338
score: 14
NoneNo IPR availableGENE3DG3DSA:1.10.8.10coord: 110..161
score: 2.1E-21coord: 297..342
score: 2.3
NoneNo IPR availablePANTHERPTHR10621UV EXCISION REPAIR PROTEIN RAD23coord: 16..340
score: 3.2E
NoneNo IPR availablePANTHERPTHR10621:SF9F12F1.16 PROTEIN-RELATEDcoord: 16..340
score: 3.2E